CmoCh17G005410 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G005410
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPectinesterase (3.1.1.11)
LocationCmo_Chr17 : 5352081 .. 5353256 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACGTCAAAGTCGACACCCAAAGCACAAGCCGACCGGCTTACGCTAATAGAGGAGGAAATGCTGTTCCTCAAAGAAGTCCCTGACACACTCCGGTTCCTGGAAAAGCGGGTGACCGAACTGAGTGAGAAAGTCGTAGAAGTCGACGCAATGGGCAACCGCCTGGATGGGTTGCCAATCGCAGAGCTGATGTTTCGAGTGACCTCACTCGAAGAAAGAGTTGCTCCTACGAGCAGCCCAAAACCGTCTGGTAGTCCGGATAGCTCTGTCGCGCACAAAGAGGGACGTGGCAAAGAGTTTGACGTACTACAAAATACAATGATGAGTTTGTTCAATGGATTAGCTGATGAATTCAGAACAACAATTGACAACCTCCAAGAAAGGATGGCCGCCATGAGCACGCGAATTGAAGTGACCATGAAAGCCGTGGAGGGCGTCACGGCTGGGCAAACTAATGCAGGATCCAACAAACTAAGGTTCCCAGACCCTAGAGCCTTCAAAGGGAATCGGGACGCCAAAGAGTTGGAAAACATCATCTTTGATGTCGAACAGTACTTCAAAGCCACGACGGCTTGTATCGACGACAAGAAGGTGACCGTAGCCGCGATGTATCTCATAGACGACGCCAAACTGTGGTGGCGTACGAAGGTGCAAGACATCGAGGATGGATTGTGCACCATCGACTCATGGGAGGACCTCAAGAGAGAGTTGAGGGAACAATTCCTCCCCAAAAACGCAGGACATATAGCAATGGAGAAAATAGTAGCCCTGAAACACACTGGAAACATACGGGACTACGTCAGACAGTTCTCAACCCTGATGCTAGATATCAGGGGCACAGCGGAGAAAGACAAGGTGTTCTTCTTTATAAATGGGCTACAACCATGGGCCAAAACAAAGATACATGAGAACAGGGTCCAAACCCTAGCTGCCGCAATGGCCTGCACCGAGAGACTCGTAGACTGTGGGAACGAAGCAGGATCCCAAAGAAGAATGACACCGGCCCCAAACAATGGGGGCAAAACATACAGGCCACCAGGTCATCGAAATGGAAGCCCCAACAGACCGAGCGGATGGACGGATAGACCTCCTCAGAACAATCAAGCGGGGACATCGAGGGTCTTACCATCAAAAGAACCACCCGACGACGCCTTTGCAATGCATACTGTGTAA

mRNA sequence

ATGTCGACGTCAAAGTCGACACCCAAAGCACAAGCCGACCGGCTTACGCTAATAGAGGAGGAAATGCTGTTCCTCAAAGAAGTCCCTGACACACTCCGGTTCCTGGAAAAGCGGGTGACCGAACTGAGTGAGAAAGTCGTAGAAGTCGACGCAATGGGCAACCGCCTGGATGGGTTGCCAATCGCAGAGCTGATGTTTCGAGTGACCTCACTCGAAGAAAGAGTTGCTCCTACGAGCAGCCCAAAACCGTCTGGTAGTCCGGATAGCTCTGTCGCGCACAAAGAGGGACGTGGCAAAGAGTTTGACGTACTACAAAATACAATGATGAGTTTGTTCAATGGATTAGCTGATGAATTCAGAACAACAATTGACAACCTCCAAGAAAGGATGGCCGCCATGAGCACGCGAATTGAAGTGACCATGAAAGCCGTGGAGGGCGTCACGGCTGGGCAAACTAATGCAGGATCCAACAAACTAAGGTTCCCAGACCCTAGAGCCTTCAAAGGGAATCGGGACGCCAAAGAGTTGGAAAACATCATCTTTGATGTCGAACAGTACTTCAAAGCCACGACGGCTTGTATCGACGACAAGAAGGTGACCGTAGCCGCGATGTATCTCATAGACGACGCCAAACTGTGGTGGCGTACGAAGGTGCAAGACATCGAGGATGGATTGTGCACCATCGACTCATGGGAGGACCTCAAGAGAGAGTTGAGGGAACAATTCCTCCCCAAAAACGCAGGACATATAGCAATGGAGAAAATAGTAGCCCTGAAACACACTGGAAACATACGGGACTACGTCAGACAGTTCTCAACCCTGATGCTAGATATCAGGGGCACAGCGGAGAAAGACAAGGTGTTCTTCTTTATAAATGGGCTACAACCATGGGCCAAAACAAAGATACATGAGAACAGGGTCCAAACCCTAGCTGCCGCAATGGCCTGCACCGAGAGACTCGTAGACTGTGGGAACGAAGCAGGATCCCAAAGAAGAATGACACCGGCCCCAAACAATGGGGGCAAAACATACAGGCCACCAGGTCATCGAAATGGAAGCCCCAACAGACCGAGCGGATGGACGGATAGACCTCCTCAGAACAATCAAGCGGGGACATCGAGGGTCTTACCATCAAAAGAACCACCCGACGACGCCTTTGCAATGCATACTGTGTAA

