CmoCh17G004970 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G004970
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNon-specific phospholipase C2
LocationCmo_Chr17 : 4199891 .. 4200253 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGAACTCTTCCCACGGCTTCAATGACTGCCAAATCCACTGCCTTCTTCTTCCTCCTCCTCCTATTGGCCTTCTATACTCCCCTCCTTCATGGCTCTCCCATCAAGACTATTGTCGTTCTCGTCATGGAGAATCGCTCCTTCAATCACATGCTCGGCTGGATGAAGAAACTCAACCTAAAATCAATGGCGTCGATGGCACTGAATCCAACATCCTCAACGCCGCTGATTCGAAATCGAAACAGTTCTTCTTCAAGGACCAAGCTCACCATGTCGATCCCGACCCTGGCCACTCCTTTCAAGCCATTCGAGAGTAGATTTTCGGCTCCAATGACACCTCTACAAATCATGTTTGTTTAG

mRNA sequence

ATGGGAAGAACTCTTCCCACGGCTTCAATGACTGCCAAATCCACTGCCTTCTTCTTCCTCCTCCTCCTATTGGCCTTCTATACTCCCCTCCTTCATGGCTCTCCCATCAAGACTATTGTCGTTCTCGTCATGGAGAATCGCTCCTTCAATCACATGCTCGGCTGGATGAAGAAACTCAACCTAAAATCAATGGCGTCGATGGCACTGAATCCAACATCCTCAACGCCGCTGATTCGAAATCGAAACAGTTCTTCTTCAAGGACCAAGCTCACCATGTCGATCCCGACCCTGGCCACTCCTTTCAAGCCATTCGAGAGTAGATTTTCGGCTCCAATGACACCTCTACAAATCATGTTTGTTTAG

Coding sequence (CDS)

ATGGGAAGAACTCTTCCCACGGCTTCAATGACTGCCAAATCCACTGCCTTCTTCTTCCTCCTCCTCCTATTGGCCTTCTATACTCCCCTCCTTCATGGCTCTCCCATCAAGACTATTGTCGTTCTCGTCATGGAGAATCGCTCCTTCAATCACATGCTCGGCTGGATGAAGAAACTCAACCTAAAATCAATGGCGTCGATGGCACTGAATCCAACATCCTCAACGCCGCTGATTCGAAATCGAAACAGTTCTTCTTCAAGGACCAAGCTCACCATGTCGATCCCGACCCTGGCCACTCCTTTCAAGCCATTCGAGAGTAGATTTTCGGCTCCAATGACACCTCTACAAATCATGTTTGTTTAG
Homology
[Close]
BLAST of CmoCh17G004970 vs. Swiss-Prot
Match: NPC2_ARATH (Non-specific phospholipase C2 OS=Arabidopsis thaliana GN=NPC2 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-07
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 10 MTAKSTAFFFLLLLLAFYTPLLHGSPIKTIVVLVMENRSFNHMLGWMKKLN--LKSMASM 69
          M+ K+ A   LL +   Y  +   SPIKTIVV+VMENRSF+HMLGWMKKLN  +  +   
Sbjct: 1  MSIKAFALIQLLSVTILYNHVHATSPIKTIVVVVMENRSFDHMLGWMKKLNPEINGVDGS 60

Query: 70 ALNPTS 74
            NP S
Sbjct: 61 ESNPVS 66

[Close]
BLAST of CmoCh17G004970 vs. TrEMBL
Match: B9HNG8_POPTR (Phosphoesterase family protein OS=Populus trichocarpa GN=POPTR_0009s07420g PE=4 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 1 

Query: 9  SMTAKSTAFFFLLLLLAFYTPLLHGSPIKTIVVLVMENRSFNHMLGWMKKLN 61
          +M+ K     FLLLLL  +   +H SPIKT+VV+VMENRSF+HMLGWMKK+N
Sbjct: 4  NMSTKRPTTIFLLLLLVLFHDRIHASPIKTVVVVVMENRSFDHMLGWMKKIN 55

[Close]
BLAST of CmoCh17G004970 vs. TrEMBL
Match: A0A0A0LXS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629050 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-08
Identity = 35/51 (68.63%), Postives = 37/51 (72.55%), Query Frame = 1 

