CmoCh17G005940 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G005940
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDNA-directed RNA polymerase subunit beta
LocationCmo_Chr17 : 6301547 .. 6304971 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCAAGAAGTACTTGGTACTACGATCATTGGAGGAACAATACCTAAACCTGAGGATACTCCAGAATCTTTTCAATTGCTCGTTCGAGAATTACGATCTTTGGCTTTGGAACTGAATCATTTCCTTGTATCTGAGAAAAACTTCCAGATTAATAGGAAAAGGAAGCTTAATCAAAATGAATCAGAAAATTTTTTCTATGATCGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCGACAAATAAGTGCTTGGGCCAATAAAACCCTACCTAATGGCGAGATAGTTGGAGAGGTAACAAAACCCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGATGGATTATTTTGTGAAAGAATTTTCGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGAGTAATCGGAAATAAAAAAGAAGATTCGAAATTTTGTGAACAATGCGGAGTCGAATTGAGTGGTTAAAAGCAATAAAGGAAAACAAATATAAATATATATAAATATATATATATATATATATATACACATAGATATATAGATATATAGATATATCGATACATAGATACATAGATATATAGATATATAGATATATAGATATATCGATACATAGATACATAGATATATAGATATATAGATATAGATACATAGATACATAGATATATAGATATAGATAGATAGATATAAAGTGTGGCAGGTGCCACCGTACACTATCGCCAATGATGAGTCATAAGCCATAGGTGACGAAAGACAGCTCAAGTCCAGCCATTTGAGAGTGGAAGAAGGAGATTTAAGGAGACGTGAGTCCCAGCTTAAAGTGTACTTTGTTAGAGGGGAGGATTGTTGAGGATTATTGGGAGTGAGTCCCACATGGGTTAATTTAGTGGATCTACCTGCTTGAAGAATCTGACTCAAACCCACATTTCGTTAGAGGTTTCACACCTAAGATTTGCAAGCGTCCACAGTTGATTTGGGGGAAAAGTGTTAGCACTCCTAATGTTTGACTTGAAGCTTAAGGTCAGGGGAGATGAAGGTTGGAAGAGGTGAATATAGATAACATAAGGTACGTGACCATACTAATTATAACGGAAAAGTATCATGATGCACACGACATACGTAAATGCATGAACTCCCCATATCATTGCATAAGCTTATGATGTAAGTCATACTCAATTCATTCATGACATAACGAACCTATGAGAAATGCAAACATAATTCTTGTCATATCTTTCATCATTAACATACATGACTTCCTCATGTCTCATAGGAATGAAGTGAACATGTTAACATAGTTTACATGACATGATATAGGGAGGTTTGTACATCGTATATCATTGATATTATAGCATAGTTCCATGACAGGGAATTTATAACATGTCATAGCATAATATAACATAACATCACATAGCACATACTAACGGGCTTAATACATCGTACAAGTCGTCCAACTAAGTCAACAATGAAGTCACTATACTTATTTGAGGTCGCTAAACTTGTTTATATAGACCAGAGTCACTATACTTTTCTTAAAGCTAGCCTAAGGGATTCGAGGACAGACAGTCAGGACATATTAATGACTTAATTCAGCAAATGACCATCAATTGATTATCAAACTTAGTTCCAAAAATTTTAACAGCTTAAACAATTATCATATTGACCTCAATACTTCCAATAATCTCAAACGACCTTGGCTAGTCTTGGCTTAACACAGAGATGGGATGGACACGCTGGCCGAATGTGGAGTGGACTGGACACGTGGGTTGCTTGGCTTTACTCGCACATGGACCCGCGGTTCAGACAAGCTGTTTGCCGCGGCTCATGTTCAAATTTTGCTTTGGTTTTTGAACCAAAGACTTAGAAATGAGCCTAACTTCTTTTTGTCTTATTTTGATTGATTATTGGCCTCTTTTTATGATGGATTTGCGACGTAAATTTTGTAGAACACAAAAACCATTTATTATTTATTTTTCTAACCCAAATCGAAACAAACAAAATAAAATTGATGGCTTTTTAAAATCCAAAATAGGACTTATCGAACCTGTCTTATTCTTATGGCAATTCTTCGTTCACGGATGGATTTACGTGATGTCAGAAACGGTGGGAGCATTCTAACGGTTTCTAAACCTGTGTTATTATTATTGTAGTTTTCTTGGTTTTTACATTTACCAATTATGTGACTTTGTAGATTTTCCAAGCGGAGTTGAGTGTGTAGACGAGAAGTTAACAACTCGATAGGATCTTCTCTCCTTAAACATGTCCAAAGATGAGAAATCACACCGTGCATTAGTCAAGACTAGGCATCAAACCGACCATGCTTTATGACCACCAAGGTTCTTAGATCAAAATCCATGTTATGTCTTTTGCTCAAGTTTTAGAGTTCGGTAATCTTTTATGAGTTATGGACACAATCAAGAGCCTACAAGTAGACTACTCACTTAATTTTGTACTCACTCTACTTTTTATATATTTTTCCAGGTAATAACTAGATGTTGGTCAAGTATGGGAGCGAATCTAAGGTAGGTACCATAGAGAACCAACCCCAATAACCTTTACCAGTTATGGTAATTTTGTCTCAGTCTAGTTTTTGTATTACGTTCTCTTTATATGTTTACGCTCAGACTTGTATATCTATGTTTACGATGTTTTGGTTAGTGTTTTGCAAGTAGCTATAGTTAAAGGGAGATTTTTTTTTTTTTGTTTGTTTGTTTGTTAATGTTAAGTACGTATGCACACATGTGATTCTATTCTATGGTTTATATGATTGTGATGTATCATAAAGCATGTTTTAACTTTGGTTACAGGTATTCGTATAGTGGTGGACCTTGTATTGCTTGATTATGTACGGAGAATCAACGCATGATTTTAGACCCTTATAGATGGTCCATAATTTTTGAAAACTACTCATCAACAATATGAGGTGGGTGGTGAGTATCTCCATGTGCCAGTCAGAATCGAGCTAGACAATTTTGATACAGGGTAGGTCATGAACAAATGACCATATTTTAAAAGTAAAATCAGCCCCGTGATTTTGGTCTCAATGACCATTTGGAAAGATATAAATAGAGAGTTTTTGGGATCAAAATAGCAAGAAAAATGAACCTTGAAAGTGTATATACCAAAATGATCCAAGCTAAGAAAGTGTATAGCTCAATGATATTATTTCAAACTTAAATTTAAGTATTCCAGAGAATTAGTTCAAAATTAAAGAGTTAGTGTATAGCCAAAATATCAAAGTACTGGGAAAGCTATATCATTGTTGTGTTATGTTCTTGGAGTTGTTGGAGGTAGCAAAACAAATTTGCCATCCGTGACTCCAATTTGTCTTCAAATGGTAATATTCTTTTTCTTTTTCTTTTTCTACGAACAGTACTAA

