CmoCh17G005270 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G005270
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRNA-binding protein 38
LocationCmo_Chr17 : 5161082 .. 5161652 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATTGTTATAACGTCCAATTTGTCTGTATAAATACATTCCATCTCACACAGAACAAACACAAAGGGGCGTAGATTTCTCTTCGTTTACTTTGGTGCTTATTGGGAAGGGCATATTTGTGTGCCTTATGTCTCAACAACACTGGCAATTTCTTAACAATGGCGGCGGCGGCGGCCTTTGGGGCCAATATAATGACACCACTTTCACCAAAATCTTCGTTGGAGGGTTGGCTTGGGACACTCAGAGACATACCTTGAAAAGGTATTTTGAACAATTTGGTGAAATTTTGGAAGCTGTTATTATTACTGATAAAACCACCGGCAGATCCAAGGGTTATGGCTTTGTAAGTCCCCCTTCCCCATTCCCCCTTCTTGTTCTTGTAATAATGCAGATTTGATTTGATTTGATTTGGTTTGATTTGATTTCATTGATTTCATTGATTTTGTTTTTAGGTCACATTTAAGGATCCTGATTCTGCCATTAGAGCTTCTCAAAACCCTTCCCCTGTTATCGATGGTAGAACGGCTAATTGCAATCTCGCTTCTCAACATGGTTCGTTCTCATTTCTTTGA

mRNA sequence

AGATTGTTATAACGTCCAATTTGTCTGTATAAATACATTCCATCTCACACAGAACAAACACAAAGGGGCGTAGATTTCTCTTCGTTTACTTTGGTGCTTATTGGGAAGGGCATATTTGTGTGCCTTATGTCTCAACAACACTGGCAATTTCTTAACAATGGCGGCGGCGGCGGCCTTTGGGGCCAATATAATGACACCACTTTCACCAAAATCTTCGTTGGAGGGTTGGCTTGGGACACTCAGAGACATACCTTGAAAAGGTATTTTGAACAATTTGGTGAAATTTTGGAAGCTGTTATTATTACTGATAAAACCACCGGCAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCTGATTCTGCCATTAGAGCTTCTCAAAACCCTTCCCCTGTTATCGATGGTAGAACGGCTAATTGCAATCTCGCTTCTCAACATGGTTCGTTCTCATTTCTTTGA

Coding sequence (CDS)

ATGTCTCAACAACACTGGCAATTTCTTAACAATGGCGGCGGCGGCGGCCTTTGGGGCCAATATAATGACACCACTTTCACCAAAATCTTCGTTGGAGGGTTGGCTTGGGACACTCAGAGACATACCTTGAAAAGGTATTTTGAACAATTTGGTGAAATTTTGGAAGCTGTTATTATTACTGATAAAACCACCGGCAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCTGATTCTGCCATTAGAGCTTCTCAAAACCCTTCCCCTGTTATCGATGGTAGAACGGCTAATTGCAATCTCGCTTCTCAACATGGTTCGTTCTCATTTCTTTGA
Homology
[Close]
BLAST of CmoCh17G005270 vs. Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.2e-25
Identity = 53/88 (60.23%), Postives = 68/88 (77.27%), Query Frame = 1 

Query: 19  GQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVTFKDP 78
           G + DT  TK+FVGGLAWDT +  +  +F ++G+ILEAVII+DK T RSKGYGFVTFKD 
Sbjct: 9   GCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDA 68

Query: 79  DSAIRASQNPSPVIDGRTANCNLASQHG 107
            +A RA ++ +P+I+GR ANCNLAS  G
Sbjct: 69  KAATRACEDSTPIINGRRANCNLASLGG 96

[Close]
BLAST of CmoCh17G005270 vs. Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-23
Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = 1 

Query: 15  GGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVT 74
           G + G   DTTFTKIFVGGL + T   +L++YFE FG+I EAV+ITD+ TG+S+GYGFVT
Sbjct: 22  GAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVT 81

Query: 75  FKDPDSAIRASQNPSPVIDGRTANCNLA 103
             D  +A RA ++P+P+IDGR AN NLA
Sbjct: 82  MADRAAAERACKDPNPIIDGRKANVNLA 109

[Close]
BLAST of CmoCh17G005270 vs. Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 5.8e-23
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 1 

