CmoCh17G012020 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G012020
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Delta 9 desaturase
Location	Cmo_Chr17 : 9631245 .. 9632721 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTGGTTTTTTGATTCGTATAACTTGACTAGAAAAGTGTGTCCGAACTATTTTAAGAACTTTGAAAAGGTGGAAAGAAACATGTTTATGTTCTTCATGAAGCATGGATATCCAGACAATGTCAGGGACTTGGAGAAACAATGGTTCTATAGGTTTATGCGTAAAACCTATTGGCTTCATCCATTGGCTCTGGCAGGGTTGCTGTATGCTGTTGGAGGAGTTCCTTATGTCATATGGGGAATGGTATAATTAATCTAAGCATGGTTTGATTATGATTATAAGTATTGATTAACCTCCAAATTGATTCGGGTTTTGTGTTGATTGAACTATTTATAGTGCGTGAGGTTCGTATTGAGCTTGCATATAACATCTATGGTCAATTCGGTTTGCCATATTTGGGGAACGCAACCATGGAATACGGGCGATTTATCGAGGAACAATTGGTAATTTTCTTCTCTTGTTTTTTACCATTTGTACGTGAAGAACTTTTTTATGAGATCCCGCATCGATTGGAGAGGAGAATGAAACATTCTTTATGTGGGTGTGGAAACCTCTCTGTAGCATACGCGTTTTAAAAATCTTGAGAAGTGTGAGATCTCACCTCTGTTGGGGAAGAAAACAAAGCATTTTTTTATAAGAGTGTGGAAATCTCTTCCTAGCAAATGCATTTTAAAAACGTTAAGAGGAAGCCCAAAAGGGAAAGCCCAAAGAGGACAATATGTGCTAGTGATGAGCTTGTATCGTTACAAATGATATCAAAGCCAGATACTGAGATGTGCCAGCAAAGAGGATGATCCTCGAAGGGGGTGGATTTGGTGGGGTCCCATATCGATTTGAGAAAGGAATGAGTGTCAGCGAAGGACACTCGACCCCAACGGAGGTGGATTGTGAGATCCCACATCGAGTAGAGAGGAGAACAAAACATTCTTTATACGCTGGATCTTGAAGGGGGTGGATTGTGAGATCCCCCATCGAGTTAGTAGGAGAACAGCAAGTCCAAGGAGGACAATATCTATTAGCGGTAGGTTTGAATCGTTACATCTGATCAAATTCGTACGTTTTTTCAGGATGGTAGCTTTGATAACGTTCGGAGAAGGATGGCACAACAACCACCACGCCTTCGAGTATTCAGCAAGGCATGGGCATGAATGGTGGGAGATTGATTATGGTTGGTATGTCATTAAGTTCCTTCAAGTCATTGGGTTAGCCACCTGCGTCAAATTACCCTCTCAAACCCAGAAGCTGGCTGCCTTAAACAAATCAAAACCTCACCTTACTTAACCCTATGATTCATTAAGAACACCATTATTATATTGTCTCATTTCAGAATGTGTTGCAAAATCAATATTATATCAATATATGAACTTATTGTACCCTACCTGTTTCGATTAGGATCAGACACTTATATTTGTGTTTTTATTGTGTTGGTTCTAAATAGATCGAAATTCTTAGTATGTTTGACAACAACCGCTAA

mRNA sequence

ATGACGTGGTTTTTTGATTCGTATAACTTGACTAGAAAAGTGTGTCCGAACTATTTTAAGAACTTTGAAAAGGTGGAAAGAAACATGTTTATGTTCTTCATGAAGCATGGATATCCAGACAATGTCAGGGACTTGGAGAAACAATGGTTCTATAGGTTTATGCGTAAAACCTATTGGCTTCATCCATTGGCTCTGGCAGGGTTGCTGTATGCTGTTGGAGGAGTTCCTTATGTCATATGGGGAATGTGCGTGAGGTTCGTATTGAGCTTGCATATAACATCTATGGTCAATTCGATCGAAATTCTTAGTATGTTTGACAACAACCGCTAA