mRNA sequence

ATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCAAGAAGTACTTGGTACTACGATCATTGGAGGAACAATACCTAAACCTGAGGATACTCCAGAATCTTTTCAATTGCTCGTTCGAGAATTACGATCTTTGGCTTTGGAACTGAATCATTTCCTTAAAATTTTTTCTATGATCGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCGACAAATAAGTGCTTGGGCCAATAAAACCCTACCTAATGGCGAGATAGTTGGAGAGGTAACAAAACCCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGATGGATTATTTTGTGAAAGAATTTTCGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGATACTAA

Coding sequence (CDS)

ATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCAAGAAGTACTTGGTACTACGATCATTGGAGGAACAATACCTAAACCTGAGGATACTCCAGAATCTTTTCAATTGCTCGTTCGAGAATTACGATCTTTGGCTTTGGAACTGAATCATTTCCTTAAAATTTTTTCTATGATCGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCGACAAATAAGTGCTTGGGCCAATAAAACCCTACCTAATGGCGAGATAGTTGGAGAGGTAACAAAACCCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGATGGATTATTTTGTGAAAGAATTTTCGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGATACTAA
Homology
[Close]
BLAST of CmoCh17G005940 vs. Swiss-Prot
Match: RPOC1_CUCSA (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 165.6 bits (418), Expect = 3.6e-40
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 58  MIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 117
           MIDRYKHQQLRIGLVSP+QISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 118 FGPIKSGICACGNYR 133
           FGPIKSGICACGNYR
Sbjct: 61  FGPIKSGICACGNYR 75

[Close]
BLAST of CmoCh17G005940 vs. Swiss-Prot
Match: RPOC1_LEMMI (DNA-directed RNA polymerase subunit beta' OS=Lemna minor GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-39
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 1 

Query: 56  FSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCE 115
           +SMIDRYKHQQLRIG VSP+QISAWANK LPNGE+VGEVTKPYTFHYKTNKPEKDGLFCE
Sbjct: 6   YSMIDRYKHQQLRIGPVSPQQISAWANKILPNGEVVGEVTKPYTFHYKTNKPEKDGLFCE 65

Query: 116 RIFGPIKSGICACGNYR 133
           RIFGPIKSGICACGNYR
Sbjct: 66  RIFGPIKSGICACGNYR 82

[Close]
BLAST of CmoCh17G005940 vs. Swiss-Prot
Match: RPOC1_BUXMI (DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.0e-39
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1 

Query: 58  MIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 117
           MIDRYKHQQLRIGLVSP+QISAWANK LPNGEIVGEVTKPYTFHYKTNKPE+DGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKILPNGEIVGEVTKPYTFHYKTNKPERDGLFCERI 60

Query: 118 FGPIKSGICACGNYR 133
           FGPIKSGICACGNYR
Sbjct: 61  FGPIKSGICACGNYR 75

[Close]
BLAST of CmoCh17G005940 vs. Swiss-Prot
Match: RPOC1_CARPA (DNA-directed RNA polymerase subunit beta' OS=Carica papaya GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.0e-39
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1 

Query: 58  MIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 117
           MIDRYKHQQLRIGLVSP+QISAWAN+ LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANRILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 118 FGPIKSGICACGNYR 133
           FGPIKSGICACGNYR
Sbjct: 61  FGPIKSGICACGNYR 75

[Close]
BLAST of CmoCh17G005940 vs. Swiss-Prot
Match: RPOC1_COFAR (DNA-directed RNA polymerase subunit beta' OS=Coffea arabica GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 9.0e-39
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 1 

Query: 58  MIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 117
           MIDRYKHQQLRIGLVSP+QISAWA K LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 118 FGPIKSGICACGNYR 133
           FGPIKSGICACGNYR
Sbjct: 61  FGPIKSGICACGNYR 75

[Close]
BLAST of CmoCh17G005940 vs. TrEMBL
Match: S8D4Z9_9LAMI (DNA-directed RNA polymerase subunit beta (Fragment) OS=Genlisea aurea GN=M569_00269 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 6.9e-62
Identity = 119/141 (84.40%), Postives = 123/141 (87.23%), Query Frame = 1 

Query: 1    MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFLK------ 60
            MLTYKSDHIRARQEVLGTTIIGGTIP P+DTPESF+LLVRELRSLALELNH L+      
Sbjct: 1004 MLTYKSDHIRARQEVLGTTIIGGTIPNPQDTPESFRLLVRELRSLALELNHCLEESLIGI 1063

Query: 61   ---IFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDG 120
                 SMIDRYKHQQLRIGLVSP QI AWA K LPNG+IVGEVTKPYTFHYKTNKPE DG
Sbjct: 1064 NHNFSSMIDRYKHQQLRIGLVSPEQIRAWATKILPNGKIVGEVTKPYTFHYKTNKPEMDG 1123

