CmoCh17G009900 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G009900
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPhotosystem II CP47 reaction center protein
LocationCmo_Chr17 : 8558654 .. 8559290 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTGCCTTGGTATCGTGTTCATACGGTTGTATTGAATGATCCCGGTCGTTTGCTTTCTGTTCATATAATGCATACAGCTCTAGTTTTTGTTTGGGCCGATTCAATGGTCCTATACGAATTAGCAATTTTTTATCCCTCTATTCCTGTTCTTGATCCAATGTGGAGACAAGGAGACATATCCAATGTGGAGACAAGGAGACAAGGTATGTTCGTTATATCTTGTTCATACGTGTTTTCTGGATTGTGCTTCTTAGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGAAATATTTTGTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCCGAAGATTTTTGGAATTCATTTATTTCTCTCCGGGTTGGATTACTTTGGTTTTGGATCATTTCACGTAACCAGATTGTATGTTTATTTACTTTTAAATGATTGGTTTAAAGATGATTCGGATCTAAGTTCATTCTTTGAGTTGATTGAAATGAGCCTGAGTTTTTTTTTTTTGGTGTTTGTGTAACAAGGATAAGGGTTTGAAGAAGTTCTTATGGCAACATAGTGTTCACTACCGGTTTGGGTTTAACAATCAAACCGACCCATGTAACCATGTGCGTGACCATACAAGTGCACGGTGA

mRNA sequence

ATGGGTTTGCCTTGGTATCGTGTTCATACGGTTGTATTGAATGATCCCGGTCGTTTGCTTTCTGTTCATATAATGCATACAGCTCTAGTTTTTGTTTGGGCCGATTCAATGGTCCTATACGAATTAGCAATTTTTTATCCCTCTATTCCTGTTCTTGATCCAATGTGGAGACAAGGAGACATATCCAATGTGGAGACAAGGAGACAAGGTATGTTCGTTATATCTTGTTCATACGTGTTTTCTGGATTGTGCTTCTTAGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGAAATATTTTGTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCCGAAGATTTTTGGAATTCATTTATTTCTCTCCGGGTTGGATTACTTTGGTTTTGGATCATTTCACGATAAGGGTTTGAAGAAGTTCTTATGGCAACATAGTGTTCACTACCGGTTTGGGTTTAACAATCAAACCGACCCATGTAACCATGTGCGTGACCATACAAGTGCACGGTGA

Coding sequence (CDS)

ATGGGTTTGCCTTGGTATCGTGTTCATACGGTTGTATTGAATGATCCCGGTCGTTTGCTTTCTGTTCATATAATGCATACAGCTCTAGTTTTTGTTTGGGCCGATTCAATGGTCCTATACGAATTAGCAATTTTTTATCCCTCTATTCCTGTTCTTGATCCAATGTGGAGACAAGGAGACATATCCAATGTGGAGACAAGGAGACAAGGTATGTTCGTTATATCTTGTTCATACGTGTTTTCTGGATTGTGCTTCTTAGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGAAATATTTTGTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCCGAAGATTTTTGGAATTCATTTATTTCTCTCCGGGTTGGATTACTTTGGTTTTGGATCATTTCACGATAAGGGTTTGAAGAAGTTCTTATGGCAACATAGTGTTCACTACCGGTTTGGGTTTAACAATCAAACCGACCCATGTAACCATGTGCGTGACCATACAAGTGCACGGTGA
Homology
[Close]
BLAST of CmoCh17G009900 vs. Swiss-Prot
Match: PSBB_DIOEL (Photosystem II CP47 reaction center protein OS=Dioscorea elephantipes GN=psbB PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.6e-56
Identity = 111/161 (68.94%), Postives = 115/161 (71.43%), Query Frame = 1 

Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG- 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG 
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  ------------------DISNVETRRQGMF----VISCSYVFSGLCFLAAIWHWVYWDL 120
                              IS       G++    V     VFSGLCFLAAIWHWVYWDL
Sbjct: 61  FVIPFMTRLGITNSWGGWSISGGSITNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDL 120