Query: 19  GQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVTFKDP 78
           G   DTTFTKIFVGGL + T   +L++YFE FG+I EAV+ITD+ TG+S+GYGFVT  D 
Sbjct: 24  GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 83

Query: 79  DSAIRASQNPSPVIDGRTANCNLA 103
            +A RA ++P+P+IDGR AN NLA
Sbjct: 84  AAADRACKDPNPIIDGRKANVNLA 107

[Close]
BLAST of CmoCh17G005270 vs. Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.8e-23
Identity = 50/80 (62.50%), Postives = 64/80 (80.00%), Query Frame = 1 

Query: 23  DTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVTFKDPDSAI 82
           DTT+TKIFVGGL + T   +L++YFE FGEI EAV+ITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 83  RASQNPSPVIDGRTANCNLA 103
           RA ++P+P+IDGR AN NLA
Sbjct: 67  RACKDPNPIIDGRKANVNLA 86

[Close]
BLAST of CmoCh17G005270 vs. Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.8e-23
Identity = 50/80 (62.50%), Postives = 64/80 (80.00%), Query Frame = 1 

Query: 23  DTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVTFKDPDSAI 82
           DTTFTKIFVGGL + T   +L++YFE FG+I EAV+ITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 83  RASQNPSPVIDGRTANCNLA 103
           RA ++P+P+IDGR AN NLA
Sbjct: 67  RACKDPNPIIDGRKANVNLA 86

[Close]
BLAST of CmoCh17G005270 vs. TrEMBL
Match: A0A0A0K998_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087740 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.3e-39
Identity = 80/94 (85.11%), Postives = 85/94 (90.43%), Query Frame = 1 

Query: 10  NNGGGGGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKG 69
           NN     L GQYNDTTFTKIFVGGLAW+TQRHT++RYFEQFGEILEAV+ITDK TGRSKG
Sbjct: 14  NNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKG 73

Query: 70  YGFVTFKDPDSAIRASQNPSPVIDGRTANCNLAS 104
           YGFVTFKDPD+AIRA QNPSPVIDGR ANCNLAS
Sbjct: 74  YGFVTFKDPDAAIRACQNPSPVIDGRRANCNLAS 107

[Close]
BLAST of CmoCh17G005270 vs. TrEMBL
Match: B9GRQ8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s17990g PE=4 SV=2)

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-38
Identity = 83/103 (80.58%), Postives = 90/103 (87.38%), Query Frame = 1 

Query: 1   MSQQHWQFLNNGGGGGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIIT 60
           M+QQ  QF   GGG    GQYNDTTFTKIFVGGLAW+TQR T++RYFEQFGEILEAV+IT
Sbjct: 1   MAQQR-QFQMAGGGNS--GQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVIT 60

Query: 61  DKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLAS 104
           DK TGRSKGYGFVTFKDPD+A+RA QNPSPVIDGR ANCNLAS
Sbjct: 61  DKNTGRSKGYGFVTFKDPDAAMRACQNPSPVIDGRRANCNLAS 100

[Close]
BLAST of CmoCh17G005270 vs. TrEMBL
Match: A0A067K9C7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14190 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.4e-38
Identity = 78/90 (86.67%), Postives = 83/90 (92.22%), Query Frame = 1 

Query: 14  GGGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFV 73
           GG   GQYNDTTFTKIFVGGLAW+TQR T++RYFEQFGEILEAV+ITDK TGRSKGYGFV
Sbjct: 17  GGSNLGQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 76

Query: 74  TFKDPDSAIRASQNPSPVIDGRTANCNLAS 104
           TFKDPDSA+RA QNPSPVIDGR ANCNLAS
Sbjct: 77  TFKDPDSAMRACQNPSPVIDGRRANCNLAS 106

[Close]
BLAST of CmoCh17G005270 vs. TrEMBL
Match: B9RNJ8_RICCO (RNA-binding region-containing protein, putative OS=Ricinus communis GN=RCOM_1339600 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 5.8e-38
Identity = 83/103 (80.58%), Postives = 89/103 (86.41%), Query Frame = 1 

Query: 1   MSQQHWQFLNNGGGGGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIIT 60
           MSQQ  QF   GG     GQYNDTTFTKIFVGGLAW+TQR T++RYFEQFGEILEAV+IT
Sbjct: 1   MSQQR-QFQMMGGSN--LGQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVIT 60

