CmoCh17G005260 (gene) Cucurbita moschata (Rifu)

NameCmoCh17G005260
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRNA-binding protein 38
LocationCmo_Chr17 : 5160168 .. 5161042 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCATAAAAATTCCCACATGCAATCTGAATCTCCATTTCTTTTGCTGAGAATCATGTCAAATCCAAAAATGTTGAACAAATTTGCAGGTGTTGTTGGAAGATTTAGAGATTCATCTGGGATTGTGACCCCCCATGCTTATCATATCCCTTCATCATCTTATATCCATCAGCCCACTACTCAATACTCATACCCTCTTTCAGGATATGGGTAAGGGTTGAAACAAGAACTATAAATGATATCAACAAAATCTAATTTTACCATTTTCCTGTTCTTGATTAAAACTGTCATTTCAGGTTTGCTGGATATTCACAAGACATAATCCATCCATTGGTAGGAATCTATGTTTATATGTTTGTGTTTGTGATCTTGTTGGCATTGATTTTGGTCTGGGCGTTGTGTTTTCAATGCAGAACTATTATGGTGCTTACAGGGGCCAACAATTTTCACCTTATTACTCTGCAAATGGGATTTCAGATCAGGCTAGAATGTTTCAAAATCTCTATCCATATTATGCTCAAAGTAGCCAGGGGTACGCGTTTGGAATTCAGTATCCACACCTAATACAGTACCCGTATCTTCATCAGCAGCACGGTTTGATCGATATCCTATCGCTTCCTGGCTCGAACGCAACAAGAGCAGGTGCTAAATGAACTACAAATGCTTGTAATCTAATCCATTATTGTGTCATTTGATGTTGGGAATTGTTATCTAAAGAATGTCACTTGTTTGGGACATGTTGGTTTTGAAAGTGGTCTGGAGATTTATGTGCAAATTGTAACAGGTACAACAGCAACACCGACATGGGCAGTCGGATCTGGACCTTCACAAGCTTCTTTTGCAATAGCTTCTGAACCGAAGTCTTCGAGTTAA

mRNA sequence

ATGGATCATAAAAATTCCCACATGCAATCTGAATCTCCATTTCTTTTGCTGAGAATCATGTCAAATCCAAAAATGTTGAACAAATTTGCAGGTGTTGTTGGAAGATTTAGAGATTCATCTGGGATTGTGACCCCCCATGCTTATCATATCCCTTCATCATCTTATATCCATCAGCCCACTACTCAATACTCATACCCTCTTTCAGGATATGGGTTTGCTGGATATTCACAAGACATAATCCATCCATTGGTAGGAATCTATGTTTATATGGGCCAACAATTTTCACCTTATTACTCTGCAAATGGGATTTCAGATCAGGCTAGAATGTTTCAAAATCTCTATCCATATTATGCTCAAAGTAGCCAGGGGTACGCGTTTGGAATTCAGTATCCACACCTAATACAGTACCCGTATCTTCATCAGCAGCACGGTTTGATCGATATCCTATCGCTTCCTGGCTCGAACGCAACAAGAGCAGGTACAACAGCAACACCGACATGGGCAGTCGGATCTGGACCTTCACAAGCTTCTTTTGCAATAGCTTCTGAACCGAAGTCTTCGAGTTAA

Coding sequence (CDS)