Query: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL 139
           EIFCDERTGKPSLDLPKIFGIHLFLSGL  FGFG+FH  GL
Sbjct: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLACFGFGAFHVTGL 161

[Close]
BLAST of CmoCh17G009900 vs. Swiss-Prot
Match: PSBB_IPOPU (Photosystem II CP47 reaction center protein OS=Ipomoea purpurea GN=psbB PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 7.9e-56
Identity = 115/185 (62.16%), Postives = 123/185 (66.49%), Query Frame = 1 

Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG- 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG 
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  ------------------DISNVETRRQGMF----VISCSYVFSGLCFLAAIWHWVYWDL 120
                              I+       G++    V     VFSGLCFLAAIWHWVYWDL
Sbjct: 61  FVIPFMTRLGITNSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDL 120

Query: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQ 162
           EIFCDERTGKPSLDLPKIFGIHLFLSGL  FGFG+FH  GL    +W   V   +G   +
Sbjct: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLACFGFGAFHVTGLYGPGIW---VSDPYGLTGK 180

[Close]
BLAST of CmoCh17G009900 vs. Swiss-Prot
Match: PSBB_LOBMA (Photosystem II CP47 reaction center protein OS=Lobularia maritima GN=psbB PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.0e-55
Identity = 114/185 (61.62%), Postives = 125/185 (67.57%), Query Frame = 1 

Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG- 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG 
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  ------------------DISNVETRRQGMF----VISCSYVFSGLCFLAAIWHWVYWDL 120
                             +I+       G++    V +   VFSGLCFLAAIWHWVYWDL
Sbjct: 61  FVIPFMTRLGITNSWGGWNITGGTITNPGLWSYEGVAAAHIVFSGLCFLAAIWHWVYWDL 120

Query: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQ 162
           EIFCDERTGKPSLDLPKIFGIHLFLSG+  FGFG+FH  GL    +W   V   +G   +
Sbjct: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGVACFGFGAFHVTGLYGPGIW---VSDPYGLTGK 180

[Close]
BLAST of CmoCh17G009900 vs. Swiss-Prot
Match: PSBB_CAPBU (Photosystem II CP47 reaction center protein OS=Capsella bursa-pastoris GN=psbB PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.0e-55
Identity = 114/185 (61.62%), Postives = 125/185 (67.57%), Query Frame = 1 

Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG- 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG 
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  ------------------DISNVETRRQGMF----VISCSYVFSGLCFLAAIWHWVYWDL 120
                             +I+       G++    V +   VFSGLCFLAAIWHWVYWDL
Sbjct: 61  FVIPFMTRLGITNSWGGWNITGGTITNPGLWSYEGVAAAHIVFSGLCFLAAIWHWVYWDL 120

Query: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQ 162
           EIFCDERTGKPSLDLPKIFGIHLFLSG+  FGFG+FH  GL    +W   V   +G   +
Sbjct: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGVACFGFGAFHVTGLYGPGIW---VSDPYGLTGK 180

[Close]
BLAST of CmoCh17G009900 vs. Swiss-Prot
Match: PSBB_OLIPU (Photosystem II CP47 reaction center protein OS=Olimarabidopsis pumila GN=psbB PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-55
Identity = 114/185 (61.62%), Postives = 124/185 (67.03%), Query Frame = 1 

Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG- 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG 
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  ------------------DISNVETRRQGMF----VISCSYVFSGLCFLAAIWHWVYWDL 120
                             +I+       G++    V     VFSGLCFLAAIWHWVYWDL
Sbjct: 61  FVIPFMTRLGITNSWGGWNITGGTITNPGLWSYEGVAGAHIVFSGLCFLAAIWHWVYWDL 120

Query: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQ 162
           EIFCDERTGKPSLDLPKIFGIHLFLSG+  FGFG+FH  GL    +W   V   +G   +
Sbjct: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGVACFGFGAFHVTGLYGPGIW---VSDPYGLTGK 180

