CmoCh17G012060 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G012060
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPlant self-incompatibility protein S1 family
LocationCmo_Chr17 : 9652894 .. 9654138 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAGGATTGTGGCTGCATTGTTGCTAGTGACGGTGAGTTTGGTCGGGGCTCACCTCGAGGTTGAGTTTGAGAAGATCAATATAAAGCCGCCACTTTCCAGGTATTACATTCATTTCGTTAACGATCTAAGCATCCTTGGTATGATGGTGCACTGCCAGTCGAAGGACGATGATTTGGGAGTTCATCATTTGCTTAATCGAGGAGATAATTACCAATTTAACTTTAGGGTTAACTTTTGGAGAACAACCCTCTTTTGGTGTGATGTGGATAGGCCGGATGCACACGTCTCTTTTCAATGCTTTTGGCCTGAGAAGAGGAGCACATGGCTTCGTGATAGATGTCGAGATGGGAATGTAGGAACTTGTATCTGGAAGTTTAAAGATGATGGAGTTTACTTGAGAAACAATGCAGCTAATACTGATGAATTGGTTCATAAATGGACCTTTACAAGATAAAGAACTTTTATTATTAATTCATTTTGTTCTCATGAACAAATGAAAGGTACACCAACATTTAAAAGTTGAATAAAGAATAAGTTACGGGTTGAATGTTTTTTTTTTTTTTAAATATATTTGATAAATTAAGTTTTTTTTTCCTCTAAAATTGAACATTAATAACAAAAATTTTAAATAATGCTTACCATTAGAGGACCATTCTTACATGGGTTCACTTATAATAGCATTTTTTCAAACATTATAATATAGTATTTATAGTTTTATAACAAAGTTAATTAGTCGTAATAATCTTTTGATACTATTTCTTTTTCATTATATAAATTTATTTAAATATGTAAATATGATTTAAATAATTATATTTTGATATAATTTAATTAGTGAAATTAGTGAAATATAATTTAATTTGATTACTAGTTTTTACCATATATATTCTATTAATAGTTGTTTGTATTTTTTATCTCTTTCCAAATATTGATATTTTTGTTGTAACTTAGGTAAGTTAAGTTGTATTGAAAATTAATGAAATATTTTCTATATCTAATGCAATATTATCATTAATTAATTTTCATAATGCAAAATTAGATAGTTGATTAATTTTCTTAAAACCAAAACATTCCTTAATTTCTCGTTTTTGCTAGGGCTCAAGTACCTCCACCGGTACCTATAACGTATAATGTTCATGTTGTTAATGGGCTAAGCAACCTCGCGTTGGTGGTGCATTGTCAGTCCAAAGATGACGATTTAGGAATTCACAATTTGACTAATCGTAGAGATGAATACAAATGA

mRNA sequence

ATGATAAGGATTGTGGCTGCATTGTTGCTAGTGACGGTGAGTTTGGTCGGGGCTCACCTCGAGGTTGAGTTTGAGAAGATCAATATAAAGCCGCCACTTTCCAGGTATTACATTCATTTCGTTAACGATCTAAGCATCCTTGGTATGATGGTGCACTGCCAGTCGAAGGACGATGATTTGGGAGTTCATCATTTGCTTAATCGAGGAGATAATTACCAATTTAACTTTAGGGTTAACTTTTGGAGAACAACCCTCTTTTGGTGTGATGTGGATAGGCCGGATGCACACTTGTTTGTATTTTTTATCTCTTTCCAAATATTGATATTTTTGTTGGCTCAAGTACCTCCACCGGTACCTATAACGTATAATGTTCATGTTGTTAATGGGCTAAGCAACCTCGCGTTGGTGGTGCATTGTCAGTCCAAAGATGACGATTTAGGAATTCACAATTTGACTAATCGTAGAGATGAATACAAATGA

Coding sequence (CDS)