ATGGATCATAAAAATTCCCACATGCAATCTGAATCTCCATTTCTTTTGCTGAGAATCATGTCAAATCCAAAAATGTTGAACAAATTTGCAGGTGTTGTTGGAAGATTTAGAGATTCATCTGGGATTGTGACCCCCCATGCTTATCATATCCCTTCATCATCTTATATCCATCAGCCCACTACTCAATACTCATACCCTCTTTCAGGATATGGGTTTGCTGGATATTCACAAGACATAATCCATCCATTGGTAGGAATCTATGTTTATATGGGCCAACAATTTTCACCTTATTACTCTGCAAATGGGATTTCAGATCAGGCTAGAATGTTTCAAAATCTCTATCCATATTATGCTCAAAGTAGCCAGGGGTACGCGTTTGGAATTCAGTATCCACACCTAATACAGTACCCGTATCTTCATCAGCAGCACGGTTTGATCGATATCCTATCGCTTCCTGGCTCGAACGCAACAAGAGCAGGTACAACAGCAACACCGACATGGGCAGTCGGATCTGGACCTTCACAAGCTTCTTTTGCAATAGCTTCTGAACCGAAGTCTTCGAGTTAA
BLAST of CmoCh17G005260 vs. TrEMBL
Match: A0A0A0K998_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087740 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.1e-57
Identity = 122/160 (76.25%), Postives = 132/160 (82.50%), Query Frame = 1

Query: 31  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYM 90
           GV GRFR +SGIVTP AYH+ SSSYIHQPT+QYS+PLSGYGFAGYSQD I+PL    VY 
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 91  GQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQYPHLIQYPYLHQQHGLIDILS 150
           GQQFSPYYSANG+S  A MFQNLYPYYAQSSQGY FG+QYPHL+QYPYL QQH    ILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240

Query: 151 LPGSNA---TRAGTTATPTWAVGSGPSQASFAIASEPKSS 188
           LPGSNA   T +GTTAT   AVGSGPSQAS A+ASEP SS
Sbjct: 241 LPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSS 280

BLAST of CmoCh17G005260 vs. TrEMBL
Match: B9RNJ8_RICCO (RNA-binding region-containing protein, putative OS=Ricinus communis GN=RCOM_1339600 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-31
Identity = 76/136 (55.88%), Postives = 91/136 (66.91%), Query Frame = 1

Query: 34  GRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQ 93
           GRFR + G+V P AYH  SSSY+HQPT QY++P S YG++GYSQD I+PL    VY GQQ
Sbjct: 116 GRFRPAPGVVAPPAYHGSSSSYVHQPTGQYTFPYSAYGYSGYSQDTIYPLNYYGVYGGQQ 175

Query: 94  FSPYYSANGISDQARMFQNLYPY---YAQSSQGYAFGIQYPHLIQYPYLHQQHGLIDILS 153
           FSPYYSA G S    MF N YP+   YAQSSQ + +G+QYP ++QYP L Q +G   IL 
Sbjct: 176 FSPYYSA-GASGTPGMFHNYYPFYTQYAQSSQAHGYGVQYPQMVQYPCLPQNYGSTGILQ 235

Query: 154 LPGSNATRAGTTATPT 167
           LP S A    TT   T
Sbjct: 236 LPSSMAMTTTTTGATT 250

BLAST of CmoCh17G005260 vs. TrEMBL
Match: A0A067K9C7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14190 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.0e-31
Identity = 87/177 (49.15%), Postives = 104/177 (58.76%), Query Frame = 1

Query: 34  GRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQ 93
           GRFR + G+V P AYH  SSSYIHQPT QY++P S YG+AGYSQD ++PL    VY GQQ
Sbjct: 122 GRFRSAHGLVAPPAYHGSSSSYIHQPTGQYTFPYSAYGYAGYSQDTVYPLNYYGVYGGQQ 181

Query: 94  FSPYYSANGISDQARMFQNLYPYYAQ---SSQGYAFGIQYPHLIQYPYLHQQHGLIDILS 153
            SPYYS  G S    MF N YP+Y Q   +SQ + FG+QYP ++QYPYL   +G   ILS
Sbjct: 182 LSPYYS-TGASGTPGMFHNFYPFYTQYPHNSQAHGFGVQYPQMVQYPYLPHHYGSTGILS 241

Query: 154 LPGS-----------------NATRAGTTATPTWAVGSGPS--QASFAIASEPKSSS 189
           LP S                   T   TT   T  VG+GP   QAS  +ASE  SS+
Sbjct: 242 LPSSMGMATSTTGATTMTTSPTTTTVATTTATTGVVGAGPGALQAS-GMASEQNSST 296