[Close]
BLAST of CmoCh17G009900 vs. TrEMBL
Match: K3Z2V7_SETIT (Photosystem II CP47 reaction center protein OS=Setaria italica GN=SETIT_020875mg PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.4e-54
Identity = 107/145 (73.79%), Postives = 112/145 (77.24%), Query Frame = 1 

Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQGD 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG 
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  IS-------NVETRRQGMFVISCSYVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLP 120
                     +     G  V     VFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLP
Sbjct: 61  FVIPFMTRLGITNSWGGWSVAGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLP 120

Query: 121 KIFGIHLFLSGLDYFGFGSFHDKGL 139
           KIFGIHLFL+G+  FGFG+FH  GL
Sbjct: 121 KIFGIHLFLAGVACFGFGAFHVTGL 145

[Close]
BLAST of CmoCh17G009900 vs. TrEMBL
Match: H2FAR2_PHOTN (Photosystem II CP47 reaction center protein OS=Phormium tenax GN=psbB PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.0e-54
Identity = 111/161 (68.94%), Postives = 116/161 (72.05%), Query Frame = 1 

Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG- 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG 
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  ------------------DISNVETRRQGMF----VISCSYVFSGLCFLAAIWHWVYWDL 120
                             +IS       G++    V     VFSGLCFLAAIWHWVYWDL
Sbjct: 61  FVIPFMTRLGITNSWGGWNISGGTVTNSGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDL 120

Query: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL 139
           EIFCDERTGKPSLDLPKIFGIHLFLSGL  FGFG+FH  GL
Sbjct: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLACFGFGAFHVTGL 161

[Close]
BLAST of CmoCh17G009900 vs. TrEMBL
Match: H2FAS3_9ASPA (Photosystem II CP47 reaction center protein OS=Eriospermum cervicorne GN=psbB PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.0e-54
Identity = 111/161 (68.94%), Postives = 115/161 (71.43%), Query Frame = 1 

Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG- 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG 
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  ------------------DISNVETRRQGMF----VISCSYVFSGLCFLAAIWHWVYWDL 120
                              IS       G++    V     VFSGLCFLAAIWHWVYWDL
Sbjct: 61  FVIPFMTRLGITNSWGGWSISGGTVTNSGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDL 120

Query: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL 139
           EIFCDERTGKPSLDLPKIFGIHLFLSGL  FGFG+FH  GL
Sbjct: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLACFGFGAFHVTGL 161

[Close]
BLAST of CmoCh17G009900 vs. TrEMBL
Match: A0A0U3DFV0_9ROSI (Photosystem II CP47 reaction center protein OS=Aquilaria sinensis GN=psbB PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.2e-54
Identity = 113/185 (61.08%), Postives = 125/185 (67.57%), Query Frame = 1 

Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG- 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG 
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  ------------------DISNVETRRQGMF----VISCSYVFSGLCFLAAIWHWVYWDL 120
                              I+ +   + G++    V     VFSGLCFLAAIWHWVYWDL
Sbjct: 61  FVIPFMTRLGITNSWGGWSITGITISKTGLWSYEGVAGAHIVFSGLCFLAAIWHWVYWDL 120

Query: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQ 162
           EIFCDERTGKPSLDLPKIFGIHLFL+G+  FGFG+FH  GL    +W   V   +G   +
Sbjct: 121 EIFCDERTGKPSLDLPKIFGIHLFLAGVACFGFGAFHVTGLYGPGIW---VSDPYGLTGK 180

[Close]
BLAST of CmoCh17G009900 vs. TrEMBL
Match: A0A0D2X6X6_9APIA (Photosystem II CP47 reaction center protein OS=Tiedemannia filiformis subsp. greenmannii GN=psbB PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.2e-54
Identity = 115/185 (62.16%), Postives = 124/185 (67.03%), Query Frame = 1 

Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG- 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG 
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  ------------------DISNVETRRQGMF----VISCSYVFSGLCFLAAIWHWVYWDL 120
                              I+   T   G++    V     VFSGLCFLAAIWHWVYWDL
Sbjct: 61  FVIPFMTRLGITSSWGGWSITGGATSNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDL 120