Coding sequence (CDS)

ATGTCGACGTCAAAGTCGACACCCAAAGCACAAGCCGACCGGCTTACGCTAATAGAGGAGGAAATGCTGTTCCTCAAAGAAGTCCCTGACACACTCCGGTTCCTGGAAAAGCGGGTGACCGAACTGAGTGAGAAAGTCGTAGAAGTCGACGCAATGGGCAACCGCCTGGATGGGTTGCCAATCGCAGAGCTGATGTTTCGAGTGACCTCACTCGAAGAAAGAGTTGCTCCTACGAGCAGCCCAAAACCGTCTGGTAGTCCGGATAGCTCTGTCGCGCACAAAGAGGGACGTGGCAAAGAGTTTGACGTACTACAAAATACAATGATGAGTTTGTTCAATGGATTAGCTGATGAATTCAGAACAACAATTGACAACCTCCAAGAAAGGATGGCCGCCATGAGCACGCGAATTGAAGTGACCATGAAAGCCGTGGAGGGCGTCACGGCTGGGCAAACTAATGCAGGATCCAACAAACTAAGGTTCCCAGACCCTAGAGCCTTCAAAGGGAATCGGGACGCCAAAGAGTTGGAAAACATCATCTTTGATGTCGAACAGTACTTCAAAGCCACGACGGCTTGTATCGACGACAAGAAGGTGACCGTAGCCGCGATGTATCTCATAGACGACGCCAAACTGTGGTGGCGTACGAAGGTGCAAGACATCGAGGATGGATTGTGCACCATCGACTCATGGGAGGACCTCAAGAGAGAGTTGAGGGAACAATTCCTCCCCAAAAACGCAGGACATATAGCAATGGAGAAAATAGTAGCCCTGAAACACACTGGAAACATACGGGACTACGTCAGACAGTTCTCAACCCTGATGCTAGATATCAGGGGCACAGCGGAGAAAGACAAGGTGTTCTTCTTTATAAATGGGCTACAACCATGGGCCAAAACAAAGATACATGAGAACAGGGTCCAAACCCTAGCTGCCGCAATGGCCTGCACCGAGAGACTCGTAGACTGTGGGAACGAAGCAGGATCCCAAAGAAGAATGACACCGGCCCCAAACAATGGGGGCAAAACATACAGGCCACCAGGTCATCGAAATGGAAGCCCCAACAGACCGAGCGGATGGACGGATAGACCTCCTCAGAACAATCAAGCGGGGACATCGAGGGTCTTACCATCAAAAGAACCACCCGACGACGCCTTTGCAATGCATACTGTGTAA
Homology
[Close]
BLAST of CmoCh17G005410 vs. TrEMBL
Match: A5BVZ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028502 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.5e-45
Identity = 102/226 (45.13%), Postives = 143/226 (63.27%), Query Frame = 1 

Query: 118 EFRTTIDNLQERMAAMSTRIEVTMKAVEGVTAGQTNAGSNKLRFPDPRAFKGNRDAKELE 177
           E +T ID  +  +      I V  KAV   +A    A S K+R P+P+ F GNR+AKELE
Sbjct: 39  EMQTRIDEFKVTLQTYGEDIAVLKKAVLQGSASGLEAPS-KVRVPEPKGFNGNRNAKELE 98