Coding sequence (CDS)

ATGACGTGGTTTTTTGATTCGTATAACTTGACTAGAAAAGTGTGTCCGAACTATTTTAAGAACTTTGAAAAGGTGGAAAGAAACATGTTTATGTTCTTCATGAAGCATGGATATCCAGACAATGTCAGGGACTTGGAGAAACAATGGTTCTATAGGTTTATGCGTAAAACCTATTGGCTTCATCCATTGGCTCTGGCAGGGTTGCTGTATGCTGTTGGAGGAGTTCCTTATGTCATATGGGGAATGTGCGTGAGGTTCGTATTGAGCTTGCATATAACATCTATGGTCAATTCGATCGAAATTCTTAGTATGTTTGACAACAACCGCTAA

Homology

[Close]

BLAST of CmoCh17G012020 vs. Swiss-Prot
Match: ADS3_ARATH (Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic OS=Arabidopsis thaliana GN=ADS3 PE=1 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 6.7e-16
Identity = 46/98 (46.94%), Postives = 57/98 (58.16%), Query Frame = 1


Query: 1   MTWFFDSYNLTRKVCPNYFKNFEKVERNMFMFFMKHGYPDNVRDLEKQWFYRFMRKTYWL 60
           M W FD+  +T++                       G P+NV DLEKQ FYRF+R TY L
Sbjct: 210 MNWMFDTNTITQRC----------------------GEPNNVGDLEKQPFYRFLRTTYIL 269

Query: 61  HPLALAGLLYAVGGVPYVIWGMCVRFVLSLHITSMVNS 99
           HPLALA  LYA+GG P+++WGM VR V   HIT +VNS
Sbjct: 270 HPLALAVALYAMGGFPFIVWGMGVRIVWVYHITWLVNS 285

[Close]

BLAST of CmoCh17G012020 vs. Swiss-Prot
Match: ICO5D_LIMDO (Icosanoyl-CoA 5-desaturase (Fragment) OS=Limnanthes douglasii PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.3e-13
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1


Query: 37  GYPDNVRDLEKQWFYRFMRKTYWLHPLALAGLLYAVGGVPYVIWGMCVRFVLSLHITSMV 96
           G  +NV DL+KQ FYRF++KTY  H LAL  LLY VGG PY++WGM  R V   H T  +
Sbjct: 209 GRRNNVNDLKKQAFYRFLQKTYMYHQLALIALLYYVGGFPYIVWGMGFRLVFMFHSTFAI 268

Query: 97  NSI 100
           NS+
Sbjct: 269 NSV 271

[Close]

BLAST of CmoCh17G012020 vs. Swiss-Prot
Match: ADS2_ARATH (Delta-9 acyl-lipid desaturase 2 OS=Arabidopsis thaliana GN=ADS2 PE=2 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 4.2e-10
Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 1


Query: 35  KHGYPDNVRDLEKQWFYRFMRKTYWLHPLALAGLLYAVGGVPYVIWGMCVRFVLSLHITS 94
           K G   NV DL++QWFYRF++KT   H L L   L+ +GG+ +V WGM V   L +H+T 
Sbjct: 159 KCGRRANVEDLKRQWFYRFLQKTVLFHILGLGFFLFYLGGMSFVTWGMGVGAALEVHVTC 218

Query: 95  MVNSI 100
           ++NS+
Sbjct: 219 LINSL 223

[Close]

BLAST of CmoCh17G012020 vs. Swiss-Prot
Match: ADSL2_ARATH (Delta-9 desaturase-like 2 protein OS=Arabidopsis thaliana GN=At1g06100 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-08
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1


Query: 35  KHGYPDNVRDLEKQWFYRFMRKTYWLHPLALAGLLYAVGGVPYVIWGMCVRFVLSLHITS 94
           K G  +NV DL++QWFYRF++KT  LH LA   L+Y  GG+PY+ W +    V+  H T 
Sbjct: 151 KCGRRNNVMDLKQQWFYRFLKKTLVLHILAFWTLIYLWGGLPYLTWTVGFGGVIGYHGTW 210