Query: 121  LFCERIFGPIKSGICACGNYR 133
            LFCERIFGPIKSGICACGNYR
Sbjct: 1124 LFCERIFGPIKSGICACGNYR 1144

[Close]
BLAST of CmoCh17G005940 vs. TrEMBL
Match: D7KRC2_ARALL (DNA-directed RNA polymerase subunit OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_893971 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.0e-61
Identity = 118/135 (87.41%), Postives = 123/135 (91.11%), Query Frame = 1 

Query: 1    MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLA---LELNHFLKIFS 60
            MLTYKSDHIRARQEVLGTTIIGGTIPKPED PESF+LLVRELRSL    + +NH  KI  
Sbjct: 1007 MLTYKSDHIRARQEVLGTTIIGGTIPKPEDAPESFRLLVRELRSLEGSLIGMNH--KISY 1066

Query: 61   MIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 120
            MIDRYKHQQLRIGLVSP+QISAWA K +PNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1067 MIDRYKHQQLRIGLVSPQQISAWATKIIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 1126

Query: 121  FGPIKSGICACGNYR 133
            FGPIKSGICACGNYR
Sbjct: 1127 FGPIKSGICACGNYR 1139

[Close]
BLAST of CmoCh17G005940 vs. TrEMBL
Match: A0A0D2NE38_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G1677001 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.9e-59
Identity = 116/133 (87.22%), Postives = 119/133 (89.47%), Query Frame = 1 

Query: 1   MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFLKIFS-MI 60
           MLTYKSDHIRARQEVLGTTIIGGTIPKPED PESF+LLVRELRSL   L    + FS MI
Sbjct: 168 MLTYKSDHIRARQEVLGTTIIGGTIPKPEDAPESFRLLVRELRSLEGSLIGMNQNFSSMI 227

Query: 61  DRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFG 120
           DRYKHQQLRIG VSP+QISAWA K LPNGE VGEVTKPYTFHYKTNKPEKDGLFCERIFG
Sbjct: 228 DRYKHQQLRIGSVSPQQISAWAKKILPNGETVGEVTKPYTFHYKTNKPEKDGLFCERIFG 287

Query: 121 PIKSGICACGNYR 133
           PIKSGICACGNYR
Sbjct: 288 PIKSGICACGNYR 300

[Close]
BLAST of CmoCh17G005940 vs. TrEMBL
Match: G7JG05_MEDTR (DNA-directed RNA polymerase subunit OS=Medicago truncatula GN=MTR_4g051130 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.2e-59
Identity = 116/136 (85.29%), Postives = 120/136 (88.24%), Query Frame = 1 

Query: 1    MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFL---KIFS 60
            MLTYKSDHI+ARQEVLGTTIIGGTIPKP D PESF+LLVRELRSLALELNHFL   K F 
Sbjct: 992  MLTYKSDHIKARQEVLGTTIIGGTIPKPVDAPESFRLLVRELRSLALELNHFLVSEKDFQ 1051

Query: 61   MIDR-YKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCER 120
            +  + YKHQ LRIG VSP QISAWA K LPNGEIVGEVTKPYT HYKTNKPEKDGLFCER
Sbjct: 1052 IQRKEYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCER 1111

Query: 121  IFGPIKSGICACGNYR 133
            IFGPIKSGICACGNYR
Sbjct: 1112 IFGPIKSGICACGNYR 1127

[Close]
BLAST of CmoCh17G005940 vs. TrEMBL
Match: U5CL83_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s01499p00009870 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 8.7e-57
Identity = 112/147 (76.19%), Postives = 119/147 (80.95%), Query Frame = 1 

Query: 1   MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFL------- 60
           MLTYKSD IRA +E LGT I+GGTIPKPE  PESF+LLVRELRSLALEL HFL       
Sbjct: 167 MLTYKSDPIRALKEQLGTMIVGGTIPKPEGAPESFRLLVRELRSLALELKHFLVSEKNFQ 226