ATGATAAGGATTGTGGCTGCATTGTTGCTAGTGACGGTGAGTTTGGTCGGGGCTCACCTCGAGGTTGAGTTTGAGAAGATCAATATAAAGCCGCCACTTTCCAGGTATTACATTCATTTCGTTAACGATCTAAGCATCCTTGGTATGATGGTGCACTGCCAGTCGAAGGACGATGATTTGGGAGTTCATCATTTGCTTAATCGAGGAGATAATTACCAATTTAACTTTAGGGTTAACTTTTGGAGAACAACCCTCTTTTGGTGTGATGTGGATAGGCCGGATGCACACTTGTTTGTATTTTTTATCTCTTTCCAAATATTGATATTTTTGTTGGCTCAAGTACCTCCACCGGTACCTATAACGTATAATGTTCATGTTGTTAATGGGCTAAGCAACCTCGCGTTGGTGGTGCATTGTCAGTCCAAAGATGACGATTTAGGAATTCACAATTTGACTAATCGTAGAGATGAATACAAATGA
Homology
[Close]
BLAST of CmoCh17G012060 vs. TrEMBL
Match: B9RTI3_RICCO (RNA binding protein, putative OS=Ricinus communis GN=RCOM_0910760 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1 

Query: 35 RYYIHFVNDLSILGMMVHCQSKDDDLGVHHLLNRGDNYQFNFRVNFWRTTLFWCD 90
          RY++H +NDL+   + VHC+SKDDDLG H LL  G+ + F FRVNFW TTLFWC+
Sbjct: 31 RYHVHIINDLTRHTLNVHCKSKDDDLGPH-LLQLGEEFHFTFRVNFWGTTLFWCN 84

[Close]
BLAST of CmoCh17G012060 vs. TrEMBL
Match: B9GR91_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s25380g PE=4 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 39/107 (36.45%), Postives = 63/107 (58.88%), Query Frame = 1 

Query: 4   IVAALLLVTVSLVGAHLEVEFEKINIKPPLSRYYIHFVNDLSI-LGMMVHCQSKDDDLGV 63
           + A +L + ++    +  V  +K  I    + ++++ VN LS    + VHC+SKDDDLG 
Sbjct: 12  VTALVLALAINFTHQYCFVAAKKERILYEFTTWHVYVVNGLSNNRELSVHCKSKDDDLGF 71

Query: 64  HHLLNRGDNYQFNFRVNFWRTTLFWCDVDRPDAHLFVFFISFQILIF 110
           H  L+ GDN+ ++FR +F+  TLFWCDV++ DAH         +L+F
Sbjct: 72  H-CLSAGDNFTWSFREDFFLRTLFWCDVNKDDAHAVFKVFWHDVLLF 117

[Close]
BLAST of CmoCh17G012060 vs. TrEMBL
Match: A0A061EGE9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_018793 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.2e-08
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1 

Query: 41  VNDLSILG----MMVHCQSKDDDLGVHHLLNRGDNYQFNFRVNFWRTTLFWCDV---DRP 97
           V+ +S++G    + VHC S DDDLGVH L   G  +Q++FRVN +RTTLF+CDV   D P
Sbjct: 43  VHLISLVGAGDSITVHCASGDDDLGVHVLSGEGQEFQWSFRVNIFRTTLFYCDVSWRDIP 102

[Close]
BLAST of CmoCh17G012060 vs. TrEMBL
Match: B9S575_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1722060 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.8e-08
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 1 

Query: 36  YYIHFVNDLSILGMM-VHCQSKDDDLGVHHLLNRGDNYQFNFRVNFWRTTLFWCDVDRPD 95
           YY+H  N+LS   ++ VHC+SKDDDLG+H L  R  +Y + F +NF+ TTLFWC +  PD
Sbjct: 24  YYVHITNELSHNKVLHVHCKSKDDDLGIHQL-PRSQHYSWRFNLNFFATTLFWCYM-APD 83

Query: 96  AHLFVFFISF 105
           ++    F  F
Sbjct: 84  SNSHANFKVF 91

[Close]
BLAST of CmoCh17G012060 vs. TrEMBL
Match: A0A0A0KA40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G007430 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.9e-08
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 1 

Query: 32 PLSRYYIHFVNDLSILGMMVHCQSKDDDLGVHHLLNRGDNYQFNFRVNFWRTTLFWCDVD 91
          PL+ + +  +N      + VHC+SKDDDLGVH + N G++Y + F+ N+ +TT +WCD  
Sbjct: 34 PLTDWTVTIINYQINASLQVHCKSKDDDLGVHVIQNEGEHYSWGFKENWLQTTKYWCDFQ 93