Query: 95  MVNS 99
           +VNS
Sbjct: 211 LVNS 214

[Close]

BLAST of CmoCh17G012020 vs. Swiss-Prot
Match: ADS32_ARATH (Probable lipid desaturase ADS3.2, chloroplastic OS=Arabidopsis thaliana GN=ADS3.2 PE=2 SV=3)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-08
Identity = 27/63 (42.86%), Postives = 43/63 (68.25%), Query Frame = 1


Query: 37  GYPDNVRDLEKQWFYRFMRKTYWLHPLALAGLLYAVGGVPYVIWGMCVRFVLSLHITSMV 96
           G  +NV DL +Q FYRF+++T  LH +A + L Y  GG+P ++WG+ +   + LH+T +V
Sbjct: 216 GGEENVDDLVRQPFYRFLQRTVLLHMMAYSFLFYFCGGMPLLVWGIGITIAVRLHLTFLV 275

Query: 97  NSI 100
           NS+
Sbjct: 276 NSV 278

[Close]

BLAST of CmoCh17G012020 vs. TrEMBL
Match: A0A0A0KAB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G376370 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.9e-44
Identity = 81/99 (81.82%), Postives = 93/99 (93.94%), Query Frame = 1


Query: 1   MTWFFDSYNLTRKVCPNYFKNFEKVERNMFMFFMKHGYPDNVRDLEKQWFYRFMRKTYWL 60
           MTWFFDSYNLTRKVCPNYF N++KVERN+FMF+MKHGYPDNV DLEKQ FYRF+ KTYWL
Sbjct: 137 MTWFFDSYNLTRKVCPNYFNNYQKVERNIFMFYMKHGYPDNVTDLEKQKFYRFIHKTYWL 196

Query: 61  HPLALAGLLYAVGGVPYVIWGMCVRFVLSLHITSMVNSI 100
           HPLAL+ LLYA+GG+P++IWGMCVRFV SLH+TSMVNS+
Sbjct: 197 HPLALSLLLYAIGGLPFIIWGMCVRFVYSLHVTSMVNSV 235

[Close]

BLAST of CmoCh17G012020 vs. TrEMBL
Match: A0A0A0K8P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G377870 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.6e-43
Identity = 80/99 (80.81%), Postives = 93/99 (93.94%), Query Frame = 1


Query: 1   MTWFFDSYNLTRKVCPNYFKNFEKVERNMFMFFMKHGYPDNVRDLEKQWFYRFMRKTYWL 60
           MTWFFDSYNLTRKVCPNYF N++KVERN+FMF+MKHGYPDNV DLEKQ FYRF+ KTYWL
Sbjct: 70  MTWFFDSYNLTRKVCPNYFNNYQKVERNIFMFYMKHGYPDNVTDLEKQKFYRFIHKTYWL 129

Query: 61  HPLALAGLLYAVGGVPYVIWGMCVRFVLSLHITSMVNSI 100
           HPLAL+ LLYA+GG+P++IWG+CVRFVLSLH TSM+NS+
Sbjct: 130 HPLALSLLLYALGGLPFIIWGVCVRFVLSLHFTSMINSV 168

[Close]

BLAST of CmoCh17G012020 vs. TrEMBL
Match: A0A0A0KYH4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006130 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-33
Identity = 66/99 (66.67%), Postives = 85/99 (85.86%), Query Frame = 1


Query: 1   MTWFFDSYNLTRKVCPNYFKNFEKVERNMFMFFMKHGYPDNVRDLEKQWFYRFMRKTYWL 60
           +TW FDSYNLT+KVCPNYF +F+KV+R++F++F KHG PDNVRDLEKQ FYRF+ KTY+L
Sbjct: 133 ITWLFDSYNLTKKVCPNYFTDFQKVDRSIFIWFSKHGRPDNVRDLEKQTFYRFIHKTYFL 192