Query: 61  DKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLAS 104
           DK TGRSKGYGFVTFKDP++AIRA QNPSPVIDGR ANCNLAS
Sbjct: 61  DKNTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNLAS 100

[Close]
BLAST of CmoCh17G005270 vs. TrEMBL
Match: W9S430_9ROSA (RNA-binding protein 38 OS=Morus notabilis GN=L484_019636 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 9.8e-38
Identity = 80/103 (77.67%), Postives = 86/103 (83.50%), Query Frame = 1 

Query: 19  GQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVTFKDP 78
           GQYNDTTFTKIFVGGLAW+TQR T++RYFEQFGEILEAV+ITDK TGRSKGYGFVTFKDP
Sbjct: 16  GQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP 75

Query: 79  DSAIRASQNPSPVIDGRTANCNLAS-----------QHGSFSF 111
           D+A+RA QNPSPVIDGR ANCNLAS           QHGS  F
Sbjct: 76  DAAMRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHGSGRF 118

[Close]
BLAST of CmoCh17G005270 vs. TAIR10
Match: AT1G20880.1 (AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 137.9 bits (346), Expect = 3.8e-33
Identity = 60/83 (72.29%), Postives = 75/83 (90.36%), Query Frame = 1 

Query: 21  YNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVTFKDPDS 80
           + DTTFTK+FVGGLAW+TQ  TL+R+F+Q+G+ILEAV+ITDK TGRSKGYGFVTF+DP++
Sbjct: 18  FGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77

Query: 81  AIRASQNPSPVIDGRTANCNLAS 104
           A RA  +P+P+IDGR ANCNLAS
Sbjct: 78  ARRACVDPTPIIDGRRANCNLAS 100

[Close]
BLAST of CmoCh17G005270 vs. TAIR10
Match: AT2G46780.1 (AT2G46780.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 137.5 bits (345), Expect = 5.0e-33
Identity = 69/102 (67.65%), Postives = 80/102 (78.43%), Query Frame = 1 

Query: 1   MSQQHWQFLNNGGGGGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIIT 60
           M+QQ  QF   GG         DT  TKIFVGGLAW+TQR T++RYFEQFGEI+EAV+IT
Sbjct: 1   MAQQR-QFQMEGGNNNT----TDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVIT 60

Query: 61  DKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLA 103
           DK TGRSKGYGFVTFK+ ++A+RA QN +PVIDGR ANCNLA
Sbjct: 61  DKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNLA 97

[Close]
BLAST of CmoCh17G005270 vs. TAIR10
Match: AT1G76460.1 (AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 137.1 bits (344), Expect = 6.5e-33
Identity = 60/83 (72.29%), Postives = 74/83 (89.16%), Query Frame = 1 

Query: 21  YNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVTFKDPDS 80
           + DTTFTK+FVGGLAW+TQ  TL+++FEQ+GEILEAV+I DK TGRSKGYGFVTF+DP++
Sbjct: 18  FGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEA 77

Query: 81  AIRASQNPSPVIDGRTANCNLAS 104
           A RA  +P+P+IDGR ANCNLAS
Sbjct: 78  ARRACADPTPIIDGRRANCNLAS 100

[Close]
BLAST of CmoCh17G005270 vs. TAIR10
Match: AT1G78260.1 (AT1G78260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 134.0 bits (336), Expect = 5.5e-32
Identity = 60/83 (72.29%), Postives = 72/83 (86.75%), Query Frame = 1 

Query: 21  YNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVTFKDPDS 80
           + DTT+TK+FVGGLAW+T    ++RYFEQFGEILEAVIITDK TG+SKGYGFVTF++ DS
Sbjct: 11  FGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDS 70

Query: 81  AIRASQNPSPVIDGRTANCNLAS 104
           A RA  +P+PVIDGR ANCN+AS
Sbjct: 71  ATRAVADPNPVIDGRKANCNIAS 93

[Close]
BLAST of CmoCh17G005270 vs. TAIR10
Match: AT1G22330.1 (AT1G22330.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-31
Identity = 60/83 (72.29%), Postives = 71/83 (85.54%), Query Frame = 1 