BLAST of CmoCh17G005260 vs. TrEMBL
Match: A0A061E003_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_005042 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.6e-30
Identity = 79/144 (54.86%), Postives = 94/144 (65.28%), Query Frame = 1

Query: 34  GRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQ 93
           GRFR + G++ P AYH  SS+Y+ QPT QYS P S YG+ GYSQD I+PL    +Y GQQ
Sbjct: 116 GRFRPAPGLMAPPAYHGSSSTYVQQPTGQYSIPYSAYGYTGYSQDSIYPLNYYSLYGGQQ 175

Query: 94  FSPYYSANGISDQARMFQNLYPY---YAQSSQGYAFGIQYPHLIQYPYLHQQHGLIDILS 153
           FSPYY A G S    MF N YP+   YAQ+SQ + FG+QYP ++QYPYL QQ+    ILS
Sbjct: 176 FSPYY-ATGASVTPGMFHNFYPFYAQYAQNSQAHGFGVQYPQMVQYPYLPQQYSSTGILS 235

Query: 154 LPGS---NATRAGTTATPTWAVGS 172
           LP S    AT AG  AT T A  S
Sbjct: 236 LPSSMPMAATTAGIAATNTAATTS 258

BLAST of CmoCh17G005260 vs. TrEMBL
Match: D7U825_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02630 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.6e-30
Identity = 81/161 (50.31%), Postives = 104/161 (64.60%), Query Frame = 1

Query: 34  GRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQ 93
           GRFR + G+V P AYH  SS+Y HQPT+QY++P S YG+ GYSQD ++P+    VY GQQ
Sbjct: 108 GRFRPAPGLVAPPAYHGSSSTYFHQPTSQYAFPYSTYGYTGYSQDSMYPMNFYSVYGGQQ 167

Query: 94  FSPYYSANGISDQARMFQNLYPY---YAQSSQGYAFGIQYPHLIQYPYLHQQHGLIDILS 153
           FSPYY+  G +    +F N YPY   YAQSSQG  FG+QYP ++QYPYL Q +    ILS
Sbjct: 168 FSPYYT-TGATGPPGIFHNFYPYYAQYAQSSQGNGFGVQYPQVMQYPYLPQHYSSAGILS 227

Query: 154 LP---GSNATRAGTTATPTWAVGSGPSQASFAIASEPKSSS 189
           LP   G+  + AG TAT   A G+G S +  A  +  + SS
Sbjct: 228 LPPVAGAATSTAGVTAT-AGAAGTGASASQTAGTTSEQDSS 266

BLAST of CmoCh17G005260 vs. TAIR10
Match: AT2G46780.1 (AT2G46780.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 67.8 bits (164), Expect = 8.2e-12
Identity = 70/210 (33.33%), Postives = 93/210 (44.29%), Query Frame = 1

Query: 34  GRFRDSS---GIVTPHAYHIPSSS---YIHQP----TTQYSYPLSGYGFAGYSQDIIHPL 93
           GRFR      G+V P      SSS   ++HQ     T Q+ +P S YGF+GYSQ+ ++P+
Sbjct: 115 GRFRSPGSGVGLVAPSPQFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEGMYPM 174

Query: 94  --VGIYVYMGQQFSPYYSANGISDQARMFQNLYPYY-----------------AQSSQGY 153
                ++Y GQQFSP Y  +  +    MF   YPYY                 AQ  QG+
Sbjct: 175 NYYNHHLYGGQQFSP-YMGHPSAGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQAQHHQGF 234

Query: 154 AFGIQY-----PHLIQYPYL-HQQHGLID-----------ILSLP--------------G 184
           +F  QY     P L+QYPYL HQ H               ILSLP               
Sbjct: 235 SF--QYTAPPAPPLLQYPYLPHQPHFSSQQQFSSQQPPPPILSLPTSLALSLPSSSSPSS 294