Query: 61  HPLALAGLLYAVGGVPYVIWGMCVRFVLSLHITSMVNSI 100
           H + LA LLY VGG+P++IWG CVR V+ +H+T MVNS+
Sbjct: 193 HHILLAILLYQVGGLPFLIWGTCVRIVVLMHVTFMVNSV 231

[Close]

BLAST of CmoCh17G012020 vs. TrEMBL
Match: A0A0A0KVH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006060 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.6e-30
Identity = 65/99 (65.66%), Postives = 75/99 (75.76%), Query Frame = 1


Query: 1   MTWFFDSYNLTRKVCPNYFKNFEKVERNMFMFFMKHGYPDNVRDLEKQWFYRFMRKTYWL 60
           M W FDSY LT KVCP Y  + +K+ERNMF+ F KHG PDNV DLEKQ FYRF+ KTY L
Sbjct: 153 MMWLFDSYTLTNKVCPKYSSDLKKIERNMFVIFTKHGKPDNVGDLEKQRFYRFIHKTYML 212

Query: 61  HPLALAGLLYAVGGVPYVIWGMCVRFVLSLHITSMVNSI 100
           H LALA +LY++GGVP+ IWGMCVR V   H T MVNS+
Sbjct: 213 HHLALAIILYSIGGVPFFIWGMCVRIVAVFHSTFMVNSV 251

[Close]

BLAST of CmoCh17G012020 vs. TrEMBL
Match: A0A0A0LVX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G227460 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-24
Identity = 56/98 (57.14%), Postives = 74/98 (75.51%), Query Frame = 1


Query: 2   TWFFDSYNLTRKVCPNYFKNFEKVERNMFMFFMKHGYPDNVRDLEKQWFYRFMRKTYWLH 61
           TW  DS  LT++VCP YF + +  ++ +F   +K+G P+NV DLEKQ FYRF+RKTY+LH
Sbjct: 129 TWLLDSNALTKRVCPQYFIDHKDTDKTIFTLVLKYGRPNNVGDLEKQSFYRFLRKTYFLH 188

Query: 62  PLALAGLLYAVGGVPYVIWGMCVRFVLSLHITSMVNSI 100
            LALA LLYAVGG P+++WGM VR +  LH+T M+NSI
Sbjct: 189 QLALAILLYAVGGTPFLVWGMFVRTIAFLHVTFMLNSI 226

[Close]

BLAST of CmoCh17G012020 vs. TAIR10
Match: AT3G15850.1 (AT3G15850.1 fatty acid desaturase 5)

HSP 1 Score: 84.7 bits (208), Expect = 3.8e-17
Identity = 46/98 (46.94%), Postives = 57/98 (58.16%), Query Frame = 1


Query: 1   MTWFFDSYNLTRKVCPNYFKNFEKVERNMFMFFMKHGYPDNVRDLEKQWFYRFMRKTYWL 60
           M W FD+  +T++                       G P+NV DLEKQ FYRF+R TY L
Sbjct: 210 MNWMFDTNTITQRC----------------------GEPNNVGDLEKQPFYRFLRTTYIL 269

Query: 61  HPLALAGLLYAVGGVPYVIWGMCVRFVLSLHITSMVNS 99
           HPLALA  LYA+GG P+++WGM VR V   HIT +VNS
Sbjct: 270 HPLALAVALYAMGGFPFIVWGMGVRIVWVYHITWLVNS 285

[Close]

BLAST of CmoCh17G012020 vs. TAIR10
Match: AT2G31360.1 (AT2G31360.1 16:0delta9 desaturase 2)

HSP 1 Score: 65.5 bits (158), Expect = 2.4e-11
Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 1


Query: 35  KHGYPDNVRDLEKQWFYRFMRKTYWLHPLALAGLLYAVGGVPYVIWGMCVRFVLSLHITS 94
           K G   NV DL++QWFYRF++KT   H L L   L+ +GG+ +V WGM V   L +H+T 
Sbjct: 159 KCGRRANVEDLKRQWFYRFLQKTVLFHILGLGFFLFYLGGMSFVTWGMGVGAALEVHVTC 218