Query: 178 NIIFDVEQYFKATTACIDDKKVTVAAMYLIDDAKLWWRTKVQ-DIEDGLCTIDSWEDLKR 237
           N ++DVEQ+FKA     D +KV++ +MYL  DAKLWWRT+++ D E G   I +WE LK+
Sbjct: 99  NFLWDVEQFFKAAHV-PDGEKVSITSMYLTSDAKLWWRTRMEDDAESGRPQITTWETLKK 158

Query: 238 ELREQFLPKNAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDIRGTAEKDKVFFFINGLQP 297
           EL++QFLP N   +A E +  LKHTG++R+YV++FS+LMLDI+  +E+DK+F F++GLQ 
Sbjct: 159 ELKDQFLPTNTAWVAREALKRLKHTGSVREYVKEFSSLMLDIKNMSEEDKLFNFMSGLQG 218

Query: 298 WAKTKIHENRVQTLAAAMACTERLVDCGNEAGSQRRMTPAPNNGGK 343
           WA+T++    V+ L AAMA  + LVD            P    G K
Sbjct: 219 WAQTELRRQGVRDLPAAMAAADCLVDYKMGGAISTTQRPRSEGGNK 262

[Close]
BLAST of CmoCh17G005410 vs. TrEMBL
Match: A5AUJ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040632 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.2e-43
Identity = 118/311 (37.94%), Postives = 174/311 (55.95%), Query Frame = 1 

Query: 58  GLPIAELMFRVTSLEERVAPTSSPKPSGSPDSSVAHKEGRGKEFDVLQNTMMSLFNGLAD 117
           G  +  L  R+T LEE +     P+  G+  S   +  G   E  + +N + S  N + +
Sbjct: 4   GSAMEALRERMTQLEEALGEW--PRDDGTVASWAENTMG---EIQLQRNMLESHDNFVEE 63

Query: 118 ---EFRTT----IDNLQERMAAMSTRIEVTMKAVEGVTAGQTNAGSNKLRFPDPRAFKGN 177
              EF+T     ID  +  +      I V  KAV   +A    A S K+R P+P+ F GN
Sbjct: 64  KMAEFKTEMQSRIDEFKXTLQTYGEDIAVLKKAVLQGSASGPEAPS-KVRVPEPKGFNGN 123

Query: 178 RDAKELENIIFDVEQYFKATTACIDDKKVTVAAMYLIDDAKLWWRTKVQ-DIEDGLCTID 237
            +AK LEN ++D+EQ+FKA     D +KV++ +MYL  DAKLWWRT+++ D E G   I 
Sbjct: 124 XNAKXLENFLWDIEQFFKAAHV-PDGEKVSITSMYLTGDAKLWWRTRMEDDAESGRPQIT 183

Query: 238 SWEDLKRELREQFLPKNAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDIRGTAEKDKVFF 297
           +WE LK+EL++QFLP N   +A E +  L+HTG++R+YV++FS+LMLDI+  +E+DK+F 
Sbjct: 184 TWETLKKELKDQFLPTNTAWVAREALKRLRHTGSVREYVKEFSSLMLDIKNMSEEDKLFN 243

Query: 298 FINGLQPWAKTKIHENRVQTLAAAMACTERLVDCGNEAGSQRRMTPAPNNGGKTYRPPGH 357
           F++GLQ WA+T++    V+ L AAM   + LVD      S     P    G K       
Sbjct: 244 FMSGLQGWAQTELRRQGVRDLPAAMXAADCLVDXKMGGASSTTQRPKSEGGKK-----AK 302

Query: 358 RNGSPNRPSGW 361
             G  ++ SGW
Sbjct: 304 FEGKTSQKSGW 302

[Close]
BLAST of CmoCh17G005410 vs. TrEMBL
Match: A5AXU3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031913 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.2e-43
Identity = 118/311 (37.94%), Postives = 176/311 (56.59%), Query Frame = 1 