Query: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQ 162
           EIFCDERTGKPSLDLPKIFGIHLFL+GL  FGFG+FH  GL    +W   V   +G   +
Sbjct: 121 EIFCDERTGKPSLDLPKIFGIHLFLAGLACFGFGAFHVTGLYGPGIW---VSDPYGLTGK 180

[Close]
BLAST of CmoCh17G009900 vs. TAIR10
Match: ATCG00680.1 (ATCG00680.1 photosystem II reaction center protein B)

HSP 1 Score: 216.1 bits (549), Expect = 1.7e-56
Identity = 113/185 (61.08%), Postives = 124/185 (67.03%), Query Frame = 1 

Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG- 60
           MGLPWYRVHTVVLNDPGRLL+VHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG 
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  ------------------DISNVETRRQGMF----VISCSYVFSGLCFLAAIWHWVYWDL 120
                             +I+       G++    V     VFSGLCFLAAIWHWVYWDL
Sbjct: 61  FVIPFMTRLGITNSWGGWNITGGTITNPGLWSYEGVAGAHIVFSGLCFLAAIWHWVYWDL 120

Query: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQ 162
           EIFCDERTGKPSLDLPKIFGIHLFLSG+  FGFG+FH  GL    +W   V   +G   +
Sbjct: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGVACFGFGAFHVTGLYGPGIW---VSDPYGLTGK 180

[Close]
BLAST of CmoCh17G009900 vs. NCBI nr
Match: gi|944221242|gb|KQK85695.1| (hypothetical protein SETIT_020875mg [Setaria italica])

HSP 1 Score: 220.7 bits (561), Expect = 1.9e-54
Identity = 107/145 (73.79%), Postives = 112/145 (77.24%), Query Frame = 1 

Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQGD 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG 
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  IS-------NVETRRQGMFVISCSYVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLP 120
                     +     G  V     VFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLP
Sbjct: 61  FVIPFMTRLGITNSWGGWSVAGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLP 120

Query: 121 KIFGIHLFLSGLDYFGFGSFHDKGL 139
           KIFGIHLFL+G+  FGFG+FH  GL
Sbjct: 121 KIFGIHLFLAGVACFGFGAFHVTGL 145

[Close]
BLAST of CmoCh17G009900 vs. NCBI nr
Match: gi|372484207|gb|AEX95745.1| (photosystem II CP47 chlorophyll apoprotein (chloroplast) [Phormium tenax])

HSP 1 Score: 219.5 bits (558), Expect = 4.3e-54
Identity = 111/161 (68.94%), Postives = 116/161 (72.05%), Query Frame = 1 

Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG- 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG 
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  ------------------DISNVETRRQGMF----VISCSYVFSGLCFLAAIWHWVYWDL 120
                             +IS       G++    V     VFSGLCFLAAIWHWVYWDL
Sbjct: 61  FVIPFMTRLGITNSWGGWNISGGTVTNSGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDL 120

Query: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL 139
           EIFCDERTGKPSLDLPKIFGIHLFLSGL  FGFG+FH  GL
Sbjct: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLACFGFGAFHVTGL 161

[Close]
BLAST of CmoCh17G009900 vs. NCBI nr
Match: gi|372484229|gb|AEX95756.1| (photosystem II CP47 chlorophyll apoprotein (chloroplast) [Eriospermum cervicorne])

HSP 1 Score: 219.2 bits (557), Expect = 5.7e-54
Identity = 111/161 (68.94%), Postives = 115/161 (71.43%), Query Frame = 1 

Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG- 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG 
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  ------------------DISNVETRRQGMF----VISCSYVFSGLCFLAAIWHWVYWDL 120
                              IS       G++    V     VFSGLCFLAAIWHWVYWDL
Sbjct: 61  FVIPFMTRLGITNSWGGWSISGGTVTNSGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDL 120