Query: 95  MVNSI 100
           ++NS+
Sbjct: 219 LINSL 223

[Close]

BLAST of CmoCh17G012020 vs. TAIR10
Match: AT1G06100.1 (AT1G06100.1 Fatty acid desaturase family protein)

HSP 1 Score: 60.8 bits (146), Expect = 5.8e-10
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1


Query: 35  KHGYPDNVRDLEKQWFYRFMRKTYWLHPLALAGLLYAVGGVPYVIWGMCVRFVLSLHITS 94
           K G  +NV DL++QWFYRF++KT  LH LA   L+Y  GG+PY+ W +    V+  H T 
Sbjct: 151 KCGRRNNVMDLKQQWFYRFLKKTLVLHILAFWTLIYLWGGLPYLTWTVGFGGVIGYHGTW 210

Query: 95  MVNS 99
           +VNS
Sbjct: 211 LVNS 214

[Close]

BLAST of CmoCh17G012020 vs. TAIR10
Match: AT1G06350.1 (AT1G06350.1 Fatty acid desaturase family protein)

HSP 1 Score: 60.5 bits (145), Expect = 7.6e-10
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1


Query: 35  KHGYPDNVRDLEKQWFYRFMRKTYWLHPLALAGLLYAVGGVPYVIWGMCVRFVLSLHITS 94
           K G  DNV DL+KQWFY+F+R+T  +H L    +LY  GG+PY+  G  V   +  H+T 
Sbjct: 152 KCGGRDNVLDLKKQWFYKFLRRTIAVHILMFWTILYLYGGLPYLTCGGGVGIFIGYHVTW 211

Query: 95  MVNS 99
           +VNS
Sbjct: 212 LVNS 215

[Close]

BLAST of CmoCh17G012020 vs. TAIR10
Match: AT3G15870.1 (AT3G15870.1 Fatty acid desaturase family protein)

HSP 1 Score: 60.5 bits (145), Expect = 7.6e-10
Identity = 27/63 (42.86%), Postives = 43/63 (68.25%), Query Frame = 1


Query: 37  GYPDNVRDLEKQWFYRFMRKTYWLHPLALAGLLYAVGGVPYVIWGMCVRFVLSLHITSMV 96
           G  +NV DL +Q FYRF+++T  LH +A + L Y  GG+P ++WG+ +   + LH+T +V
Sbjct: 216 GGEENVDDLVRQPFYRFLQRTVLLHMMAYSFLFYFCGGMPLLVWGIGITIAVRLHLTFLV 275

Query: 97  NSI 100
           NS+
Sbjct: 276 NSV 278

[Close]

BLAST of CmoCh17G012020 vs. NCBI nr
Match: gi|778727442|ref|XP_011659261.1| (PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 9.9e-44
Identity = 81/99 (81.82%), Postives = 93/99 (93.94%), Query Frame = 1


Query: 1   MTWFFDSYNLTRKVCPNYFKNFEKVERNMFMFFMKHGYPDNVRDLEKQWFYRFMRKTYWL 60
           MTWFFDSYNLTRKVCPNYF N++KVERN+FMF+MKHGYPDNV DLEKQ FYRF+ KTYWL
Sbjct: 137 MTWFFDSYNLTRKVCPNYFNNYQKVERNIFMFYMKHGYPDNVTDLEKQKFYRFIHKTYWL 196

Query: 61  HPLALAGLLYAVGGVPYVIWGMCVRFVLSLHITSMVNSI 100
           HPLAL+ LLYA+GG+P++IWGMCVRFV SLH+TSMVNS+
Sbjct: 197 HPLALSLLLYAIGGLPFIIWGMCVRFVYSLHVTSMVNSV 235

[Close]

BLAST of CmoCh17G012020 vs. NCBI nr
Match: gi|778730379|ref|XP_011659770.1| (PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 3.8e-43
Identity = 80/99 (80.81%), Postives = 93/99 (93.94%), Query Frame = 1


