CmoCh17G009470 (gene) Cucurbita moschata (Rifu)

NameCmoCh17G009470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
LocationCmo_Chr17 : 8398442 .. 8400614 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAACCCTAACCCTGCTTTGCAGAAAATTTTTGGAGGAAGATGACGCAGAAAGCAACCCTATTCAAAGGTCAACAGAAGAGGAAAACAATTCCTCCCAATCGCCATGGAAAAATCCCCCAAACTCGTAAAGGTATCTCTCTGTTCTTTTCCCTCCTTCTTATGCTAAATTTACGCGTAAAAATTACGATTTCTCCTCCTCCGTACTCACTGGGCGTTGTCTTTCCAGGGAAAAGAGTTGTGAAGCCATCAAAGACAACTAAAGAGATGGAAACAGATCGGGTATGTGTTATCTTTTCGTGTTTGTCCGGTAATTTATATGGAATCTAGTAACTGTGAGAGTAGAAACTTATGTTGATAAGTTGTTTTGTTGATGCTTTGTATTTTTAATGTTTCAAATACGAATTTCTTGCTTAATGTTGCATCGCCTTGTTAGTTTGCAATTCGTGTGAACTATTAATCATCCATTGTTTTGGTTAGATGAGAACATTTCTGAATTTTCTTGCCTTCTTATTTCCGAGAATGGATTTTGTGCGTGATTCTTAAGGCCTTTTCTCTTGGCTGAACTTGGTAGTTTCCCAGTTCTTTCAAATTCTACTGTGACATCTCGTAATGTGACTGCAGACTTTTTTGTTTCTACTTCTGCTGCATATATGCATCCATTCACATAATATTGGCCGTGATGAGTATCATCTCTTTGATTATGTTGGTAGCCGTTTGTGAGAAACTTTTCATGGCGAAGGAAAATTTGAAAAGTTTAAGTAAGGGGAAAGGAAGCTTCTCAACTTCACTCTCTAAGAATATGTTTCACCATAAAAAATTTATTTAGAAGCCCATCCAACCAATTATTGTCTACACTGCATCGCTTTGGAAGGATTGGATGAATGCAGAGAAGCAGGTTTCTCCTTTTTTAGGAATGATCTCTTGTGCAAAGATAGGATATCCATTTTTCGTTTGACAGAAAGAAAGTTGAAAAGTTAAGAAGCATTGTGCAAGGCCAAAGAGAGGATAGTTTTGGGTTTGAATAAATCATTCATTTCTAAATTATGAGATATTTGGTTGGTAGACCGAGATTTTATACTGCAGAAATGCTTTTGGGCTTTTGAAAGGAGAGGAGATGAGTAGTATTCTTGATTTGAGCGAAGTCATTTTTGTATATGCCTTTGAAATTTTCTTTGTATGAATTAGTTTTTTTTTCTTTTATCTGGTAATGGGACATTTGGAAAAGTGTCAAGCCTATATTTCCCTTTGCCCTATCTATCGATGACCATAAGCGAGGGAAACATAGTGGTCATGTTTGTGCTTGCCTTTTGTTTCTCTTGTACCTTTCTTTGTGTAAGGCTCCTCCTTTCAAGAGGAAGTATAAATTTCCTTGAACTAATATTAAATTTCGTAGTATGTGGGAGTAGTTAATTCTTAATAAAGAAAAAGAAAAATCTTGTGCAACTCCTTGGTTGTCACCCCTCTTCAAACTAGTCAATATTAATGGAAGGTTTCGTTTCTTATCATACTAAGTTCTTTTCTGGTAACGGCTCAGGCCCATCGTTAGCATATATTGTCGTCTTTGGACTTTCCCATTTGGGCTTCCCCTCAAGGCTTTAAAACACGTCTTCTAGGGAAAGGTTTCTACACTCTTATAAATGTGTATTTCATTCTCCTCCCCAACCAACGTGGGATATCTAATTTCCTATTTTAAAGTTGAGACTAGTATAGAATGGCTATAATGTTTGGGTGTATTCTTCTTCCTTGAAATGCTTTTTTGTTGGAAATCTATAGACTGTGCCGATAATTGTTCGCGTATTGGAATCACAAGCTTTAGATTACTTTTGCCGTTATATGTGGAGAATTTACGTAGTTCTATGAAAAAAAAAAAAACAGGAATTGAGCAAGTTCATCAATTACTGCAACGAGACGAAGGCTGCTACATTAGCAAACAAGGAAGGTGGGCAGCTGAGTATTGTGAAAACGCCGTCGGATGCTGCTGGTAATAGTAATAATGCAGCAAAGAAGTAAAGGAGGAGGATTTAGATTTTTGTGAGAATAGTGTGAAATTATTTGTGATGTTATTTCTTTCCCTTTTATTTTTCCATCTATGTCTTCTAACGCTTTTCTCAATTTTGTCGGCAGTAATCGGTTACTAATATATATATAAATTTGTTTCTACTTTTGTAAAA