Query: 10 MTAKSTAFFFLLLLLAFYTPLLHGSPIKTIVVLVMENRSFNHMLGWMKKLN 61
          M  KS  FFF    +   TP LH SPI TIVVLVMENRSF+HMLGWMKKLN
Sbjct: 1  MAPKSIPFFFFFFFII--TPFLHASPITTIVVLVMENRSFDHMLGWMKKLN 49

[Close]
BLAST of CmoCh17G004970 vs. TrEMBL
Match: A0A067L463_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22783 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.2e-08
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1 

Query: 8  ASMTAKSTAFFFLLLLLAFYTPLLHGSPIKTIVVLVMENRSFNHMLGWMKKLN 61
          A+  A +++F FLL L+       H SPIKTIVVLVMENRSF+HMLGWMKKLN
Sbjct: 2  ATKKAATSSFLFLLFLIILPHDQTHASPIKTIVVLVMENRSFDHMLGWMKKLN 54

[Close]
BLAST of CmoCh17G004970 vs. TrEMBL
Match: A0A061GU07_THECC (Non-specific phospholipase C2 OS=Theobroma cacao GN=TCM_040916 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-07
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1 

Query: 14 STAFFFLLLLLAFYTPLLHGSPIKTIVVLVMENRSFNHMLGWMKKLN--LKSMASMALNP 73
          +TA FF LL++ F+ P    SPIKTIVVLVMENRSF+HMLGWMKK+N  +  +     NP
Sbjct: 21 NTAIFFFLLIV-FHGPSHAASPIKTIVVLVMENRSFDHMLGWMKKINPEINGVDGTEWNP 80

Query: 74 TSST 76
           S+T
Sbjct: 81 LSTT 83

[Close]
BLAST of CmoCh17G004970 vs. TrEMBL
Match: A0A0D2QQ25_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G133800 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.3e-07
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 1 

Query: 12 AKSTAFFFLLLLLAFYTPLLHGSPIKTIVVLVMENRSFNHMLGWMKKLN--LKSMASMAL 71
          A +  FFF +L  +F     HG PIKTIVVLVMENRSF+HMLGWMKK+N  +  +     
Sbjct: 5  ANTAIFFFFVLFNSFSC---HGGPIKTIVVLVMENRSFDHMLGWMKKINPQINGVDGTEW 64

Query: 72 NPTSST 76
          NP S+T
Sbjct: 65 NPLSTT 67

[Close]
BLAST of CmoCh17G004970 vs. TAIR10
Match: AT2G26870.1 (AT2G26870.1 non-specific phospholipase C2)

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-08
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 10 MTAKSTAFFFLLLLLAFYTPLLHGSPIKTIVVLVMENRSFNHMLGWMKKLN--LKSMASM 69
          M+ K+ A   LL +   Y  +   SPIKTIVV+VMENRSF+HMLGWMKKLN  +  +   
Sbjct: 1  MSIKAFALIQLLSVTILYNHVHATSPIKTIVVVVMENRSFDHMLGWMKKLNPEINGVDGS 60

Query: 70 ALNPTS 74
            NP S
Sbjct: 61 ESNPVS 66

[Close]
BLAST of CmoCh17G004970 vs. TAIR10
Match: AT3G03520.1 (AT3G03520.1 non-specific phospholipase C3)

HSP 1 Score: 50.8 bits (120), Expect = 6.6e-07
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 1 

Query: 34 SPIKTIVVLVMENRSFNHMLGWMKKLN 61
          SPIKTIVVLV ENRSF+HMLGW K+LN
Sbjct: 14 SPIKTIVVLVQENRSFDHMLGWFKELN 40

[Close]
BLAST of CmoCh17G004970 vs. TAIR10
Match: AT3G03530.1 (AT3G03530.1 non-specific phospholipase C4)

HSP 1 Score: 47.0 bits (110), Expect = 9.6e-06
Identity = 26/49 (53.06%), Postives = 32/49 (65.31%), Query Frame = 1 