Query: 1   MTWFFDSYNLTRKVCPNYFKNFEKVERNMFMFFMKHGYPDNVRDLEKQWFYRFMRKTYWL 60
           MTWFFDSYNLTRKVCPNYF N++KVERN+FMF+MKHGYPDNV DLEKQ FYRF+ KTYWL
Sbjct: 138 MTWFFDSYNLTRKVCPNYFNNYQKVERNIFMFYMKHGYPDNVTDLEKQKFYRFIHKTYWL 197

Query: 61  HPLALAGLLYAVGGVPYVIWGMCVRFVLSLHITSMVNSI 100
           HPLAL+ LLYA+GG+P++IWG+CVRFVLSLH TSM+NS+
Sbjct: 198 HPLALSLLLYALGGLPFIIWGVCVRFVLSLHFTSMINSV 236

[Close]

BLAST of CmoCh17G012020 vs. NCBI nr
Match: gi|700189514|gb|KGN44747.1| (hypothetical protein Csa_7G377870 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 3.8e-43
Identity = 80/99 (80.81%), Postives = 93/99 (93.94%), Query Frame = 1


Query: 1   MTWFFDSYNLTRKVCPNYFKNFEKVERNMFMFFMKHGYPDNVRDLEKQWFYRFMRKTYWL 60
           MTWFFDSYNLTRKVCPNYF N++KVERN+FMF+MKHGYPDNV DLEKQ FYRF+ KTYWL
Sbjct: 70  MTWFFDSYNLTRKVCPNYFNNYQKVERNIFMFYMKHGYPDNVTDLEKQKFYRFIHKTYWL 129

Query: 61  HPLALAGLLYAVGGVPYVIWGMCVRFVLSLHITSMVNSI 100
           HPLAL+ LLYA+GG+P++IWG+CVRFVLSLH TSM+NS+
Sbjct: 130 HPLALSLLLYALGGLPFIIWGVCVRFVLSLHFTSMINSV 168

[Close]

BLAST of CmoCh17G012020 vs. NCBI nr
Match: gi|659100773|ref|XP_008451259.1| (PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 4.9e-43
Identity = 78/99 (78.79%), Postives = 91/99 (91.92%), Query Frame = 1


Query: 1   MTWFFDSYNLTRKVCPNYFKNFEKVERNMFMFFMKHGYPDNVRDLEKQWFYRFMRKTYWL 60
           MTW FDSYNLTRKVCPNYF N++K ERN+FM +MKHGYPDNV DLEKQWFYRF+ KTYWL
Sbjct: 139 MTWLFDSYNLTRKVCPNYFNNYQKAERNIFMLYMKHGYPDNVPDLEKQWFYRFIHKTYWL 198

Query: 61  HPLALAGLLYAVGGVPYVIWGMCVRFVLSLHITSMVNSI 100
           HPLAL+ LLYA+GG+P++IWGMCVRFV S+H+TSMVNS+
Sbjct: 199 HPLALSLLLYAIGGLPFIIWGMCVRFVYSVHVTSMVNSV 237

[Close]

BLAST of CmoCh17G012020 vs. NCBI nr
Match: gi|659100771|ref|XP_008451258.1| (PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 8.4e-43
Identity = 80/99 (80.81%), Postives = 91/99 (91.92%), Query Frame = 1


Query: 1   MTWFFDSYNLTRKVCPNYFKNFEKVERNMFMFFMKHGYPDNVRDLEKQWFYRFMRKTYWL 60
           MTWFFDSYNLTRKVCPNYF NF+KVERN FMF+MKHGY DNV DLEKQ FYRF+ KTYWL
Sbjct: 137 MTWFFDSYNLTRKVCPNYFNNFQKVERNAFMFYMKHGYADNVTDLEKQRFYRFIHKTYWL 196