Query: 92 RPDAH 97
              H
Sbjct: 94 SKLGH 98

[Close]
BLAST of CmoCh17G012060 vs. TAIR10
Match: AT5G04350.1 (AT5G04350.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 54.7 bits (130), Expect = 6.1e-08
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 1 

Query: 49  MMVHCQSKDDDLGVHHLLNRGDNYQFNFRVNFWRTTLFWCDVDR-PDAHLFVFFISFQ 106
           + VHC+SKDDDLG  H+L  G +Y+F F  N W+TT F C +D+ P+    + F++++
Sbjct: 41  LKVHCRSKDDDLG-EHILKIGQDYEFTFGDNIWQTTSFSCQMDQGPNFKHHLDFVAYE 97

[Close]
BLAST of CmoCh17G012060 vs. TAIR10
Match: AT5G06020.1 (AT5G06020.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 51.6 bits (122), Expect = 5.2e-07
Identity = 31/78 (39.74%), Postives = 45/78 (57.69%), Query Frame = 1 

Query: 25  EKINIKPPLSRYYIHFVNDLSILGMMVHCQSKDDDLGVHHLLNRGDNYQFNFRVNFWRTT 84
           E   I+ PL+R  +   ND  +LG  +HC+SKDDDLG  H+   G+ Y + F VNF  +T
Sbjct: 38  EPFPIRGPLTRITVKNNNDY-LLG--IHCKSKDDDLG-FHIHKEGELYGWKFHVNFQNST 97

Query: 85  LFWCDVDRPDAHLFVFFI 103
           L++C   +   +  VF I
Sbjct: 98  LYFCGFSQGQDNKGVFDI 111

[Close]
BLAST of CmoCh17G012060 vs. TAIR10
Match: AT5G04347.1 (AT5G04347.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 51.6 bits (122), Expect = 5.2e-07
Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 1 

Query: 42  NDLSILGMMVHCQSKDDDLGVHHLLNRGDNYQFNFRVNFWRTTLFWCDVDR-PDAHLFVF 101
           N+L+   + V C+SKDD+LG  H+L  G   + NF  N WR TLFWC++ + PD  L V 
Sbjct: 28  NELNNKVLGVRCRSKDDNLG-DHILRVGQMTKNNFDDNVWRRTLFWCNLWKGPDFKLHVA 87

Query: 102 FISFQ 106
           F +++
Sbjct: 88  FDAYR 91

[Close]
BLAST of CmoCh17G012060 vs. TAIR10
Match: AT3G26880.1 (AT3G26880.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 50.1 bits (118), Expect = 1.5e-06
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 1 

Query: 49  MMVHCQSKDDDLGVHHLLNRGDNYQFNFRVNFWRTTLFWCDVDR-PDAHLFVFFISFQIL 108
           + VHC+SK++D+GV + L  G+   F+F+ NFW TT FWC++ + PD   +    ++Q +
Sbjct: 40  LKVHCKSKNNDIGVKY-LKIGEVMSFSFKTNFWGTTEFWCNLYKGPDYKRYRGITAYQAI 98

[Close]
BLAST of CmoCh17G012060 vs. TAIR10
Match: AT4G16295.1 (AT4G16295.1 S-protein homologue 1)

HSP 1 Score: 50.1 bits (118), Expect = 1.5e-06
Identity = 26/82 (31.71%), Postives = 47/82 (57.32%), Query Frame = 1 

Query: 29  IKPPLSRYYIHFVNDLSI-LGMMVHCQSKDDDLGVHHLLNRGDNYQFNFRVNFWRTTLFW 88
           I P +S + +  VN L+    + +HC+SK+DDLG  +L  R + + +NF  N   +T FW
Sbjct: 34  IVPKISEWQVTVVNGLTTGETLFIHCKSKEDDLGEINLKFR-NRFSWNFGENMLHSTFFW 93

Query: 89  CDVDRPDAHLFVFFISFQILIF 110
           C +++ + H+ V      +++F
Sbjct: 94  CYMNKDNGHMNVNVFWDDVILF 114

[Close]
BLAST of CmoCh17G012060 vs. NCBI nr
Match: gi|659124355|ref|XP_008462115.1| (PREDICTED: uncharacterized protein LOC103500543 [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 5.0e-20
Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = 1 