Query: 58  GLPIAELMFRVTSLEERVAPTSSPKPSGSPDSSVAHKEGRGKEFDVLQNTMMSLFNGLAD 117
           G  +  L  R+T LEE +     P+  G+  S   +  G   E  + +N + S  N + +
Sbjct: 4   GSAMEALRERMTQLEEALGEW--PRDDGTVXSWAENTMG---EIQLQRNMLESHDNFVEE 63

Query: 118 ---EFRTT----IDNLQERMAAMSTRIEVTMKAVEGVTAGQTNAGSNKLRFPDPRAFKGN 177
              EF+T     ID  +  +      I V  KAV   +A    A S K+R  +P+ F GN
Sbjct: 64  KMAEFKTEMQSRIDEFKVTLQTYGEDIAVLKKAVLQGSASGPEAPS-KVRVXEPKGFNGN 123

Query: 178 RDAKELENIIFDVEQYFKATTACIDDKKVTVAAMYLIDDAKLWWRTKVQ-DIEDGLCTID 237
           R+AKELEN ++D+EQ+FKA     D +KV++ +MYL  DAKLWWRT+++ D E G   I 
Sbjct: 124 RNAKELENFLWDIEQFFKAAHV-PDGEKVSITSMYLTGDAKLWWRTRMEDDAEFGRPQIT 183

Query: 238 SWEDLKRELREQFLPKNAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDIRGTAEKDKVFF 297
           +WE LK+EL++QFLP N   +A E +  L+HTG++R+YV++FS+LMLDI+  +E+DK+F 
Sbjct: 184 TWETLKKELKDQFLPTNTAWVAREALKRLRHTGSVREYVKEFSSLMLDIKNMSEEDKLFN 243

Query: 298 FINGLQPWAKTKIHENRVQTLAAAMACTERLVDCGNEAGSQRRMTPAPNNGGKTYRPPGH 357
           F++GLQ WA+T++    V+ L AAM+  + L+D      S     P    G K       
Sbjct: 244 FMSGLQGWAQTELRRQGVRDLPAAMSAADCLMDYKMGGASSTTQRPKSEGGKK-----AK 302

Query: 358 RNGSPNRPSGW 361
             G  ++ SGW
Sbjct: 304 FEGKTSQKSGW 302

[Close]
BLAST of CmoCh17G005410 vs. TrEMBL
Match: A5BDH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.8e-41
Identity = 100/253 (39.53%), Postives = 146/253 (57.71%), Query Frame = 1 

Query: 112 FNGLADEFRTTIDNLQERMAAMSTRIEVTMKAVEGVTAGQTNAGSNKLRFPDPRAFKGNR 171
           F    D+  T   +++ RM A++ R++   + +    A    A   ++  P P  F G R
Sbjct: 111 FMSFQDKVMTMFASVESRMKALAARMDARDQEIRQELAIYKIAAP-RVEVPKPHTFSGKR 170

Query: 172 DAKELENIIFDVEQYFKATTACIDDKKVTVAAMYLIDDAKLWWRTKVQDIEDGLCTIDSW 231
           DAKEL+N ++ +E+YF+A     +  KV +A +YL D+A LWWR    DIE G CTID+W
Sbjct: 171 DAKELDNFLWHMERYFEAIALMDEATKVRIATLYLTDNATLWWRRWFADIERGTCTIDTW 230

Query: 232 EDLKRELREQFLPKNAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDIRGTAEKDKVFFFI 291
           +  KRE++ QF P++  ++A + +  LKHTG+IRDYV++FSTLML+I   AE++ +F FI
Sbjct: 231 DAFKREIKRQFYPEDVAYLARKSLKRLKHTGSIRDYVKEFSTLMLEIPNMAEEELLFNFI 290

Query: 292 NGLQPWAKTKIHENRVQTLAAAMACTERLVDCGNEAGSQRRMTPAPNN---GGKTYRPPG 351
           + LQ WA+ ++    VQ LA AMA  E LVD      S +   P+  N   G    R  G
Sbjct: 291 DNLQSWAEKELRRYGVQDLATAMAVAESLVDY-RRGDSSKPKPPSKGNQVKGRGDKRLQG 350

Query: 352 H--RNGSPNRPSG 360
           H  + GS   PSG
Sbjct: 351 HTSKEGSSKGPSG 361