Query: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL 139
           EIFCDERTGKPSLDLPKIFGIHLFLSGL  FGFG+FH  GL
Sbjct: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLACFGFGAFHVTGL 161

[Close]
BLAST of CmoCh17G009900 vs. NCBI nr
Match: gi|651249294|ref|YP_009033911.1| (photosystem II 47 kDa protein (plastid) [Dioscorea rotundata])

HSP 1 Score: 218.8 bits (556), Expect = 7.4e-54
Identity = 111/161 (68.94%), Postives = 115/161 (71.43%), Query Frame = 1 

Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG- 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG 
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  ------------------DISNVETRRQGMF----VISCSYVFSGLCFLAAIWHWVYWDL 120
                              IS       G++    V     VFSGLCFLAAIWHWVYWDL
Sbjct: 61  FVIPFMTRLGITNSWGGWSISGGSITNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDL 120

Query: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL 139
           EIFCDERTGKPSLDLPKIFGIHLFLSGL  FGFG+FH  GL
Sbjct: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLACFGFGAFHVTGL 161

[Close]
BLAST of CmoCh17G009900 vs. NCBI nr
Match: gi|149390379|ref|YP_001294378.1| (photosystem II 47 kDa protein [Dioscorea elephantipes])

HSP 1 Score: 218.8 bits (556), Expect = 7.4e-54
Identity = 111/161 (68.94%), Postives = 115/161 (71.43%), Query Frame = 1 

Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG- 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG 
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  ------------------DISNVETRRQGMF----VISCSYVFSGLCFLAAIWHWVYWDL 120
                              IS       G++    V     VFSGLCFLAAIWHWVYWDL
Sbjct: 61  FVIPFMTRLGITNSWGGWSISGGSITNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDL 120

Query: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL 139
           EIFCDERTGKPSLDLPKIFGIHLFLSGL  FGFG+FH  GL
Sbjct: 121 EIFCDERTGKPSLDLPKIFGIHLFLSGLACFGFGAFHVTGL 161

