CmoCh17G005510 (gene) Cucurbita moschata (Rifu)

NameCmoCh17G005510
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionrRNA N-glycosidase (3.2.2.22)
LocationCmo_Chr17 : 5594526 .. 5594855 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAACAATGCAAAGGTTTGGTTGGAGAAGTGTGTGGAGAAGAAGGCAGAGCAATATTGGGCGGTTTATAGTGATGGAAGTATAAGAGTAAATAGTAGCCGTAATTTCTGTGTGTCGGCAGCTTCAGATTCGCCAGGGGGGCTTATTACCATCACTAAGTGCAATGGATCATCAAAGCAACGATGGGTTTTCATGGCGGATGCCACAATTTTGAACCCCAAATCTGGGTTGGTCATGGAGGTTGAAGGCTCTCAAGTTTCCCGAAACAAAATTATTTTATACCCCATAAAGGGTCGTTCTAGCCAACAATGGACTTTGTTCTACTAA

mRNA sequence

ATGGATAACAATGCAAAGGTTTGGTTGGAGAAGTGTGTGGAGAAGAAGGCAGAGCAATATTGGGCGGTTTATAGTGATGGAAGTATAAGAGTAAATAGTAGCCGTAATTTCTGTGTGTCGGCAGCTTCAGATTCGCCAGGGGGGCTTATTACCATCACTAAGTGCAATGGATCATCAAAGCAACGATGGGTTTTCATGGCGGATGCCACAATTTTGAACCCCAAATCTGGGTTGGTCATGGAGGTTGAAGGCTCTCAAGTTTCCCGAAACAAAATTATTTTATACCCCATAAAGGGTCGTTCTAGCCAACAATGGACTTTGTTCTACTAA

Coding sequence (CDS)

ATGGATAACAATGCAAAGGTTTGGTTGGAGAAGTGTGTGGAGAAGAAGGCAGAGCAATATTGGGCGGTTTATAGTGATGGAAGTATAAGAGTAAATAGTAGCCGTAATTTCTGTGTGTCGGCAGCTTCAGATTCGCCAGGGGGGCTTATTACCATCACTAAGTGCAATGGATCATCAAAGCAACGATGGGTTTTCATGGCGGATGCCACAATTTTGAACCCCAAATCTGGGTTGGTCATGGAGGTTGAAGGCTCTCAAGTTTCCCGAAACAAAATTATTTTATACCCCATAAAGGGTCGTTCTAGCCAACAATGGACTTTGTTCTACTAA
BLAST of CmoCh17G005510 vs. Swiss-Prot
Match: SGSL_TRIAN (Seed lectin (Fragments) OS=Trichosanthes anguina PE=1 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 7.4e-23
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 1

Query: 2   DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGG--LITITKCNGSS 61
           D N  +WLE+CV  + EQ WA+YSDG+IRV+ +R  CV+A+S +     +ITI  C+GS+
Sbjct: 409 DGNTNMWLEECVPNQREQSWALYSDGTIRVDDNRELCVTASSSTYDNWKVITILNCDGSN 468

Query: 62  KQRWVFMADATILNP-KSGLVMEVEGSQVSRNKIILYPIKGRSSQQWTLFY 110
            QRWVF+AD +I  P    L M+V  S V   KIIL+   G  +QQW LFY
Sbjct: 469 NQRWVFLADGSISTPGNQRLAMDVARSDVDLKKIILHRPHGDLNQQWVLFY 519

BLAST of CmoCh17G005510 vs. Swiss-Prot
Match: NIGB_SAMNI (Nigrin b OS=Sambucus nigra PE=1 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20
Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = 1

Query: 4   NAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRW 63
           N  VW+E C     +Q WA+Y D +IRVNS+R  CV+    +   LI I KC G   QRW
Sbjct: 455 NNGVWMEDCEATSLQQQWALYGDRTIRVNSTRGLCVTTNGYNSKDLIIILKCQGLPSQRW 514

Query: 64  VFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRSSQQW 106
            F +D  I+NPKS  VM+V  S VS  +II++P  G  +QQW
Sbjct: 515 FFNSDGAIVNPKSRHVMDVRASNVSLREIIIFPATGNPNQQW 556

BLAST of CmoCh17G005510 vs. Swiss-Prot
Match: RICI_RICCO (Ricin OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.5e-20
Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = 1

Query: 3   NNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCN-GSSKQ 62
           N+ +VW+E C  +KAEQ WA+Y+DGSIR   +R+ C+++ S+    ++ I  C   SS Q
Sbjct: 469 NSGQVWIEDCSSEKAEQQWALYADGSIRPQQNRDNCLTSDSNIRETVVKILSCGPASSGQ 528