[Close]
BLAST of CmoCh17G005410 vs. TrEMBL
Match: A5BX03_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.0e-40
Identity = 100/262 (38.17%), Postives = 149/262 (56.87%), Query Frame = 1 

Query: 112 FNGLADEFRTTIDNLQERMAAMSTRIEVTMKAVEGVTAGQTNAGSNKL---------RFP 171
           F    D+  T   +++ RM A++ R++V  + +    A    A S ++           P
Sbjct: 96  FMSFQDKVMTMFASVESRMEALAARMDVRDQEIRQELAIYKTAVSARVMATHEAPRVEVP 155

Query: 172 DPRAFKGNRDAKELENIIFDVEQYFKATTACIDDKKVTVAAMYLIDDAKLWWRTKVQDIE 231
               F G RDAKEL+N ++ +E+YF+A     +  KV  A +YL D+A LWWR +  DIE
Sbjct: 156 KLHTFSGKRDAKELDNFLWHMERYFEAIALTDEATKVRTATLYLTDNATLWWRRRFADIE 215

Query: 232 DGLCTIDSWEDLKRELREQFLPKNAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDIRGTA 291
            G CTID+W+  KRE++ QF P++  ++A + +  LKHTG+IR+YV++FSTLML+I   A
Sbjct: 216 RGTCTIDTWDAFKREIKRQFYPEDVAYLARKNLKRLKHTGSIREYVKEFSTLMLEIPNMA 275

Query: 292 EKDKVFFFINGLQPWAKTKIHENRVQTLAAAMACTERLVDCGNEAGSQRRMTPAPNN--- 351
           E++ +F F++ LQ WA+ ++    VQ LA AMA  E LVD   +  S +   P+  N   
Sbjct: 276 EEELLFNFMDNLQSWAEQELRRRGVQDLATAMAVAESLVDY-RKGDSSKPKPPSKGNQAK 335

Query: 352 GGKTYRPPGH--RNGSPNRPSG 360
           GG   R  GH  + GS   PSG
Sbjct: 336 GGGDKRSQGHTPKEGSSKGPSG 356

[Close]
BLAST of CmoCh17G005410 vs. NCBI nr
Match: gi|1009175511|ref|XP_015868924.1| (PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba])

HSP 1 Score: 245.0 bits (624), Expect = 2.2e-61
Identity = 130/320 (40.62%), Postives = 197/320 (61.56%), Query Frame = 1 

Query: 63  ELMFRVTSLEERVAPTSSPKPSGSPDSSVAHKEGRGKEFDVLQNTMMSLFNGLADEFRTT 122
           ++  RV++LE       +  PS S   +   ++G  +E       +MS  N L ++FR T
Sbjct: 227 DIASRVSALERNQTTWGNAGPSSS---TAGERDGAMEE---AIERLMSTVNELTEDFRAT 286

Query: 123 IDNLQERMAAMSTRIEVTMKAVEGVTAGQTNAGSNKLRFPDPRAFKGNRDAKELENIIFD 182
           ++ L+  M  ++T++ +TM+AVE   A        +++ P+PRA+ G RDAKELEN +FD
Sbjct: 287 VEALKIEMGQINTKLAITMRAVENRPAVPVGGDYGRMKVPEPRAYGGARDAKELENFLFD 346

Query: 183 VEQYFKATTACIDDKKVTVAAMYLIDDAKLWWRTKVQDIEDGLCTIDSWEDLKRELREQF 242
           +EQYF+A     ++ KVT+A MYL +DAKLWWR+K +DI++  C ID+W+ L++EL+ QF
Sbjct: 347 MEQYFRAIKPDSEETKVTMATMYLTNDAKLWWRSKYEDIKNNRCIIDTWDQLQKELKNQF 406

Query: 243 LPKNAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDIRGTAEKDKVFFFINGLQPWAKTKI 302
           LP+N  +IA   +  L+ TGN+RDYV+ FS LMLDIR  +EKDK+F+F+ GL+PWA+T++
Sbjct: 407 LPENVDYIARRHLRELRQTGNVRDYVKAFSALMLDIRDMSEKDKLFYFLEGLKPWARTEL 466