BLAST of CmoCh17G005260 vs. NCBI nr
Match: gi|659120078|ref|XP_008460001.1| (PREDICTED: RNA-binding protein 24-B [Cucumis melo])

HSP 1 Score: 237.7 bits (605), Expect = 1.7e-59
Identity = 125/160 (78.12%), Postives = 134/160 (83.75%), Query Frame = 1

Query: 31  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYM 90
           GV GRFR +SGIVTP AYH+ SSSYIHQPT+QYS+PLSGYGFAGYSQD I+PL    VY 
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 91  GQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQYPHLIQYPYLHQQHGLIDILS 150
           GQQFSPYYSANG+S  A MFQNLYPYYAQSSQGY FGIQYPHL+QYPYL QQHG   ILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240

Query: 151 LPGSNA---TRAGTTATPTWAVGSGPSQASFAIASEPKSS 188
           LPGSNA   T +GTTAT T AVGSGPSQAS A+ASEP SS
Sbjct: 241 LPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSS 280

BLAST of CmoCh17G005260 vs. NCBI nr
Match: gi|449445662|ref|XP_004140591.1| (PREDICTED: RNA-binding protein 24 [Cucumis sativus])

HSP 1 Score: 231.1 bits (588), Expect = 1.6e-57
Identity = 122/160 (76.25%), Postives = 132/160 (82.50%), Query Frame = 1

Query: 31  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYM 90
           GV GRFR +SGIVTP AYH+ SSSYIHQPT+QYS+PLSGYGFAGYSQD I+PL    VY 
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 91  GQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQYPHLIQYPYLHQQHGLIDILS 150
           GQQFSPYYSANG+S  A MFQNLYPYYAQSSQGY FG+QYPHL+QYPYL QQH    ILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240

Query: 151 LPGSNA---TRAGTTATPTWAVGSGPSQASFAIASEPKSS 188
           LPGSNA   T +GTTAT   AVGSGPSQAS A+ASEP SS
Sbjct: 241 LPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSS 280

BLAST of CmoCh17G005260 vs. NCBI nr
Match: gi|223545549|gb|EEF47053.1| (RNA-binding region-containing protein, putative [Ricinus communis])

HSP 1 Score: 144.4 bits (363), Expect = 2.0e-31
Identity = 76/136 (55.88%), Postives = 91/136 (66.91%), Query Frame = 1

Query: 34  GRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQ 93
           GRFR + G+V P AYH  SSSY+HQPT QY++P S YG++GYSQD I+PL    VY GQQ
Sbjct: 116 GRFRPAPGVVAPPAYHGSSSSYVHQPTGQYTFPYSAYGYSGYSQDTIYPLNYYGVYGGQQ 175

Query: 94  FSPYYSANGISDQARMFQNLYPY---YAQSSQGYAFGIQYPHLIQYPYLHQQHGLIDILS 153
           FSPYYSA G S    MF N YP+   YAQSSQ + +G+QYP ++QYP L Q +G   IL 
Sbjct: 176 FSPYYSA-GASGTPGMFHNYYPFYTQYAQSSQAHGYGVQYPQMVQYPCLPQNYGSTGILQ 235

Query: 154 LPGSNATRAGTTATPT 167
           LP S A    TT   T
Sbjct: 236 LPSSMAMTTTTTGATT 250

BLAST of CmoCh17G005260 vs. NCBI nr
Match: gi|1000974797|ref|XP_002515069.2| (PREDICTED: RNA-binding protein 38 [Ricinus communis])

HSP 1 Score: 144.4 bits (363), Expect = 2.0e-31
Identity = 76/136 (55.88%), Postives = 91/136 (66.91%), Query Frame = 1

Query: 34  GRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQ 93
           GRFR + G+V P AYH  SSSY+HQPT QY++P S YG++GYSQD I+PL    VY GQQ
Sbjct: 126 GRFRPAPGVVAPPAYHGSSSSYVHQPTGQYTFPYSAYGYSGYSQDTIYPLNYYGVYGGQQ 185