Query: 63  RWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRSSQQW 106
           RW+F  D TILN  SGLV++V  S  S  +IILYP+ G  +Q W
Sbjct: 529 RWMFKNDGTILNLYSGLVLDVRASDPSLKQIILYPLHGDPNQIW 572

BLAST of CmoCh17G005510 vs. Swiss-Prot
Match: AGGL_RICCO (Agglutinin OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.9e-20
Identity = 47/104 (45.19%), Postives = 67/104 (64.42%), Query Frame = 1

Query: 3   NNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCN-GSSKQ 62
           N+ KVWLE C  +KAEQ WA+Y+DGSIR   +R+ C++  ++  G ++ I  C   SS Q
Sbjct: 457 NSGKVWLEDCTSEKAEQQWALYADGSIRPQQNRDNCLTTDANIKGTVVKILSCGPASSGQ 516

Query: 63  RWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRSSQQW 106
           RW+F  D TILN  +GLV++V  S  S  +II++P  G  +Q W
Sbjct: 517 RWMFKNDGTILNLYNGLVLDVRRSDPSLKQIIVHPFHGNLNQIW 560

BLAST of CmoCh17G005510 vs. Swiss-Prot
Match: ML3_VISAL (Beta-galactoside-specific lectin 3 OS=Viscum album PE=1 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-19
Identity = 47/104 (45.19%), Postives = 62/104 (59.62%), Query Frame = 1

Query: 3   NNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCN-GSSKQ 62
           N A VW+E C      Q WA+Y DGSIR   +++ C++   DS   +I I  C+ GSS Q
Sbjct: 462 NGASVWVETCGSSTENQNWALYGDGSIRPKQNQDQCLTCQGDSVATVINIVSCSAGSSGQ 521

Query: 63  RWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRSSQQW 106
           RWVF  + TILN  +GLVM+V  S  S  +II+YP  G  +Q W
Sbjct: 522 RWVFTNEGTILNLNNGLVMDVAQSNPSLRRIIIYPATGNPNQMW 565

BLAST of CmoCh17G005510 vs. TrEMBL
Match: A0A0A0K979_CUCSA (rRNA N-glycosidase OS=Cucumis sativus GN=Csa_6G040650 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.7e-32
Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 1

Query: 2   DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQ 61
           +NN  +WLEKCV+ KAEQYWAVYSDGSIRVN  RN CVS++S+  G L+ I +C G+S Q
Sbjct: 433 NNNTNMWLEKCVKNKAEQYWAVYSDGSIRVNRKRNLCVSSSSNRSGALLIIDECKGTSNQ 492

Query: 62  RWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRSSQQWTLFY 110
           RW F+A+ TILNP++  V++V GS VS  +IILYP  G ++QQWTLFY
Sbjct: 493 RWNFLANGTILNPETKKVVDVYGSMVSAKRIILYPKTGLANQQWTLFY 540

BLAST of CmoCh17G005510 vs. TrEMBL
Match: O22415_SAMNI (rRNA N-glycosidase OS=Sambucus nigra GN=LECSNA-If PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.9e-24
Identity = 56/102 (54.90%), Postives = 67/102 (65.69%), Query Frame = 1

Query: 4   NAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRW 63
           N  VWLE CV  + EQ WA+Y DG+IRVNS+R+ CV++    P  LI I KC GS  QRW
Sbjct: 462 NNFVWLEDCVLNRVEQEWALYGDGTIRVNSNRSLCVTSEDHEPSDLIVILKCEGSGNQRW 521

Query: 64  VFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRSSQQW 106
           VF  + TI NP + LVM+V  S VS  KIILYP  G  +QQW
Sbjct: 522 VFNTNGTISNPNAKLVMDVAQSNVSLRKIILYPPTGNPNQQW 563

BLAST of CmoCh17G005510 vs. TrEMBL
Match: B7X8M2_MOMCH (rRNA N-glycosidase OS=Momordica charantia GN=MCL1 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.3e-23
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 1

Query: 2   DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQ 61
           DN+  VWLE CV+ K +QYWA+YSD +IRVN++RN CVS+++DS   LI I +C+GS  Q
Sbjct: 439 DNDTNVWLESCVKNKTKQYWALYSDDTIRVNNNRNLCVSSSTDSSSKLIVIRRCDGSINQ 498

Query: 62  RWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGR-SSQQWTLFY 110
           RWVF    TI NP    VM+V  + V   KI+L     + + QQWT+FY
Sbjct: 499 RWVFTPQGTISNPGYEAVMDVAQNDVYLKKIVLSSATDKGNGQQWTVFY 547