Query: 303 HENRVQTLAAAMACTERLVDCGNEAGSQRRMTPAPN--NGGKTYRP---PGHRNGSPNRP 362
              RVQ LA+A+   ERL+D   E+   RR  P+P+  N  + +RP   P        +P
Sbjct: 467 QRQRVQDLASALGAAERLMDYSTESPINRRPQPSPSNANSSRPFRPANLPRPGGSDSRKP 526

Query: 363 SGWTDRPPQNNQAGTSRVLP 378
               + PP+N  A   R  P
Sbjct: 527 PNTREPPPRNPNAFGFRPRP 540

[Close]
BLAST of CmoCh17G005410 vs. NCBI nr
Match: gi|1009165187|ref|XP_015900908.1| (PREDICTED: uncharacterized protein LOC107434012 [Ziziphus jujuba])

HSP 1 Score: 243.8 bits (621), Expect = 4.9e-61
Identity = 133/320 (41.56%), Postives = 197/320 (61.56%), Query Frame = 1 

Query: 63  ELMFRVTSLEERVAPTSSPKPSGSPDSSVAHKEGRGKEFDVLQNTMMSLFNGLADEFRTT 122
           ++  RV++LE       +  PS S   +   ++G  +E       +MS  N L ++FR T
Sbjct: 45  DIASRVSALERNQTTWGNAGPSSS---TTGERDGAMEE---AIERLMSTVNELTEDFRAT 104

Query: 123 IDNLQERMAAMSTRIEVTMKAVEGVTAGQTNAGSNKLRFPDPRAFKGNRDAKELENIIFD 182
           ++ L+  M  ++T++ +TM+AVE   A        +++ P+PRA+ G RDAKELEN +FD
Sbjct: 105 VEALKIEMGQINTKLAITMRAVENRPAVPVGGDYGRMKVPEPRAYGGARDAKELENFLFD 164

Query: 183 VEQYFKATTACIDDKKVTVAAMYLIDDAKLWWRTKVQDIEDGLCTIDSWEDLKRELREQF 242
           +EQYF+A     ++ KVT+A MYL +DAKLWWR+K +DI++  C ID+W+ L++EL+ Q 
Sbjct: 165 MEQYFRAIKPDSEETKVTMATMYLTNDAKLWWRSKYEDIKNNRCIIDTWDQLQKELKNQS 224

Query: 243 LPKNAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDIRGTAEKDKVFFFINGLQPWAKTKI 302
           LPKN  +IA   +  L+ TGN+RDYV+ FS LMLDIR  +EKDK+F+F+ GL+PWA+T++
Sbjct: 225 LPKNVDYIARRHLRELRQTGNVRDYVKAFSALMLDIRDMSEKDKLFYFLEGLKPWARTEL 284

Query: 303 HENRVQTLAAAMACTERLVDCGNEAGSQRRMTPAPN--NGGKTYRPPG--HRNGSPNR-P 362
              RVQ LA+A+   ERL+D   E+   RR  P+P+  N  + +RP       GS NR P
Sbjct: 285 QRQRVQDLASALGAAERLMDYSTESPINRRPQPSPSNANSSRPFRPANLPRLGGSDNRKP 344

Query: 363 SGWTDRPPQNNQAGTSRVLP 378
               + PP N  A   R  P
Sbjct: 345 PNTREPPPWNPNAFGFRPRP 358

[Close]
BLAST of CmoCh17G005410 vs. NCBI nr
Match: gi|1009161113|ref|XP_015898721.1| (PREDICTED: uncharacterized protein LOC107432159 [Ziziphus jujuba])

HSP 1 Score: 237.7 bits (605), Expect = 3.5e-59
Identity = 125/297 (42.09%), Postives = 188/297 (63.30%), Query Frame = 1 

Query: 63  ELMFRVTSLEERVAPTSSPKPSGSPDSSVAHKEGRGKEFDVLQNTMMSLFNGLADEFRTT 122
           ++  RV++LE       +  PS S   +   ++G  +E       +MS  N L +EF+ T
Sbjct: 38  DIASRVSALERNQTTWGNTGPSSS---TAGERDGAMEE---AIERLMSTVNELTEEFQAT 97