mRNA sequence

ATAAACCCTAACCCTGCTTTGCAGAAAATTTTTGGAGGAAGATGACGCAGAAAGCAACCCTATTCAAAGGTCAACAGAAGAGGAAAACAATTCCTCCCAATCGCCATGGAAAAATCCCCCAAACTCGTAAAGGGAAAAGAGTTGTGAAGCCATCAAAGACAACTAAAGAGATGGAAACAGATCGGGAATTGAGCAAGTTCATCAATTACTGCAACGAGACGAAGGCTGCTACATTAGCAAACAAGGAAGGTGGGCAGCTGAGTATTGTGAAAACGCCGTCGGATGCTGCTGGTAATAGTAATAATGCAGCAAAGAAGTAAAGGAGGAGGATTTAGATTTTTGTGAGAATAGTGTGAAATTATTTGTGATGTTATTTCTTTCCCTTTTATTTTTCCATCTATGTCTTCTAACGCTTTTCTCAATTTTGTCGGCAGTAATCGGTTACTAATATATATATAAATTTGTTTCTACTTTTGTAAAA

Coding sequence (CDS)

ATGACGCAGAAAGCAACCCTATTCAAAGGTCAACAGAAGAGGAAAACAATTCCTCCCAATCGCCATGGAAAAATCCCCCAAACTCGTAAAGGGAAAAGAGTTGTGAAGCCATCAAAGACAACTAAAGAGATGGAAACAGATCGGGAATTGAGCAAGTTCATCAATTACTGCAACGAGACGAAGGCTGCTACATTAGCAAACAAGGAAGGTGGGCAGCTGAGTATTGTGAAAACGCCGTCGGATGCTGCTGGTAATAGTAATAATGCAGCAAAGAAGTAA
BLAST of CmoCh17G009470 vs. TrEMBL
Match: A0A0A0K6H9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420860 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.5e-33
Identity = 79/92 (85.87%), Postives = 84/92 (91.30%), Query Frame = 1

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKA LFKG+QK KTIPPNRHGKIPQTRKGKR VKPSKTTKEMETDRE+SKFINYCNET
Sbjct: 1  MTQKANLFKGKQKTKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 93
          KAATLANKEGGQLSIVKTP++A    N+ AKK
Sbjct: 61 KAATLANKEGGQLSIVKTPANA---DNSNAKK 89

BLAST of CmoCh17G009470 vs. TrEMBL
Match: A0A0D2T4A3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G112700 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-28
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 1

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQK  LFKGQ+K+KTIPPNRHGK+P  RKGKRVVKPSK TKEM+ DREL+KFIN+CNE 
Sbjct: 1  MTQKGNLFKGQKKQKTIPPNRHGKVPHIRKGKRVVKPSKMTKEMDADRELTKFINHCNEI 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGN 86
          KAAT+ANK+GGQLSIVK P +++GN
Sbjct: 61 KAATVANKDGGQLSIVKPPPESSGN 85