The following BLAST results are available for this feature:
BLAST of CmoCh17G009900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBB_DIOEL4.6e-5668.94Photosystem II CP47 reaction center protein OS=Dioscorea elephantipes GN=psbB PE... [more]
PSBB_IPOPU7.9e-5662.16Photosystem II CP47 reaction center protein OS=Ipomoea purpurea GN=psbB PE=3 SV=... [more]
PSBB_LOBMA1.0e-5561.62Photosystem II CP47 reaction center protein OS=Lobularia maritima GN=psbB PE=3 S... [more]
PSBB_CAPBU1.0e-5561.62Photosystem II CP47 reaction center protein OS=Capsella bursa-pastoris GN=psbB P... [more]
PSBB_OLIPU1.3e-5561.62Photosystem II CP47 reaction center protein OS=Olimarabidopsis pumila GN=psbB PE... [more]
BLAST of CmoCh17G009900 vs. TrEMBL
Match NameE-valueIdentityDescription
K3Z2V7_SETIT1.4e-5473.79Photosystem II CP47 reaction center protein OS=Setaria italica GN=SETIT_020875mg... [more]
H2FAR2_PHOTN3.0e-5468.94Photosystem II CP47 reaction center protein OS=Phormium tenax GN=psbB PE=3 SV=1[more]
H2FAS3_9ASPA4.0e-5468.94Photosystem II CP47 reaction center protein OS=Eriospermum cervicorne GN=psbB PE... [more]
A0A0U3DFV0_9ROSI5.2e-5461.08Photosystem II CP47 reaction center protein OS=Aquilaria sinensis GN=psbB PE=3 S... [more]
A0A0D2X6X6_9APIA5.2e-5462.16Photosystem II CP47 reaction center protein OS=Tiedemannia filiformis subsp. gre... [more]
BLAST of CmoCh17G009900 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00680.11.7e-5661.08ATCG00680.1 photosystem II reaction center protein B[more]
BLAST of CmoCh17G009900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|944221242|gb|KQK85695.1|1.9e-5473.79hypothetical protein SETIT_020875mg [Setaria italica][more]
gi|372484207|gb|AEX95745.1|4.3e-5468.94photosystem II CP47 chlorophyll apoprotein (chloroplast) [Phormium tenax][more]
gi|372484229|gb|AEX95756.1|5.7e-5468.94photosystem II CP47 chlorophyll apoprotein (chloroplast) [Eriospermum cervicorne... [more]
gi|651249294|ref|YP_009033911.1|7.4e-5468.94photosystem II 47 kDa protein (plastid) [Dioscorea rotundata][more]
gi|149390379|ref|YP_001294378.1|7.4e-5468.94photosystem II 47 kDa protein [Dioscorea elephantipes][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000932PS_antenna-like
Vocabulary: Biological Process
TermDefinition
GO:0019684photosynthesis, light reaction
GO:0009767photosynthetic electron transport chain
Vocabulary: Cellular Component
TermDefinition
GO:0009521photosystem
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016168chlorophyll binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0008150 biological_process
cellular_component GO:0044425 membrane part
cellular_component GO:0009521 photosystem
cellular_component GO:0009536 plastid
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G009900.1CmoCh17G009900.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 1..61
score: 2.9E-29coord: 75..143
score: 1.7
IPR000932Photosystem antenna protein-likeunknownSSF161077Photosystem II antenna protein-likecoord: 2..154
score: 4.19
NoneNo IPR availablePANTHERPTHR33180FAMILY NOT NAMEDcoord: 1..138
score: 2.5
NoneNo IPR availablePANTHERPTHR33180:SF5PHOTOSYSTEM II CP47 CHLOROPHYLL APOPROTEINcoord: 1..138
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh17G009900Carg07100Silver-seed gourdcarcmoB0152
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G009900Cucurbita maxima (Rimu)cmacmoB466
CmoCh17G009900Cucurbita maxima (Rimu)cmacmoB896
CmoCh17G009900Wild cucumber (PI 183967)cmocpiB381
CmoCh17G009900Cucumber (Chinese Long) v2cmocuB378
CmoCh17G009900Melon (DHL92) v3.5.1cmomeB318
CmoCh17G009900Watermelon (Charleston Gray)cmowcgB299
CmoCh17G009900Watermelon (Charleston Gray)cmowcgB309
CmoCh17G009900Watermelon (97103) v1cmowmB322
CmoCh17G009900Watermelon (97103) v1cmowmB332
CmoCh17G009900Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G009900Cucurbita pepo (Zucchini)cmocpeB339
CmoCh17G009900Cucurbita pepo (Zucchini)cmocpeB367
CmoCh17G009900Bottle gourd (USVL1VR-Ls)cmolsiB337
CmoCh17G009900Bottle gourd (USVL1VR-Ls)cmolsiB340
CmoCh17G009900Cucumber (Gy14) v2cgybcmoB909
CmoCh17G009900Melon (DHL92) v3.6.1cmomedB365
CmoCh17G009900Silver-seed gourdcarcmoB0608
CmoCh17G009900Silver-seed gourdcarcmoB1032
CmoCh17G009900Silver-seed gourdcarcmoB1103
CmoCh17G009900Cucumber (Chinese Long) v3cmocucB0455
CmoCh17G009900Watermelon (97103) v2cmowmbB344
CmoCh17G009900Watermelon (97103) v2cmowmbB369
CmoCh17G009900Wax gourdcmowgoB0452
CmoCh17G009900Wax gourdcmowgoB0486
CmoCh17G009900Cucurbita moschata (Rifu)cmocmoB199
CmoCh17G009900Cucurbita moschata (Rifu)cmocmoB299
CmoCh17G009900Cucurbita moschata (Rifu)cmocmoB319
CmoCh17G009900Cucumber (Gy14) v1cgycmoB0340
CmoCh17G009900Cucurbita maxima (Rimu)cmacmoB254
CmoCh17G009900Cucurbita maxima (Rimu)cmacmoB353