Query: 21  YNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVTFKDPDS 80
           + DTT TK+FVGGLAW+T    ++RYF+QFGEILEAVIITDK TG+SKGYGFVTF+D DS
Sbjct: 11  FGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDS 70

Query: 81  AIRASQNPSPVIDGRTANCNLAS 104
           A RA  +P+PVIDGR ANCN+AS
Sbjct: 71  ATRAVADPNPVIDGRKANCNIAS 93

[Close]
BLAST of CmoCh17G005270 vs. NCBI nr
Match: gi|449445662|ref|XP_004140591.1| (PREDICTED: RNA-binding protein 24 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 3.4e-39
Identity = 80/94 (85.11%), Postives = 85/94 (90.43%), Query Frame = 1 

Query: 10  NNGGGGGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKG 69
           NN     L GQYNDTTFTKIFVGGLAW+TQRHT++RYFEQFGEILEAV+ITDK TGRSKG
Sbjct: 14  NNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKG 73

Query: 70  YGFVTFKDPDSAIRASQNPSPVIDGRTANCNLAS 104
           YGFVTFKDPD+AIRA QNPSPVIDGR ANCNLAS
Sbjct: 74  YGFVTFKDPDAAIRACQNPSPVIDGRRANCNLAS 107

[Close]
BLAST of CmoCh17G005270 vs. NCBI nr
Match: gi|659120078|ref|XP_008460001.1| (PREDICTED: RNA-binding protein 24-B [Cucumis melo])

HSP 1 Score: 169.5 bits (428), Expect = 3.4e-39
Identity = 80/94 (85.11%), Postives = 85/94 (90.43%), Query Frame = 1 

Query: 10  NNGGGGGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKG 69
           NN     L GQYNDTTFTKIFVGGLAW+TQRHT++RYFEQFGEILEAV+ITDK TGRSKG
Sbjct: 14  NNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKG 73

Query: 70  YGFVTFKDPDSAIRASQNPSPVIDGRTANCNLAS 104
           YGFVTFKDPD+AIRA QNPSPVIDGR ANCNLAS
Sbjct: 74  YGFVTFKDPDAAIRACQNPSPVIDGRRANCNLAS 107

[Close]
BLAST of CmoCh17G005270 vs. NCBI nr
Match: gi|566158623|ref|XP_002301439.2| (hypothetical protein POPTR_0002s17990g [Populus trichocarpa])

HSP 1 Score: 167.2 bits (422), Expect = 1.7e-38
Identity = 83/103 (80.58%), Postives = 90/103 (87.38%), Query Frame = 1 

Query: 1   MSQQHWQFLNNGGGGGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIIT 60
           M+QQ  QF   GGG    GQYNDTTFTKIFVGGLAW+TQR T++RYFEQFGEILEAV+IT
Sbjct: 1   MAQQR-QFQMAGGGNS--GQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVIT 60

Query: 61  DKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLAS 104
           DK TGRSKGYGFVTFKDPD+A+RA QNPSPVIDGR ANCNLAS
Sbjct: 61  DKNTGRSKGYGFVTFKDPDAAMRACQNPSPVIDGRRANCNLAS 100

[Close]
BLAST of CmoCh17G005270 vs. NCBI nr
Match: gi|643716793|gb|KDP28419.1| (hypothetical protein JCGZ_14190 [Jatropha curcas])

HSP 1 Score: 165.6 bits (418), Expect = 4.9e-38
Identity = 78/90 (86.67%), Postives = 83/90 (92.22%), Query Frame = 1 

Query: 14  GGGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFV 73
           GG   GQYNDTTFTKIFVGGLAW+TQR T++RYFEQFGEILEAV+ITDK TGRSKGYGFV
Sbjct: 17  GGSNLGQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 76

Query: 74  TFKDPDSAIRASQNPSPVIDGRTANCNLAS 104
           TFKDPDSA+RA QNPSPVIDGR ANCNLAS
Sbjct: 77  TFKDPDSAMRACQNPSPVIDGRRANCNLAS 106

[Close]
BLAST of CmoCh17G005270 vs. NCBI nr
Match: gi|802694206|ref|XP_012083109.1| (PREDICTED: RNA-binding protein 38 [Jatropha curcas])

HSP 1 Score: 165.6 bits (418), Expect = 4.9e-38
Identity = 78/90 (86.67%), Postives = 83/90 (92.22%), Query Frame = 1 