Query: 35 PIKTIVVLVMENRSFNHMLGWMKKLNLKSMASMALNPTSSTPLIRNRNS 84
          PIKTIVVLV ENRSF+H LGW K+LN +       +P S+T    + NS
Sbjct: 13 PIKTIVVLVQENRSFDHTLGWFKELNREIDGVTKSDPKSNTVSSSDTNS 61

[Close]
BLAST of CmoCh17G004970 vs. TAIR10
Match: AT3G03540.1 (AT3G03540.1 non-specific phospholipase C5)

HSP 1 Score: 47.0 bits (110), Expect = 9.6e-06
Identity = 21/26 (80.77%), Postives = 23/26 (88.46%), Query Frame = 1 

Query: 35 PIKTIVVLVMENRSFNHMLGWMKKLN 61
          PIKTIVVLV ENRSF+H LGW K+LN
Sbjct: 12 PIKTIVVLVQENRSFDHTLGWFKELN 37

[Close]
BLAST of CmoCh17G004970 vs. NCBI nr
Match: gi|659098895|ref|XP_008450341.1| (PREDICTED: non-specific phospholipase C2 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 5.1e-09
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 1 

Query: 10 MTAKSTAFFFLLLLLAFYTPLLHGSPIKTIVVLVMENRSFNHMLGWMKKLN 61
          M  KS +FFF      F+ P LH SPI TIVVLVMENRSF+HMLGWMKKLN
Sbjct: 1  MAPKSISFFFFFFF--FFAPFLHASPINTIVVLVMENRSFDHMLGWMKKLN 49

[Close]
BLAST of CmoCh17G004970 vs. NCBI nr
Match: gi|566186780|ref|XP_002314000.2| (phosphoesterase family protein [Populus trichocarpa])

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-08
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 1 

Query: 9  SMTAKSTAFFFLLLLLAFYTPLLHGSPIKTIVVLVMENRSFNHMLGWMKKLN 61
          +M+ K     FLLLLL  +   +H SPIKT+VV+VMENRSF+HMLGWMKK+N
Sbjct: 4  NMSTKRPTTIFLLLLLVLFHDRIHASPIKTVVVVVMENRSFDHMLGWMKKIN 55

[Close]
BLAST of CmoCh17G004970 vs. NCBI nr
Match: gi|778663829|ref|XP_004139131.2| (PREDICTED: non-specific phospholipase C2 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-08
Identity = 35/51 (68.63%), Postives = 37/51 (72.55%), Query Frame = 1 

Query: 10 MTAKSTAFFFLLLLLAFYTPLLHGSPIKTIVVLVMENRSFNHMLGWMKKLN 61
          M  KS  FFF    +   TP LH SPI TIVVLVMENRSF+HMLGWMKKLN
Sbjct: 1  MAPKSIPFFFFFFFII--TPFLHASPITTIVVLVMENRSFDHMLGWMKKLN 49

[Close]
BLAST of CmoCh17G004970 vs. NCBI nr
Match: gi|802558919|ref|XP_012065897.1| (PREDICTED: non-specific phospholipase C2 [Jatropha curcas])

HSP 1 Score: 65.5 bits (158), Expect = 7.4e-08
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1 

Query: 8  ASMTAKSTAFFFLLLLLAFYTPLLHGSPIKTIVVLVMENRSFNHMLGWMKKLN 61
          A+  A +++F FLL L+       H SPIKTIVVLVMENRSF+HMLGWMKKLN
Sbjct: 2  ATKKAATSSFLFLLFLIILPHDQTHASPIKTIVVLVMENRSFDHMLGWMKKLN 54

[Close]
BLAST of CmoCh17G004970 vs. NCBI nr
Match: gi|743929762|ref|XP_011009118.1| (PREDICTED: non-specific phospholipase C2-like isoform X1 [Populus euphratica])

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1 

Query: 11 TAKSTAFFFLLLLLAFYTPLLHGSPIKTIVVLVMENRSFNHMLGWMKKLN 61
          T + TA F LLLLL      +H S IKT+VV+VMENRSF+HMLGWMKK+N
Sbjct: 7  TKRPTAIFLLLLLLLLLHDRIHASSIKTVVVVVMENRSFDHMLGWMKKIN 56