Query: 123 IDNLQERMAAMSTRIEVTMKAVEGVTAGQTNAGSNKLRFPDPRAFKGNRDAKELENIIFD 182
           ++ L+  M  ++T++ +TM+AVE   A        +++ P+PRA+ G RDAKELEN +FD
Sbjct: 98  VEALKIEMGQINTKLAITMRAVENRPAVPMGGDYGRMKVPEPRAYGGARDAKELENFLFD 157

Query: 183 VEQYFKATTACIDDKKVTVAAMYLIDDAKLWWRTKVQDIEDGLCTIDSWEDLKRELREQF 242
           +EQYF+A     ++ KVT+A MYL +DAKLWWR+K +DI +  C ID+W+ L++EL+ QF
Sbjct: 158 MEQYFRAIKPDSEETKVTMATMYLTNDAKLWWRSKYEDIMNNRCIIDTWDQLQKELKNQF 217

Query: 243 LPKNAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDIRGTAEKDKVFFFINGLQPWAKTKI 302
           LP+N  +IA   +  L+ T N+RDYV+ FS LMLDIR  +EKDK+F+F+ GL+PWA+T++
Sbjct: 218 LPENVDYIARRHLRELRQTSNVRDYVKAFSALMLDIRDMSEKDKLFYFLEGLKPWARTEL 277

Query: 303 HENRVQTLAAAMACTERLVDCGNEAGSQRRMTPAPNNGGKTYRPPGHRNGSPNRPSG 360
              RVQ LA+A+   ERL+D   E+   RR  P+P+N   + RP   R  +  RP G
Sbjct: 278 QRQRVQDLASALGAAERLMDYSTESPINRRPQPSPSNANSS-RP--FRPANLPRPGG 325

[Close]
BLAST of CmoCh17G005410 vs. NCBI nr
Match: gi|1009181571|ref|XP_015872243.1| (PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba])

HSP 1 Score: 228.0 bits (580), Expect = 2.8e-56
Identity = 116/253 (45.85%), Postives = 167/253 (66.01%), Query Frame = 1 

Query: 130 MAAMSTRIEVTMKAVEGVTAGQTNAGSNKLRFPDPRAFKGNRDAKELENIIFDVEQYFKA 189
           M  ++T++ +TM+AVE   A        +++ P+PRA+ G RDAKELEN +FD+EQYF+A
Sbjct: 1   MGQINTKLAITMRAVENRPAVPMGGDYGRMKVPEPRAYGGARDAKELENFLFDMEQYFRA 60

Query: 190 TTACIDDKKVTVAAMYLIDDAKLWWRTKVQDIEDGLCTIDSWEDLKRELREQFLPKNAGH 249
                ++ KVT+A MYL +DAKLWWR+K +DI++  C ID+W+ L++EL+ QFLP+N  +
Sbjct: 61  IKPDSEETKVTMATMYLTNDAKLWWRSKYEDIKNNRCIIDTWDQLQKELKNQFLPENVDY 120

Query: 250 IAMEKIVALKHTGNIRDYVRQFSTLMLDIRGTAEKDKVFFFINGLQPWAKTKIHENRVQT 309
           IA   +  L+ TGN+RDYV+ FS LMLDIR  +EKDK+F+F+ GL+PWA+T++   RVQ 
Sbjct: 121 IARRHLRELRQTGNVRDYVKAFSALMLDIRDMSEKDKLFYFLEGLKPWARTELQRQRVQD 180

Query: 310 LAAAMACTERLVDCGNEAGSQRRMTPAPN--NGGKTYRPPG--HRNGSPNR-PSGWTDRP 369
           LA+A+   ERL+D   E+   RR  P+P+  N  + +RP       GS NR P    + P
Sbjct: 181 LASALGAAERLMDYSTESPINRRPQPSPSNANSSRPFRPANLPRPGGSDNRKPPNTREPP 240

Query: 370 PQNNQAGTSRVLP 378
           P+N  A   R  P
Sbjct: 241 PRNPNAFGFRPRP 253

[Close]
BLAST of CmoCh17G005410 vs. NCBI nr
Match: gi|1009180596|ref|XP_015871709.1| (PREDICTED: uncharacterized protein LOC107408804 [Ziziphus jujuba])