Query: 29  IKPPL--SRYYIHFVNDLSILGMMVHCQSKDDDLGVHHLLNRGDNYQFNFRVNFWRTTLF 88
           +KPP   SRY++H VN LS   + VHCQSK+DDLG HHL+NRGD YQ+NF  N W TTLF
Sbjct: 12  LKPPPKPSRYFVHVVNGLSYQSLDVHCQSKNDDLGYHHLVNRGDEYQWNFEENLWGTTLF 71

Query: 89  WCDVDRPDAHLFVFFISFQILIFLLAQVPPPVPITYNVHVVNGLSNLALVVHCQSKDDDL 148
           WC +++PDA  +V F SF              P T NV + +   N    +   +KDD +
Sbjct: 72  WCRLEKPDA--YVAFESFW-------------PETKNVWLRDRCGNQGTCI-WTAKDDGI 127

Query: 149 GIHNLTNRRDEY 159
            + N+    DE+
Sbjct: 132 YLRNMPTNVDEF 127

[Close]
BLAST of CmoCh17G012060 vs. NCBI nr
Match: gi|659116532|ref|XP_008458117.1| (PREDICTED: uncharacterized protein LOC103497646 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = 1 

Query: 31  PPLSRYYIHFVNDLSILGMMVHCQSKDDDLGVHHLLNRGDNYQFNFRVNFWRTTLFWCDV 90
           P ++RYYIH +N LS   ++VHCQSKDDDLG HHL NRGD+YQ+NF+ NFW+TTLFWC +
Sbjct: 17  PSVTRYYIHVMNGLSNADLIVHCQSKDDDLGYHHLANRGDDYQWNFKENFWQTTLFWCKL 76

Query: 91  DRPDAHLFVFFISF 105
           ++ + H  V F SF
Sbjct: 77  EKQNVH--VSFESF 88

[Close]
BLAST of CmoCh17G012060 vs. NCBI nr
Match: gi|659124349|ref|XP_008462111.1| (PREDICTED: pumilio homolog 15-like [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 6.1e-18
Identity = 54/128 (42.19%), Postives = 73/128 (57.03%), Query Frame = 1 

Query: 31  PPLSRYYIHFVNDLSILGMMVHCQSKDDDLGVHHLLNRGDNYQFNFRVNFWRTTLFWCDV 90
           P  SRY++H VN LS   + VHCQSKDDDLG H L+N GD++Q+NFR NFW TTLFWC +
Sbjct: 16  PQASRYFVHVVNGLSYHNLDVHCQSKDDDLGYHCLVNHGDDFQWNFRENFWGTTLFWCRL 75

Query: 91  DRPDAHLFVFFISFQILIFLLAQVPPPVPITYNVHVVNGLSNLALVVHCQSKDDDLGIHN 150
           ++ DA  +V F SF              P + N+ +     N        +KDD + + N
Sbjct: 76  EKLDA--YVAFESFW-------------PESRNLWLRYRCGNQLGTCIWTAKDDGIYLRN 128

Query: 151 LTNRRDEY 159
           L+   DE+
Sbjct: 136 LSTNVDEF 128

[Close]
BLAST of CmoCh17G012060 vs. NCBI nr
Match: gi|659124363|ref|XP_008462119.1| (PREDICTED: uncharacterized protein LOC103500549 [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-17
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 1 

Query: 1  MIRIVAALLLVTVSLVGAHLEVEFEK-INIKPPLSRYYIHFVNDLSILGMMVHCQSKDDD 60
          M+R V  L L+  + V    E +  K + I+ P  RY+IH  NDL+   M VHCQSKDDD
Sbjct: 2  MMRNVVVLWLLMATWVA---EAQISKDVVIRVPPVRYFIHVANDLTNQDMFVHCQSKDDD 61

Query: 61 LGVHHLLNRGDNYQFNFRVNFWRTTLFWCDVDRPDAHL 98
          L + HL++RGD +++NF+ NFW+TTLFWC +++ DAH+
Sbjct: 62 LRIQHLVHRGDEFRWNFKENFWKTTLFWCRLEKSDAHV 96