Query: 61  ---------KIFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKT 120
                       SMIDRYKHQQLRIGLVSP+Q +AWANK LPNGE+VGEVTKPYTFHYK+
Sbjct: 227 INRKVGMNQNFSSMIDRYKHQQLRIGLVSPQQRTAWANKILPNGEMVGEVTKPYTFHYKS 286

Query: 121 NKPEKDGLFCERIFGPIKSGICACGNY 132
           NKPEKDGLFCERIFGPIKSGICACGNY
Sbjct: 287 NKPEKDGLFCERIFGPIKSGICACGNY 313

[Close]
BLAST of CmoCh17G005940 vs. TAIR10
Match: ATCG00180.1 (ATCG00180.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 160.2 bits (404), Expect = 8.6e-40
Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = 1 

Query: 58  MIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 117
           MIDRYKHQQLRIGLVSP+QISAWA K +PNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWATKIIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 118 FGPIKSGICACGNYR 133
           FGPIKSGICACGNYR
Sbjct: 61  FGPIKSGICACGNYR 75

[Close]
BLAST of CmoCh17G005940 vs. TAIR10
Match: ATCG00190.1 (ATCG00190.1 RNA polymerase subunit beta)

HSP 1 Score: 105.1 bits (261), Expect = 3.3e-23
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 1    MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFL 54
            MLTYKSDHIRARQEVLGTTIIGGTIPKPED PESF+LLVRELRSLALELNHFL
Sbjct: 1007 MLTYKSDHIRARQEVLGTTIIGGTIPKPEDAPESFRLLVRELRSLALELNHFL 1059

[Close]
BLAST of CmoCh17G005940 vs. NCBI nr
Match: gi|527209868|gb|EPS74480.1| (hypothetical protein M569_00269, partial [Genlisea aurea])

HSP 1 Score: 244.6 bits (623), Expect = 9.9e-62
Identity = 119/141 (84.40%), Postives = 123/141 (87.23%), Query Frame = 1 

Query: 1    MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFLK------ 60
            MLTYKSDHIRARQEVLGTTIIGGTIP P+DTPESF+LLVRELRSLALELNH L+      
Sbjct: 1004 MLTYKSDHIRARQEVLGTTIIGGTIPNPQDTPESFRLLVRELRSLALELNHCLEESLIGI 1063

Query: 61   ---IFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDG 120
                 SMIDRYKHQQLRIGLVSP QI AWA K LPNG+IVGEVTKPYTFHYKTNKPE DG
Sbjct: 1064 NHNFSSMIDRYKHQQLRIGLVSPEQIRAWATKILPNGKIVGEVTKPYTFHYKTNKPEMDG 1123

Query: 121  LFCERIFGPIKSGICACGNYR 133
            LFCERIFGPIKSGICACGNYR
Sbjct: 1124 LFCERIFGPIKSGICACGNYR 1144

[Close]
BLAST of CmoCh17G005940 vs. NCBI nr
Match: gi|297837963|ref|XP_002886863.1| (hypothetical protein ARALYDRAFT_893971 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 243.0 bits (619), Expect = 2.9e-61
Identity = 118/135 (87.41%), Postives = 123/135 (91.11%), Query Frame = 1 

Query: 1    MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLA---LELNHFLKIFS 60
            MLTYKSDHIRARQEVLGTTIIGGTIPKPED PESF+LLVRELRSL    + +NH  KI  
Sbjct: 1007 MLTYKSDHIRARQEVLGTTIIGGTIPKPEDAPESFRLLVRELRSLEGSLIGMNH--KISY 1066

Query: 61   MIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 120
            MIDRYKHQQLRIGLVSP+QISAWA K +PNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1067 MIDRYKHQQLRIGLVSPQQISAWATKIIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 1126

Query: 121  FGPIKSGICACGNYR 133
            FGPIKSGICACGNYR
Sbjct: 1127 FGPIKSGICACGNYR 1139

[Close]
BLAST of CmoCh17G005940 vs. NCBI nr
Match: gi|763763663|gb|KJB30917.1| (hypothetical protein B456_005G1677001, partial [Gossypium raimondii])