BLAST of CmoCh17G005510 vs. TrEMBL
Match: A0A0A0KN71_CUCSA (rRNA N-glycosidase OS=Cucumis sativus GN=Csa_5G428440 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.4e-22
Identity = 54/109 (49.54%), Postives = 68/109 (62.39%), Query Frame = 1

Query: 2   DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQ 61
           + N  +WLE+CV+ K EQ WAV+SDGSIRVN+  + C++A+S      I I KCNG + Q
Sbjct: 426 EENTNIWLEECVKNKIEQSWAVFSDGSIRVNNDHSLCMTASSIESKQRIVIAKCNGLASQ 485

Query: 62  RWVFMADATILNPK-SGLVMEVEGSQVSRNKIILYPIKGRSSQQWTLFY 110
           RWV  AD TI  PK  GLVM+V  S V   +I+LYP     SQ W   Y
Sbjct: 486 RWVLKADGTISTPKYEGLVMDVAQSNVDLKEIVLYPRSDLVSQHWVALY 534

BLAST of CmoCh17G005510 vs. TrEMBL
Match: B5WYH8_SAMEB (rRNA N-glycosylase (Fragment) OS=Sambucus ebulus GN=ar PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 9.7e-22
Identity = 53/102 (51.96%), Postives = 66/102 (64.71%), Query Frame = 1

Query: 4   NAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRW 63
           N  VW+E CV  + EQ WA+Y DG+IRVNS+R+ CV++    P  LI I KC GSS QRW
Sbjct: 431 NNFVWMEHCVLNRTEQEWALYGDGTIRVNSNRSLCVTSQYHEPSDLIIILKCQGSSNQRW 490

Query: 64  VFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRSSQQW 106
           VF  + TI NP +  VM+V  + VS  KIILY   G S+ QW
Sbjct: 491 VFNTNGTISNPNTTKVMDVAQANVSLRKIILYRPNGESNHQW 532

BLAST of CmoCh17G005510 vs. NCBI nr
Match: gi|778710161|ref|XP_011656527.1| (PREDICTED: nigrin b-like [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 3.9e-32
Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 1

Query: 2   DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQ 61
           +NN  +WLEKCV+ KAEQYWAVYSDGSIRVN  RN CVS++S+  G L+ I +C G+S Q
Sbjct: 433 NNNTNMWLEKCVKNKAEQYWAVYSDGSIRVNRKRNLCVSSSSNRSGALLIIDECKGTSNQ 492

Query: 62  RWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRSSQQWTLFY 110
           RW F+A+ TILNP++  V++V GS VS  +IILYP  G ++QQWTLFY
Sbjct: 493 RWNFLANGTILNPETKKVVDVYGSMVSAKRIILYPKTGLANQQWTLFY 540

BLAST of CmoCh17G005510 vs. NCBI nr
Match: gi|659090016|ref|XP_008445788.1| (PREDICTED: nigrin b-like [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 6.2e-30
Identity = 65/108 (60.19%), Postives = 80/108 (74.07%), Query Frame = 1

Query: 2   DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQ 61
           +NN  VWLEKCV+ KAEQYWAVY DGSIRVNS RN CVS++S+    LI I +CNG+S Q
Sbjct: 432 NNNTNVWLEKCVKNKAEQYWAVYGDGSIRVNSKRNLCVSSSSNRILALIIIEECNGTSNQ 491

Query: 62  RWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRSSQQWTLFY 110
           RW F+A+  ILNP++ +VM+V    VSR KIILY   G  +Q+W LFY
Sbjct: 492 RWNFLANGAILNPETKMVMDVYRFMVSRKKIILYRKTGERNQEWALFY 539

BLAST of CmoCh17G005510 vs. NCBI nr
Match: gi|659116528|ref|XP_008458115.1| (PREDICTED: nigrin b-like [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 3.5e-25
Identity = 58/110 (52.73%), Postives = 76/110 (69.09%), Query Frame = 1

Query: 2   DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASD--SPGGLITITKCNGSS 61
           +NN  + L+ C + K+EQYWA+Y DG+IRVNSSRN CVS  S   +PG +IT+  CNGSS
Sbjct: 429 NNNTNIELDDCAKNKSEQYWALYGDGTIRVNSSRNLCVSLTSSDCTPGRIITVLMCNGSS 488

Query: 62  KQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRSSQQWTLFY 110
            QRW F AD +I+NPK G+ ++V+        IILYP  G  +QQW+LFY
Sbjct: 489 SQRWNFQADGSIINPKCGMAIDVDTRWYD---IILYPKTGEYTQQWSLFY 535