[Close]
BLAST of CmoCh17G012060 vs. NCBI nr
Match: gi|449443935|ref|XP_004139731.1| (PREDICTED: uncharacterized protein LOC101207655 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-17
Identity = 38/66 (57.58%), Postives = 51/66 (77.27%), Query Frame = 1 

Query: 31 PPLSRYYIHFVNDLSILGMMVHCQSKDDDLGVHHLLNRGDNYQFNFRVNFWRTTLFWCDV 90
          P  SRY++H VN LS   + VHC+SKDDDLG HH++N GD++Q+NF  NFW TTLFWC +
Sbjct: 16 PTASRYFVHVVNGLSSHSLDVHCKSKDDDLGYHHMVNHGDDFQWNFEENFWGTTLFWCRL 75

Query: 91 DRPDAH 97
          + P+A+
Sbjct: 76 ENPEAY 81

The following BLAST results are available for this feature:
BLAST of CmoCh17G012060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh17G012060 vs. TrEMBL
Match NameE-valueIdentityDescription
B9RTI3_RICCO1.3e-1160.00RNA binding protein, putative OS=Ricinus communis GN=RCOM_0910760 PE=4 SV=1[more]
B9GR91_POPTR1.2e-0936.45Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s25380g P... [more]
A0A061EGE9_THECC5.2e-0852.38Uncharacterized protein OS=Theobroma cacao GN=TCM_018793 PE=4 SV=1[more]
B9S575_RICCO6.8e-0847.14Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1722060 PE=4 SV=1[more]
A0A0A0KA40_CUCSA8.9e-0840.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G007430 PE=4 SV=1[more]
BLAST of CmoCh17G012060 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G04350.16.1e-0843.10 Plant self-incompatibility protein S1 family[more]
AT5G06020.15.2e-0739.74 Plant self-incompatibility protein S1 family[more]
AT5G04347.15.2e-0743.08 Plant self-incompatibility protein S1 family[more]
AT3G26880.11.5e-0638.33 Plant self-incompatibility protein S1 family[more]
AT4G16295.11.5e-0631.71 S-protein homologue 1[more]
BLAST of CmoCh17G012060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659124355|ref|XP_008462115.1|5.0e-2043.94PREDICTED: uncharacterized protein LOC103500543 [Cucumis melo][more]
gi|659116532|ref|XP_008458117.1|1.5e-1960.81PREDICTED: uncharacterized protein LOC103497646 [Cucumis melo][more]
gi|659124349|ref|XP_008462111.1|6.1e-1842.19PREDICTED: pumilio homolog 15-like [Cucumis melo][more]
gi|659124363|ref|XP_008462119.1|1.4e-1747.96PREDICTED: uncharacterized protein LOC103500549 [Cucumis melo][more]
gi|449443935|ref|XP_004139731.1|1.8e-1757.58PREDICTED: uncharacterized protein LOC101207655 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010264Self-incomp_S1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G012060.1CmoCh17G012060.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 123..154
score: 1.2E-5coord: 38..94
score: 1.8
NoneNo IPR availablePANTHERPTHR31232FAMILY NOT NAMEDcoord: 1..106
score: 5.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh17G012060Cla97C09G172110Watermelon (97103) v2cmowmbB373
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G012060Silver-seed gourdcarcmoB0115
CmoCh17G012060Cucumber (Chinese Long) v3cmocucB0450
CmoCh17G012060Wax gourdcmowgoB0492
CmoCh17G012060Cucurbita moschata (Rifu)cmocmoB316
CmoCh17G012060Cucumber (Gy14) v1cgycmoB0134
CmoCh17G012060Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G012060Cucurbita maxima (Rimu)cmacmoB892
CmoCh17G012060Wild cucumber (PI 183967)cmocpiB377
CmoCh17G012060Cucumber (Chinese Long) v2cmocuB374
CmoCh17G012060Watermelon (Charleston Gray)cmowcgB302
CmoCh17G012060Watermelon (97103) v1cmowmB325
CmoCh17G012060Watermelon (97103) v1cmowmB339
CmoCh17G012060Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G012060Cucurbita pepo (Zucchini)cmocpeB348
CmoCh17G012060Bottle gourd (USVL1VR-Ls)cmolsiB334
CmoCh17G012060Cucumber (Gy14) v2cgybcmoB903