Query: 94  FSPYYSANGISDQARMFQNLYPY---YAQSSQGYAFGIQYPHLIQYPYLHQQHGLIDILS 153
           FSPYYSA G S    MF N YP+   YAQSSQ + +G+QYP ++QYP L Q +G   IL 
Sbjct: 186 FSPYYSA-GASGTPGMFHNYYPFYTQYAQSSQAHGYGVQYPQMVQYPCLPQNYGSTGILQ 245

Query: 154 LPGSNATRAGTTATPT 167
           LP S A    TT   T
Sbjct: 246 LPSSMAMTTTTTGATT 260

BLAST of CmoCh17G005260 vs. NCBI nr
Match: gi|643716793|gb|KDP28419.1| (hypothetical protein JCGZ_14190 [Jatropha curcas])

HSP 1 Score: 142.9 bits (359), Expect = 5.7e-31
Identity = 87/177 (49.15%), Postives = 104/177 (58.76%), Query Frame = 1

Query: 34  GRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQ 93
           GRFR + G+V P AYH  SSSYIHQPT QY++P S YG+AGYSQD ++PL    VY GQQ
Sbjct: 122 GRFRSAHGLVAPPAYHGSSSSYIHQPTGQYTFPYSAYGYAGYSQDTVYPLNYYGVYGGQQ 181

Query: 94  FSPYYSANGISDQARMFQNLYPYYAQ---SSQGYAFGIQYPHLIQYPYLHQQHGLIDILS 153
            SPYYS  G S    MF N YP+Y Q   +SQ + FG+QYP ++QYPYL   +G   ILS
Sbjct: 182 LSPYYS-TGASGTPGMFHNFYPFYTQYPHNSQAHGFGVQYPQMVQYPYLPHHYGSTGILS 241

Query: 154 LPGS-----------------NATRAGTTATPTWAVGSGPS--QASFAIASEPKSSS 189
           LP S                   T   TT   T  VG+GP   QAS  +ASE  SS+
Sbjct: 242 LPSSMGMATSTTGATTMTTSPTTTTVATTTATTGVVGAGPGALQAS-GMASEQNSST 296

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K998_CUCSA1.1e-5776.25Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087740 PE=4 SV=1[more]
B9RNJ8_RICCO1.4e-3155.88RNA-binding region-containing protein, putative OS=Ricinus communis GN=RCOM_1339... [more]
A0A067K9C7_JATCU4.0e-3149.15Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14190 PE=4 SV=1[more]
A0A061E003_THECC2.6e-3054.86RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_005042 PE=4 SV=1[more]
D7U825_VITVI2.6e-3050.31Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02630 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT2G46780.18.2e-1233.33 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
Match NameE-valueIdentityDescription
gi|659120078|ref|XP_008460001.1|1.7e-5978.13PREDICTED: RNA-binding protein 24-B [Cucumis melo][more]
gi|449445662|ref|XP_004140591.1|1.6e-5776.25PREDICTED: RNA-binding protein 24 [Cucumis sativus][more]
gi|223545549|gb|EEF47053.1|2.0e-3155.88RNA-binding region-containing protein, putative [Ricinus communis][more]
gi|1000974797|ref|XP_002515069.2|2.0e-3155.88PREDICTED: RNA-binding protein 38 [Ricinus communis][more]
gi|643716793|gb|KDP28419.1|5.7e-3149.15hypothetical protein JCGZ_14190 [Jatropha curcas][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G005260.1CmoCh17G005260.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh17G005260CmaCh17G005470Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G005260Cp4.1LG12g04690Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G005260Cp4.1LG17g10510Cucurbita pepo (Zucchini)cmocpeB344
CmoCh17G005260Bhi12G002059Wax gourdcmowgoB0465
CmoCh17G005260Carg04983Silver-seed gourdcarcmoB0113
CmoCh17G005260Carg26109Silver-seed gourdcarcmoB1295
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh17G005260CmoCh08G001570Cucurbita moschata (Rifu)cmocmoB313