BLAST of CmoCh17G005510 vs. NCBI nr
Match: gi|659126458|ref|XP_008463192.1| (PREDICTED: nigrin b-like [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 5.1e-24
Identity = 58/109 (53.21%), Postives = 71/109 (65.14%), Query Frame = 1

Query: 2   DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQ 61
           + N  +WLE+CV+ K EQ WAVYSDGSIRVN+  + CV+A+S  P   I I KCNG + Q
Sbjct: 426 EENTNIWLEECVKNKIEQSWAVYSDGSIRVNNDHSLCVTASSIEPKQRIVIGKCNGLASQ 485

Query: 62  RWVFMADATILNPKS-GLVMEVEGSQVSRNKIILYPIKGRSSQQWTLFY 110
           RWV  AD TI  PK+ GLVM+V  S V   +I+LYP     SQQW   Y
Sbjct: 486 RWVLNADGTISTPKNEGLVMDVAQSNVDLKEIVLYPRSDLVSQQWVALY 534

BLAST of CmoCh17G005510 vs. NCBI nr
Match: gi|2331046|gb|AAC49989.1| (type 2 ribosome-inactivating protein SNAIf precursor [Sambucus nigra])

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-23
Identity = 56/102 (54.90%), Postives = 67/102 (65.69%), Query Frame = 1

Query: 4   NAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRW 63
           N  VWLE CV  + EQ WA+Y DG+IRVNS+R+ CV++    P  LI I KC GS  QRW
Sbjct: 462 NNFVWLEDCVLNRVEQEWALYGDGTIRVNSNRSLCVTSEDHEPSDLIVILKCEGSGNQRW 521

Query: 64  VFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRSSQQW 106
           VF  + TI NP + LVM+V  S VS  KIILYP  G  +QQW
Sbjct: 522 VFNTNGTISNPNAKLVMDVAQSNVSLRKIILYPPTGNPNQQW 563

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SGSL_TRIAN7.4e-2348.65Seed lectin (Fragments) OS=Trichosanthes anguina PE=1 SV=2[more]
NIGB_SAMNI1.5e-2046.08Nigrin b OS=Sambucus nigra PE=1 SV=2[more]
RICI_RICCO4.5e-2046.15Ricin OS=Ricinus communis PE=1 SV=1[more]
AGGL_RICCO5.9e-2045.19Agglutinin OS=Ricinus communis PE=1 SV=1[more]
ML3_VISAL1.7e-1945.19Beta-galactoside-specific lectin 3 OS=Viscum album PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0K979_CUCSA2.7e-3261.11rRNA N-glycosidase OS=Cucumis sativus GN=Csa_6G040650 PE=3 SV=1[more]
O22415_SAMNI7.9e-2454.90rRNA N-glycosidase OS=Sambucus nigra GN=LECSNA-If PE=2 SV=1[more]
B7X8M2_MOMCH2.3e-2350.46rRNA N-glycosidase OS=Momordica charantia GN=MCL1 PE=2 SV=1[more]
A0A0A0KN71_CUCSA4.4e-2249.54rRNA N-glycosidase OS=Cucumis sativus GN=Csa_5G428440 PE=3 SV=1[more]
B5WYH8_SAMEB9.7e-2251.96rRNA N-glycosylase (Fragment) OS=Sambucus ebulus GN=ar PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778710161|ref|XP_011656527.1|3.9e-3261.11PREDICTED: nigrin b-like [Cucumis sativus][more]
gi|659090016|ref|XP_008445788.1|6.2e-3060.19PREDICTED: nigrin b-like [Cucumis melo][more]
gi|659116528|ref|XP_008458115.1|3.5e-2552.73PREDICTED: nigrin b-like [Cucumis melo][more]
gi|659126458|ref|XP_008463192.1|5.1e-2453.21PREDICTED: nigrin b-like [Cucumis melo][more]
gi|2331046|gb|AAC49989.1|1.1e-2354.90type 2 ribosome-inactivating protein SNAIf precursor [Sambucus nigra][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000772Ricin_B_lectin
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016798 hydrolase activity, acting on glycosyl bonds

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G005510.1CmoCh17G005510.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000772Ricin B, lectin domainPFAMPF00652Ricin_B_lectincoord: 4..105
score: 1.5
IPR000772Ricin B, lectin domainSMARTSM00458ricin_3coord: 1..108
score: 5.7
IPR000772Ricin B, lectin domainPROFILEPS50231RICIN_B_LECTINcoord: 1..108
score: 29
IPR000772Ricin B, lectin domainunknownSSF50370Ricin B-like lectinscoord: 2..107
score: 5.27
NoneNo IPR availableGENE3DG3DSA:2.80.10.50coord: 3..107
score: 5.0

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None