Query: 14  GGGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFV 73
           GG   GQYNDTTFTKIFVGGLAW+TQR T++RYFEQFGEILEAV+ITDK TGRSKGYGFV
Sbjct: 22  GGSNLGQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 81

Query: 74  TFKDPDSAIRASQNPSPVIDGRTANCNLAS 104
           TFKDPDSA+RA QNPSPVIDGR ANCNLAS
Sbjct: 82  TFKDPDSAMRACQNPSPVIDGRRANCNLAS 111

The following BLAST results are available for this feature:
BLAST of CmoCh17G005270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ARP1_ARATH6.2e-2560.23Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1[more]
RBM38_HUMAN2.0e-2359.09RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2[more]
RBM38_MOUSE5.8e-2360.71RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2[more]
RBM24_DANRE5.8e-2362.50RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1[more]
RBM38_CHICK9.8e-2362.50RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1[more]
BLAST of CmoCh17G005270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K998_CUCSA2.3e-3985.11Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087740 PE=4 SV=1[more]
B9GRQ8_POPTR1.2e-3880.58Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s17990g PE=4 SV=2[more]
A0A067K9C7_JATCU3.4e-3886.67Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14190 PE=4 SV=1[more]
B9RNJ8_RICCO5.8e-3880.58RNA-binding region-containing protein, putative OS=Ricinus communis GN=RCOM_1339... [more]
W9S430_9ROSA9.8e-3877.67RNA-binding protein 38 OS=Morus notabilis GN=L484_019636 PE=4 SV=1[more]
BLAST of CmoCh17G005270 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G20880.13.8e-3372.29 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G46780.15.0e-3367.65 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G76460.16.5e-3372.29 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G78260.15.5e-3272.29 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G22330.11.2e-3172.29 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of CmoCh17G005270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445662|ref|XP_004140591.1|3.4e-3985.11PREDICTED: RNA-binding protein 24 [Cucumis sativus][more]
gi|659120078|ref|XP_008460001.1|3.4e-3985.11PREDICTED: RNA-binding protein 24-B [Cucumis melo][more]
gi|566158623|ref|XP_002301439.2|1.7e-3880.58hypothetical protein POPTR_0002s17990g [Populus trichocarpa][more]
gi|643716793|gb|KDP28419.1|4.9e-3886.67hypothetical protein JCGZ_14190 [Jatropha curcas][more]
gi|802694206|ref|XP_012083109.1|4.9e-3886.67PREDICTED: RNA-binding protein 38 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G005270.1CmoCh17G005270.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 29..86
score: 9.0
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 28..100
score: 1.4
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 27..104
score: 17
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 22..105
score: 1.9
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 21..103
score: 2.01
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 22..104
score: 3.5
NoneNo IPR availablePANTHERPTHR24012:SF421SUBFAMILY NOT NAMEDcoord: 22..104
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh17G005270CmaCh08G001580Cucurbita maxima (Rimu)cmacmoB889
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G005270Wax gourdcmowgoB0455
CmoCh17G005270Wax gourdcmowgoB0465
CmoCh17G005270Cucurbita moschata (Rifu)cmocmoB313
CmoCh17G005270Cucurbita moschata (Rifu)cmocmoB318
CmoCh17G005270Cucurbita moschata (Rifu)cmocmoB323
CmoCh17G005270Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G005270Cucurbita maxima (Rimu)cmacmoB895
CmoCh17G005270Cucurbita maxima (Rimu)cmacmoB900
CmoCh17G005270Melon (DHL92) v3.5.1cmomeB306
CmoCh17G005270Watermelon (97103) v1cmowmB346
CmoCh17G005270Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G005270Cucurbita pepo (Zucchini)cmocpeB344
CmoCh17G005270Cucurbita pepo (Zucchini)cmocpeB349
CmoCh17G005270Cucurbita pepo (Zucchini)cmocpeB354
CmoCh17G005270Bottle gourd (USVL1VR-Ls)cmolsiB320
CmoCh17G005270Melon (DHL92) v3.6.1cmomedB351
CmoCh17G005270Silver-seed gourdcarcmoB0113
CmoCh17G005270Silver-seed gourdcarcmoB0116
CmoCh17G005270Silver-seed gourdcarcmoB0117
CmoCh17G005270Silver-seed gourdcarcmoB1295