Query: 61  HPLALAGLLYAVGGVPYVIWGMCVRFVLSLHITSMVNSI 100
           HPLAL+ LLYA+GG+P++IWGMCVRFV+SLH TSM+NS+
Sbjct: 197 HPLALSLLLYAIGGLPFIIWGMCVRFVISLHFTSMINSV 235

The following BLAST results are available for this feature:

BLAST of CmoCh17G012020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ADS3_ARATH	6.7e-16	46.94	Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic OS=Arab...	[more]
ICO5D_LIMDO	5.3e-13	55.56	Icosanoyl-CoA 5-desaturase (Fragment) OS=Limnanthes douglasii PE=1 SV=1	[more]
ADS2_ARATH	4.2e-10	46.15	Delta-9 acyl-lipid desaturase 2 OS=Arabidopsis thaliana GN=ADS2 PE=2 SV=2	[more]
ADSL2_ARATH	1.0e-08	48.44	Delta-9 desaturase-like 2 protein OS=Arabidopsis thaliana GN=At1g06100 PE=2 SV=1	[more]
ADS32_ARATH	1.4e-08	42.86	Probable lipid desaturase ADS3.2, chloroplastic OS=Arabidopsis thaliana GN=ADS3....	[more]

BLAST of CmoCh17G012020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAB1_CUCSA	6.9e-44	81.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G376370 PE=3 SV=1	[more]
A0A0A0K8P8_CUCSA	2.6e-43	80.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G377870 PE=3 SV=1	[more]
A0A0A0KYH4_CUCSA	2.5e-33	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006130 PE=3 SV=1	[more]
A0A0A0KVH2_CUCSA	2.6e-30	65.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006060 PE=3 SV=1	[more]
A0A0A0LVX7_CUCSA	1.6e-24	57.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G227460 PE=3 SV=1	[more]

BLAST of CmoCh17G012020 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15850.1	3.8e-17	46.94	fatty acid desaturase 5	[more]
AT2G31360.1	2.4e-11	46.15	16:0delta9 desaturase 2	[more]
AT1G06100.1	5.8e-10	48.44	Fatty acid desaturase family protein	[more]
AT1G06350.1	7.6e-10	46.88	Fatty acid desaturase family protein	[more]
AT3G15870.1	7.6e-10	42.86	Fatty acid desaturase family protein	[more]

BLAST of CmoCh17G012020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778727442\|ref\|XP_011659261.1\|	9.9e-44	81.82	PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplas...	[more]
gi\|778730379\|ref\|XP_011659770.1\|	3.8e-43	80.81	PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplas...	[more]
gi\|700189514\|gb\|KGN44747.1\|	3.8e-43	80.81	hypothetical protein Csa_7G377870 [Cucumis sativus]	[more]
gi\|659100773\|ref\|XP_008451259.1\|	4.9e-43	78.79	PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplas...	[more]
gi\|659100771\|ref\|XP_008451258.1\|	8.4e-43	80.81	PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplas...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G012020.1	CmoCh17G012020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11351	ACYL-COA DESATURASE	coord: 35..99 score: 3.3
None	No IPR available	PANTHER	PTHR11351:SF2	DELTA-9 ACYL-LIPID DESATURASE 1-RELATED	coord: 35..99 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G012020	Lsi02G022220	Bottle gourd (USVL1VR-Ls)	cmolsiB337
CmoCh17G012020	MELO3C015744.2	Melon (DHL92) v3.6.1	cmomedB366
CmoCh17G012020	CsaV3_7G027430	Cucumber (Chinese Long) v3	cmocucB0455
CmoCh17G012020	Cla97C09G170300	Watermelon (97103) v2	cmowmbB369
CmoCh17G012020	CsGy7G014190	Cucumber (Gy14) v2	cgybcmoB910

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh17G012020	CmoCh08G002940	Cucurbita moschata (Rifu)	cmocmoB319

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G012020	Silver-seed gourd	carcmoB0152
CmoCh17G012020	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G012020	Watermelon (97103) v1	cmowmB339
CmoCh17G012020	Cucurbita pepo (Zucchini)	cmocpeB335