The following BLAST results are available for this feature:
BLAST of CmoCh17G004970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NPC2_ARATH2.8e-0751.52Non-specific phospholipase C2 OS=Arabidopsis thaliana GN=NPC2 PE=2 SV=1[more]
BLAST of CmoCh17G004970 vs. TrEMBL
Match NameE-valueIdentityDescription
B9HNG8_POPTR1.8e-0861.54Phosphoesterase family protein OS=Populus trichocarpa GN=POPTR_0009s07420g PE=4 ... [more]
A0A0A0LXS4_CUCSA2.3e-0868.63Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629050 PE=4 SV=1[more]
A0A067L463_JATCU5.2e-0864.15Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22783 PE=4 SV=1[more]
A0A061GU07_THECC2.6e-0757.81Non-specific phospholipase C2 OS=Theobroma cacao GN=TCM_040916 PE=4 SV=1[more]
A0A0D2QQ25_GOSRA3.3e-0754.55Uncharacterized protein OS=Gossypium raimondii GN=B456_001G133800 PE=4 SV=1[more]
BLAST of CmoCh17G004970 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G26870.11.6e-0851.52 non-specific phospholipase C2[more]
AT3G03520.16.6e-0785.19 non-specific phospholipase C3[more]
AT3G03530.19.6e-0653.06 non-specific phospholipase C4[more]
AT3G03540.19.6e-0680.77 non-specific phospholipase C5[more]
BLAST of CmoCh17G004970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659098895|ref|XP_008450341.1|5.1e-0968.63PREDICTED: non-specific phospholipase C2 [Cucumis melo][more]
gi|566186780|ref|XP_002314000.2|2.5e-0861.54phosphoesterase family protein [Populus trichocarpa][more]
gi|778663829|ref|XP_004139131.2|3.3e-0868.63PREDICTED: non-specific phospholipase C2 [Cucumis sativus][more]
gi|802558919|ref|XP_012065897.1|7.4e-0864.15PREDICTED: non-specific phospholipase C2 [Jatropha curcas][more]
gi|743929762|ref|XP_011009118.1|1.6e-0764.00PREDICTED: non-specific phospholipase C2-like isoform X1 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007312Phosphoesterase
Vocabulary: Molecular Function
TermDefinition
GO:0016788hydrolase activity, acting on ester bonds
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G004970.1CmoCh17G004970.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007312PhosphoesterasePFAMPF04185Phosphoesterasecoord: 36..61
score: 7.
NoneNo IPR availablePANTHERPTHR31956FAMILY NOT NAMEDcoord: 1..60
score: 4.1
NoneNo IPR availablePANTHERPTHR31956:SF10NON-SPECIFIC PHOSPHOLIPASE C2coord: 1..60
score: 4.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G004970Cucurbita moschata (Rifu)cmocmoB313
CmoCh17G004970Cucurbita moschata (Rifu)cmocmoB323
CmoCh17G004970Cucumber (Gy14) v1cgycmoB0293
CmoCh17G004970Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G004970Cucurbita maxima (Rimu)cmacmoB889
CmoCh17G004970Cucurbita maxima (Rimu)cmacmoB900
CmoCh17G004970Wild cucumber (PI 183967)cmocpiB365
CmoCh17G004970Cucumber (Chinese Long) v2cmocuB362
CmoCh17G004970Melon (DHL92) v3.5.1cmomeB306
CmoCh17G004970Watermelon (Charleston Gray)cmowcgB325
CmoCh17G004970Watermelon (97103) v1cmowmB346
CmoCh17G004970Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G004970Cucurbita pepo (Zucchini)cmocpeB344
CmoCh17G004970Bottle gourd (USVL1VR-Ls)cmolsiB320
CmoCh17G004970Cucumber (Gy14) v2cgybcmoB737
CmoCh17G004970Melon (DHL92) v3.6.1cmomedB351
CmoCh17G004970Silver-seed gourdcarcmoB0113
CmoCh17G004970Silver-seed gourdcarcmoB0117
CmoCh17G004970Cucumber (Chinese Long) v3cmocucB0437
CmoCh17G004970Watermelon (97103) v2cmowmbB361
CmoCh17G004970Wax gourdcmowgoB0455