BLAST of CmoCh17G009470 vs. TrEMBL
Match: A0A103Y1I3_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_020940 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-28
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 1

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKA LFKGQQKRKT+PP+RHGK P+TRKGKRVVKP+K T+EM+TDRELSKFINYCNE 
Sbjct: 1  MTQKANLFKGQQKRKTVPPSRHGKTPKTRKGKRVVKPAKVTQEMDTDRELSKFINYCNEV 60

Query: 61 KAATLANKEGGQLSIVK 78
          KAAT ANKEGGQLSIVK
Sbjct: 61 KAATAANKEGGQLSIVK 77

BLAST of CmoCh17G009470 vs. TrEMBL
Match: A0A0B0Q2A1_GOSAR (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Gossypium arboreum GN=F383_14725 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-28
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 1

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQK  LFKGQ+K+KTIPPNRHGK+P  RKGKRVVKPSK TKEM+ DREL+KFIN+CNE 
Sbjct: 1  MTQKGNLFKGQKKQKTIPPNRHGKVPHIRKGKRVVKPSKMTKEMDADRELTKFINHCNEI 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGN 86
          KAAT+ANK+GGQLSIVK P +++GN
Sbjct: 61 KAATVANKDGGQLSIVKPPPESSGN 85

BLAST of CmoCh17G009470 vs. TrEMBL
Match: A0A067LG96_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16872 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-28
Identity = 71/92 (77.17%), Postives = 77/92 (83.70%), Query Frame = 1

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQK+ LFKGQQK+KTIP NRHGK+P  RKGKR VKPSK TKEM+ DRELSKFIN+CNE 
Sbjct: 1  MTQKSNLFKGQQKKKTIPSNRHGKVPVMRKGKRFVKPSKVTKEMDADRELSKFINHCNEV 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 93
          KAATLANKEGGQLSIVK P + AG    AAKK
Sbjct: 61 KAATLANKEGGQLSIVKAPPEPAG----AAKK 88

BLAST of CmoCh17G009470 vs. TAIR10
Match: AT3G52040.1 (AT3G52040.1 unknown protein)

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-25
Identity = 60/89 (67.42%), Postives = 69/89 (77.53%), Query Frame = 1

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQK+  FKGQQKRKTI PNRHGK  QTRKGKR VKP+K TKEM+TDREL+KFIN+CNE 
Sbjct: 1  MTQKSNQFKGQQKRKTIAPNRHGKSIQTRKGKRNVKPTKMTKEMDTDRELTKFINHCNEV 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNA 90
          KA   A KEGGQL+I+K  S    +  +A
Sbjct: 61 KATNAACKEGGQLNIIKAESQPEPSKKSA 89

BLAST of CmoCh17G009470 vs. NCBI nr
Match: gi|659122839|ref|XP_008461352.1| (PREDICTED: uncharacterized protein LOC103499958 [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 1.0e-33
Identity = 80/92 (86.96%), Postives = 85/92 (92.39%), Query Frame = 1

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKA LFKG+QKRKTIPPNRHGKIPQTRKGKR VKPSKTTKEMETDRE+SKFINYCNET
Sbjct: 1  MTQKANLFKGKQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 93
          KAATLANKEGGQLSIVKTP++A    N+ AKK
Sbjct: 61 KAATLANKEGGQLSIVKTPANA---DNSNAKK 89

BLAST of CmoCh17G009470 vs. NCBI nr
Match: gi|449436335|ref|XP_004135948.1| (PREDICTED: uncharacterized protein LOC101210742 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 5.1e-33
Identity = 79/92 (85.87%), Postives = 84/92 (91.30%), Query Frame = 1

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKA LFKG+QK KTIPPNRHGKIPQTRKGKR VKPSKTTKEMETDRE+SKFINYCNET
Sbjct: 1  MTQKANLFKGKQKTKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 93
          KAATLANKEGGQLSIVKTP++A    N+ AKK
Sbjct: 61 KAATLANKEGGQLSIVKTPANA---DNSNAKK 89