HSP 1 Score: 236.5 bits (602), Expect = 2.7e-59
Identity = 116/133 (87.22%), Postives = 119/133 (89.47%), Query Frame = 1 

Query: 1   MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFLKIFS-MI 60
           MLTYKSDHIRARQEVLGTTIIGGTIPKPED PESF+LLVRELRSL   L    + FS MI
Sbjct: 168 MLTYKSDHIRARQEVLGTTIIGGTIPKPEDAPESFRLLVRELRSLEGSLIGMNQNFSSMI 227

Query: 61  DRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFG 120
           DRYKHQQLRIG VSP+QISAWA K LPNGE VGEVTKPYTFHYKTNKPEKDGLFCERIFG
Sbjct: 228 DRYKHQQLRIGSVSPQQISAWAKKILPNGETVGEVTKPYTFHYKTNKPEKDGLFCERIFG 287

Query: 121 PIKSGICACGNYR 133
           PIKSGICACGNYR
Sbjct: 288 PIKSGICACGNYR 300

[Close]
BLAST of CmoCh17G005940 vs. NCBI nr
Match: gi|357471497|ref|XP_003606033.1| (DNA-directed RNA polymerase subunit beta [Medicago truncatula])

HSP 1 Score: 235.3 bits (599), Expect = 6.0e-59
Identity = 116/136 (85.29%), Postives = 120/136 (88.24%), Query Frame = 1 

Query: 1    MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFL---KIFS 60
            MLTYKSDHI+ARQEVLGTTIIGGTIPKP D PESF+LLVRELRSLALELNHFL   K F 
Sbjct: 992  MLTYKSDHIKARQEVLGTTIIGGTIPKPVDAPESFRLLVRELRSLALELNHFLVSEKDFQ 1051

Query: 61   MIDR-YKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCER 120
            +  + YKHQ LRIG VSP QISAWA K LPNGEIVGEVTKPYT HYKTNKPEKDGLFCER
Sbjct: 1052 IQRKEYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCER 1111

Query: 121  IFGPIKSGICACGNYR 133
            IFGPIKSGICACGNYR
Sbjct: 1112 IFGPIKSGICACGNYR 1127

[Close]
BLAST of CmoCh17G005940 vs. NCBI nr
Match: gi|548837722|gb|ERM98365.1| (hypothetical protein AMTR_s01499p00009870 [Amborella trichopoda])

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-56
Identity = 112/147 (76.19%), Postives = 119/147 (80.95%), Query Frame = 1 

Query: 1   MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFL------- 60
           MLTYKSD IRA +E LGT I+GGTIPKPE  PESF+LLVRELRSLALEL HFL       
Sbjct: 167 MLTYKSDPIRALKEQLGTMIVGGTIPKPEGAPESFRLLVRELRSLALELKHFLVSEKNFQ 226

Query: 61  ---------KIFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKT 120
                       SMIDRYKHQQLRIGLVSP+Q +AWANK LPNGE+VGEVTKPYTFHYK+
Sbjct: 227 INRKVGMNQNFSSMIDRYKHQQLRIGLVSPQQRTAWANKILPNGEMVGEVTKPYTFHYKS 286

Query: 121 NKPEKDGLFCERIFGPIKSGICACGNY 132
           NKPEKDGLFCERIFGPIKSGICACGNY
Sbjct: 287 NKPEKDGLFCERIFGPIKSGICACGNY 313