HSP 1 Score: 219.9 bits (559), Expect = 7.6e-54
Identity = 108/230 (46.96%), Postives = 156/230 (67.83%), Query Frame = 1 

Query: 130 MAAMSTRIEVTMKAVEGVTAGQTNAGSNKLRFPDPRAFKGNRDAKELENIIFDVEQYFKA 189
           M  ++T++ +TM+AVE   A        +++ P+PRA+ G RDAKELEN +FD+EQYF+A
Sbjct: 1   MGQINTKLAITMRAVENRPAVPMGGDYGRMKVPEPRAYGGARDAKELENFLFDMEQYFRA 60

Query: 190 TTACIDDKKVTVAAMYLIDDAKLWWRTKVQDIEDGLCTIDSWEDLKRELREQFLPKNAGH 249
                ++ KVT+A MYL +DAKLWWR+K +DI +  C ID+W+ L++EL+ QFLP+N  +
Sbjct: 61  IKPDSEETKVTMATMYLTNDAKLWWRSKYEDIMNNRCIIDTWDQLQKELKNQFLPENVDY 120

Query: 250 IAMEKIVALKHTGNIRDYVRQFSTLMLDIRGTAEKDKVFFFINGLQPWAKTKIHENRVQT 309
           IA   +  L+ T N+RDYV+ FS LMLDIR  +EKDK+F+F+ GL+PWA+T++   RVQ 
Sbjct: 121 IARRHLRELRQTSNVRDYVKAFSALMLDIRDMSEKDKLFYFLEGLKPWARTELQRQRVQD 180

Query: 310 LAAAMACTERLVDCGNEAGSQRRMTPAPNNGGKTYRPPGHRNGSPNRPSG 360
           LA+A+   ERL+D   E+   RR  P+P+N   + RP   R  +  RP G
Sbjct: 181 LASALGAAERLMDYSTESPINRRPQPSPSNANSS-RP--FRPANLPRPGG 227

The following BLAST results are available for this feature:
BLAST of CmoCh17G005410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh17G005410 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BVZ5_VITVI3.5e-4545.13Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028502 PE=4 SV=1[more]
A5AUJ7_VITVI3.2e-4337.94Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040632 PE=4 SV=1[more]
A5AXU3_VITVI4.2e-4337.94Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031913 PE=4 SV=1[more]
A5BDH9_VITVI8.8e-4139.53Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1[more]
A5BX03_VITVI2.0e-4038.17Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1[more]
BLAST of CmoCh17G005410 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh17G005410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1009175511|ref|XP_015868924.1|2.2e-6140.63PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba][more]
gi|1009165187|ref|XP_015900908.1|4.9e-6141.56PREDICTED: uncharacterized protein LOC107434012 [Ziziphus jujuba][more]
gi|1009161113|ref|XP_015898721.1|3.5e-5942.09PREDICTED: uncharacterized protein LOC107432159 [Ziziphus jujuba][more]
gi|1009181571|ref|XP_015872243.1|2.8e-5645.85PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba][more]
gi|1009180596|ref|XP_015871709.1|7.6e-5446.96PREDICTED: uncharacterized protein LOC107408804 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G005410.1CmoCh17G005410.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 201..295
score: 5.0
NoneNo IPR availableunknownCoilCoilcoord: 116..143
score: -coord: 32..52
scor

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G005410Watermelon (97103) v2cmowmbB368
CmoCh17G005410Cucurbita moschata (Rifu)cmocmoB318
CmoCh17G005410Cucurbita moschata (Rifu)cmocmoB323
CmoCh17G005410Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G005410Cucurbita maxima (Rimu)cmacmoB895
CmoCh17G005410Cucurbita maxima (Rimu)cmacmoB900
CmoCh17G005410Watermelon (97103) v1cmowmB346
CmoCh17G005410Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G005410Cucurbita pepo (Zucchini)cmocpeB349
CmoCh17G005410Cucurbita pepo (Zucchini)cmocpeB354
CmoCh17G005410Silver-seed gourdcarcmoB0116
CmoCh17G005410Silver-seed gourdcarcmoB0117
CmoCh17G005410Silver-seed gourdcarcmoB1295