BLAST of CmoCh17G009470 vs. NCBI nr
Match: gi|976914717|gb|KVI00803.1| (hypothetical protein Ccrd_020940 [Cynara cardunculus var. scolymus])

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-28
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 1

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKA LFKGQQKRKT+PP+RHGK P+TRKGKRVVKP+K T+EM+TDRELSKFINYCNE 
Sbjct: 1  MTQKANLFKGQQKRKTVPPSRHGKTPKTRKGKRVVKPAKVTQEMDTDRELSKFINYCNEV 60

Query: 61 KAATLANKEGGQLSIVK 78
          KAAT ANKEGGQLSIVK
Sbjct: 61 KAATAANKEGGQLSIVK 77

BLAST of CmoCh17G009470 vs. NCBI nr
Match: gi|802555820|ref|XP_012065619.1| (PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas])

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-28
Identity = 71/92 (77.17%), Postives = 77/92 (83.70%), Query Frame = 1

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQK+ LFKGQQK+KTIP NRHGK+P  RKGKR VKPSK TKEM+ DRELSKFIN+CNE 
Sbjct: 1  MTQKSNLFKGQQKKKTIPSNRHGKVPVMRKGKRFVKPSKVTKEMDADRELSKFINHCNEV 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 93
          KAATLANKEGGQLSIVK P + AG    AAKK
Sbjct: 61 KAATLANKEGGQLSIVKAPPEPAG----AAKK 88

BLAST of CmoCh17G009470 vs. NCBI nr
Match: gi|823208272|ref|XP_012437586.1| (PREDICTED: uncharacterized protein LOC105763782 [Gossypium raimondii])

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-28
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 1

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQK  LFKGQ+K+KTIPPNRHGK+P  RKGKRVVKPSK TKEM+ DREL+KFIN+CNE 
Sbjct: 1  MTQKGNLFKGQKKQKTIPPNRHGKVPHIRKGKRVVKPSKMTKEMDADRELTKFINHCNEI 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGN 86
          KAAT+ANK+GGQLSIVK P +++GN
Sbjct: 61 KAATVANKDGGQLSIVKPPPESSGN 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K6H9_CUCSA3.5e-3385.87Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420860 PE=4 SV=1[more]
A0A0D2T4A3_GOSRA1.5e-2876.47Uncharacterized protein OS=Gossypium raimondii GN=B456_008G112700 PE=4 SV=1[more]
A0A103Y1I3_CYNCS1.5e-2885.71Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_020940 PE=4 ... [more]
A0A0B0Q2A1_GOSAR1.5e-2876.472,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Gossypium arboreum ... [more]
A0A067LG96_JATCU1.5e-2877.17Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16872 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G52040.11.1e-2567.42 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659122839|ref|XP_008461352.1|1.0e-3386.96PREDICTED: uncharacterized protein LOC103499958 [Cucumis melo][more]
gi|449436335|ref|XP_004135948.1|5.1e-3385.87PREDICTED: uncharacterized protein LOC101210742 [Cucumis sativus][more]
gi|976914717|gb|KVI00803.1|2.2e-2885.71hypothetical protein Ccrd_020940 [Cynara cardunculus var. scolymus][more]
gi|802555820|ref|XP_012065619.1|2.2e-2877.17PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas][more]
gi|823208272|ref|XP_012437586.1|2.2e-2876.47PREDICTED: uncharacterized protein LOC105763782 [Gossypium raimondii][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019034UPF0390
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G009470.1CmoCh17G009470.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019034Uncharacterised protein family UPF0390PFAMPF09495DUF2462coord: 1..79
score: 2.
NoneNo IPR availablePANTHERPTHR36769FAMILY NOT NAMEDcoord: 2..88
score: 1.2

The following gene(s) are paralogous to this gene:

None