The following BLAST results are available for this feature:
BLAST of CmoCh17G005940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPOC1_CUCSA3.6e-4098.67DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus GN=rpoC1 PE=3 SV=3[more]
RPOC1_LEMMI2.4e-3993.51DNA-directed RNA polymerase subunit beta' OS=Lemna minor GN=rpoC1 PE=3 SV=1[more]
RPOC1_BUXMI4.0e-3996.00DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla GN=rpoC1 PE=3 SV=... [more]
RPOC1_CARPA4.0e-3996.00DNA-directed RNA polymerase subunit beta' OS=Carica papaya GN=rpoC1 PE=3 SV=1[more]
RPOC1_COFAR9.0e-3996.00DNA-directed RNA polymerase subunit beta' OS=Coffea arabica GN=rpoC1 PE=3 SV=1[more]
BLAST of CmoCh17G005940 vs. TrEMBL
Match NameE-valueIdentityDescription
S8D4Z9_9LAMI6.9e-6284.40DNA-directed RNA polymerase subunit beta (Fragment) OS=Genlisea aurea GN=M569_00... [more]
D7KRC2_ARALL2.0e-6187.41DNA-directed RNA polymerase subunit OS=Arabidopsis lyrata subsp. lyrata GN=ARALY... [more]
A0A0D2NE38_GOSRA1.9e-5987.22Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G1677001 PE... [more]
G7JG05_MEDTR4.2e-5985.29DNA-directed RNA polymerase subunit OS=Medicago truncatula GN=MTR_4g051130 PE=3 ... [more]
U5CL83_AMBTC8.7e-5776.19Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s01499p00009870 PE=4 SV=... [more]
BLAST of CmoCh17G005940 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00180.18.6e-4094.67ATCG00180.1 DNA-directed RNA polymerase family protein[more]
ATCG00190.13.3e-2396.23ATCG00190.1 RNA polymerase subunit beta[more]
BLAST of CmoCh17G005940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|527209868|gb|EPS74480.1|9.9e-6284.40hypothetical protein M569_00269, partial [Genlisea aurea][more]
gi|297837963|ref|XP_002886863.1|2.9e-6187.41hypothetical protein ARALYDRAFT_893971 [Arabidopsis lyrata subsp. lyrata][more]
gi|763763663|gb|KJB30917.1|2.7e-5987.22hypothetical protein B456_005G1677001, partial [Gossypium raimondii][more]
gi|357471497|ref|XP_003606033.1|6.0e-5985.29DNA-directed RNA polymerase subunit beta [Medicago truncatula][more]
gi|548837722|gb|ERM98365.1|1.2e-5676.19hypothetical protein AMTR_s01499p00009870 [Amborella trichopoda][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007080RNA_pol_Rpb1_1
IPR007641RNA_pol_Rpb2_7
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed RNA polymerase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005730 nucleolus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G005940.1CmoCh17G005940.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007080RNA polymerase Rpb1, domain 1PFAMPF04997RNA_pol_Rpb1_1coord: 65..131
score: 2.
IPR007641RNA polymerase Rpb2, domain 7PFAMPF04560RNA_pol_Rpb2_7coord: 1..53
score: 7.
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 52..132
score: 3.9
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..60
score: 1.62E-6coord: 64..132
score: 3.85

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G005940Wild cucumber (PI 183967)cmocpiB367
CmoCh17G005940Cucumber (Chinese Long) v2cmocuB363
CmoCh17G005940Melon (DHL92) v3.5.1cmomeB310
CmoCh17G005940Watermelon (Charleston Gray)cmowcgB320
CmoCh17G005940Watermelon (97103) v1cmowmB350
CmoCh17G005940Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G005940Cucurbita pepo (Zucchini)cmocpeB356
CmoCh17G005940Bottle gourd (USVL1VR-Ls)cmolsiB324
CmoCh17G005940Cucumber (Gy14) v2cgybcmoB740
CmoCh17G005940Melon (DHL92) v3.6.1cmomedB355
CmoCh17G005940Silver-seed gourdcarcmoB0118
CmoCh17G005940Silver-seed gourdcarcmoB1037
CmoCh17G005940Cucumber (Chinese Long) v3cmocucB0439
CmoCh17G005940Watermelon (97103) v2cmowmbB356
CmoCh17G005940Wax gourdcmowgoB0460
CmoCh17G005940Wax gourdcmowgoB0467
CmoCh17G005940Cucurbita moschata (Rifu)cmocmoB327
CmoCh17G005940Cucumber (Gy14) v1cgycmoB1002
CmoCh17G005940Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G005940Cucurbita maxima (Rimu)cmacmoB903