CmoCh17G004340 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.ACGAAAATTTTGAAAGTTTCATGATCGTAAAAAATTTCCCACTCTTTCCCGCTCTGTAAAAATGTTTCTCTTCCTCCCTCTCCAAAATTTCCCTCCAATCCATCTTCCATAACCAAGCGCATGCACAAATCGAATCCATCAGATTCATCTTTCAACAATCTACAGAAAATAATCAATGGACAATGGTTGCGGCATTTCCAAAACCATTTGTTCAATCTGCTACGAGGATCTAAAGCCTATCGTTGAGGATCTTCAATCCATCTCCATCTGTGGCCATGTCTTCCACGAGCTCTGGTGAGTAATCCTTCGTTGATTTTTGCGTCGAGTTGATATTGTTTTTTCTTTTATTCGTGTGGAATATGGAAGTGATGTAAATTTGTAATTGGAGCTCTTTAGTTTACAGCAGTGGTTTGAGTATTGTTCGAATGGGAAGAAGAAGTACAGTTGTCCTATGTGCAAGCAGAACTGTGTGGCGAAAGATGTCGCGCGGCTGTATTTTCAGTCTGTTGGGGATGCGAATGATTCGATGCTTGCTAAGAAACCGGCCGATTGGGTTGAGAAAGATCCGGAGTTATTGAGAAGTGAGGTCAGGAGGCTGGAAATGAAGGTCACGGTGCTTAATTCGACATTGGAGACTCAGGGGAAGGATCTCAAAGAACTCATTGAGGAGGTATTTCTCCTTGGTTGTTGGGAAAACTAGAACAAACAGATATTTAATATTGAATTATTGGATGTTTAATTTGCAAACAACTTATGAAATTTGAAGAGTCTCTAGAAAGGTTAAAATCTTCGTGTGGTCTTTGGCCTTGATTCTTTGCATACGAATGATAGAATTTTGGCTTATAATTGATCGTCTCTTTATCCCTTTCGCTTATAATTGCTGTGGTGGGATGATTTTACCTCTCTATGTTGGAACATTTTGATTGAAAAGTAATTGGGACCTTTCAAGATAGCTACACAAAATGGGTGTCCCTTTCGTAGTTCAATATTTTTTGATAGGTTCTACTGGAGCTTGTTTGATAAGAGTTTTTGTAACTATTCTTCTTACATCATAACATAGCAATTAGGGAGTGTTTGATATTTCCTAGTTGCTTTGGGGCTTTGGTGATGTCTCATTCCAGTGTCCCTTTTAGCTTTGTTTAATTAATCTTTCCTATGAAAATGACCATGTACTTGGTTGCTGAAGCAAAGAATTTTTTTAAGTGGTTTTTCTTCTACATTTTGGTTTATTTTAATAACTCATGTTTTTCAAAGATGATGGATGTTTGTTTCTTGTGAGTAGTTAGCAGCGAAGCTTCACTTCACTACAGCTAGTACTTATTGGTTTCCTTATGTCCTAAACAACTCAAGACGTTCAGTAATGATTTTCTTCTGAACATCAAAATTTCAATTCTTCAGCTTCTAGATAAAGCTCCATCTGCTATTATTTTCTCATGTTAAGTATTGATGAGTGCATGTATACACGTGGTTCTTAATCAGATCGTCTTGTTTCAGCTTCAATTTTGCCAGGATGAAGTGAAGAAGGAAGTGGGCTTGAGGAATGAAGCCATGAAACAAAAAACTTCAATGTCTCAATTGCTTAACTTAAAATCTGAGGTCAACAATCCCTTTTAAGTTTATATGTTTTCTTTTTCTTGCAACTTTTTACTTCCTTAATGGACTGATTATGTTATGCATCCATGATGGTTGGCTGCTGATCTGGTATAGGAACTCGAAAAATCAACAGTTGAGTGCGAAAGGTTGCACGATAGAAGTATGGCTTTGGCTAAAGAACTTGCAGCTTTCAAGTTGTAAGTGGGATTTTGTTGTTCAGGAAAATGAAAAGAAAAGCTTTTGTTCCCTTTGGTGTGTTTCGCTTATAACGGTGTTGTCATCTGTATTGCAGAGTATCTGAAGTGGATCTTGATGAAGAGGAGGTTCGTAAGCTTTCTTCATTGGGTAGTGGAGCAGACAATAAAGATACAATCGACATTCTAAGGAAATCATTGGTCCTGCGAAATAGGTAAATGATCTCAAATGACACCAATGTAATCTAAATCAATGATGGTGTAACTTTTAGCAATTGTGTTATTTAGTGTCGTTCAAGTATATACTAATGATTCTTGAAGATCAGACCACTAATGAGAATATGTTTGTATTTCGTCTGGCTAATTCTTTGTTTTCGTTATTCGACAAAATCTTAATTTTCCATAGGAGTTATAAAGAGCTGATGGCAAAGTGCAATCTTCTTGGAAGGGGAGAGGCTCGCTATTGTAAGAAACTTGAGAAGGCAAAAGAGAAAATAAATAAGCTAAAGGTGAGCTCATAACAAAAAAATCTCCTTATTTGATTCATTGGTTCTGATTTAATCGTATGATTATTTCAGGTAAGGGTTCAAGAACTAGAGAAATCCATTGAAGATAAGGACAATGAAGCTCTGAGAGGCTTAAAAGAGGCAAAAAAATCAGGGGTTCAAGGTAGTGTGTGTTGTAAATGTAACACGGTAACAGCAAAAAATAAGCTCGCTGCTTCACCAGATGCTTCAGGTTCAGCTGCAAGCCAGATGAACGAACCATTATCTTCTAGAAAAGGGAAAAATTGTGACTTTGCAAGTGATGTTCTTATCACCGATTTAACCTTAGTAGATTCAGCTAAGAACATGTTCTCCTCAATGAATAAGAAATCTTCAGATTTTTCTCAAATTAAGGAAGCCAATTTAGATTCTAATATAGAACGCCAAATAAGTGAGGAAGAAGCAGACCAAAGATCTTACCATCCTCAGTTGACCGGTTGCAATTTGGTCCGAAAAAAGGCAGCAGAAAGAACAACCAACCTAGTGAATACTATACCTCCAACAGCTACAGTCAATAATACAAGCACGACTGCTGTTCCAGGGGATGAATGCATGCCTTTAGTGATTGAAGACTCTGCAGAATTTGAACCTGTACTTAACATTAGACGAGAATCCTCTAGCCACTTATCACATAACAAACCAGGTAATGGTACATTTTTAAGCGTAGAGTTTCGAAACACATACTTGGTTTCTTTGTTTCTCCAGTAAAGCAATTGATACTGACAACTTGAGGTATAATACAACGTCAGGTATAAGTTTTTCTGGTGGCATACTTGGCCCTGATGGATCAAATAGGTTCTTGGGTAAATGGTGCAAACGTGGTCTGACCAATGGGGGTGCAATGCCAGGTTCACGTTCTGGTGATCTGATTGCAGTTGGCGCTGATGGGAGAGGTGGACAAATTAAAGTCCTGAGATCTCAACATGAATCCTCACGGGTATGTTTATGAATTTATTTCCTCTCCTGCTATTATCTGAAACATATATGGTTGGGTGTTAAATATTAATATAATTAAATTTAGGCTAAATTATAACAATACTCTTATACTTTACAAAAGATATCTCACTTTTAAAAATTTACTAATACCTTTAATCATTCAAAACTTAAATAAAAATGGTTAGTACTTTATTTTTAAAATATCTCTCGAACTTTCAAAAGTTTTTAATGTCCTTAAATTTTTAAACAAAATAGAAAAATATCCTTATCATTAGTACACGAACGGAAACCATGAATAACTTATTTAAAGATATTCATGAACTTTCAAAATTTGCATTAACACCCTTAATGTTTCAAAGAATGTTAATAAATGTCCTAATCTACAACCAATTTTCTCTCTCCCCTGCTTCAATCTTAACATTTCCCTATTTTCTTCTTTTCCAATCTTTTTTAATACATTCTTACTCCCTTTCCATTTTCCAACCTCTAAAACTAGATCCTTCAATCAAGATATATAAGCTAGAGAAAGAAGAAAGGAGAACAATGAAACCACCAAGAGATCATAGGACTTCAAATGTTTTCACAAAATTGTACATTAGTAGTTGAGTGTGAGTTAATATGTTTAAATTTAATACACAAAGGGAGAGACATGTTGAGAATTAAGCCATGGACAACCAAGGGAGGAAAAAAGAAAAGAAAAGAAAACTTGTGCATTATCTAAGTTGTAGTGATGAATATTTTGTTGATTTTTATCTTTTGCAGTTTAAATCAATCTATTTGTTTTGTTATGGTTAGTTAAGGAGGGTTCTCATGATCAAGGATAATATTTTTTTGTCGGCACTTTTTGAATTTAATTGGGCACTTCATTGTTTTATTAAGTTTTGATGGAAGATTTCGATTTTGAGAGTTTGTGAGACTTTATACTTGAAGTTGTAGGTCTTGTTTGGTAGAAAAAATTGATGTAAGAATTGAACAAATGAGATAAAATTTAGAGTATTTTTATGAAAAATTGAAGAAGTGAAAAAAAAAGAAGATGAAAAATCAGAAAATGTTAGGTCATAAATTGAAATAGAGAGTGAAAGTAGGAGTGTTGTAATTTAACATAGTATTGGAGTAGGAGATCTTATGGCTGTTTAATCATTTCGAATATTAATTTCTACTTGTTGGGCCTTTAATAAATTAAGTCCATGAGAGAATGTCGAACTATAGATATATTTAAATTTATTGCAATCTATAGCTAAATTTTTTGGGTTAGGTGGATTTAACATTTCTTTCATTCATTTTCATTCTTCTTGGATGTTGGATCATTCATTCATAACGTTAAAGTTTCCAGTTGGACTATAGCAAATAGAACATAAATTTTCAATGACATTTTGCTGATTGTAATTCAGTAGTGATCCTTTTAGTTCACCTTCTGCATTCTTCATACTTTGATAACATACTGATCTTGTAATTGAAATCTCCAAGTTTCCCATTATAGCTTGCAACAAATTCTCTCTGAACATGCTATTGTATGTAAATTTGTGCAGTTTGACGCGGTTTCAGCAGGGGCAAAGAGGCACAAGAACGGAGTAAAAGATGTTAATATGCGAATAGAACACTTCTTTTCAAGGAGTTAGTCACTAGATAGCTTCTTTTCTAGGTATTAAGTTCGTCATTTTTCGTTACATATAGTAGGTGTAGAAGTGATTAGGCGTGATCTGTTTTTCTTTGCAGAACTTTTTGGTTTCATTATTCTCTTATTCCCTTTGGAGATTAGAGTTATTGGCAACTGGAAAGAGGATTTTTATGTTCTTGCAAGTGCCACTTTCTGGGTCATCCTGTAA ACGAAAATTTTGAAAGTTTCATGATCGTAAAAAATTTCCCACTCTTTCCCGCTCTGTAAAAATGTTTCTCTTCCTCCCTCTCCAAAATTTCCCTCCAATCCATCTTCCATAACCAAGCGCATGCACAAATCGAATCCATCAGATTCATCTTTCAACAATCTACAGAAAATAATCAATGGACAATGGTTGCGGCATTTCCAAAACCATTTGTTCAATCTGCTACGAGGATCTAAAGCCTATCGTTGAGGATCTTCAATCCATCTCCATCTGTGGCCATGTCTTCCACGAGCTCTGTTTACAGCAGTGGTTTGAGTATTGTTCGAATGGGAAGAAGAAGTACAGTTGTCCTATGTGCAAGCAGAACTGTGTGGCGAAAGATGTCGCGCGGCTGTATTTTCAGTCTGTTGGGGATGCGAATGATTCGATGCTTGCTAAGAAACCGGCCGATTGGGTTGAGAAAGATCCGGAGTTATTGAGAAGTGAGGTCAGGAGGCTGGAAATGAAGGTCACGGTGCTTAATTCGACATTGGAGACTCAGGGGAAGGATCTCAAAGAACTCATTGAGGAGCTTCAATTTTGCCAGGATGAAGTGAAGAAGGAAGTGGGCTTGAGGAATGAAGCCATGAAACAAAAAACTTCAATGTCTCAATTGCTTAACTTAAAATCTGAGGAACTCGAAAAATCAACAGTTGAGTGCGAAAGGTTGCACGATAGAAGTATGGCTTTGGCTAAAGAACTTGCAGCTTTCAAGTTAGTATCTGAAGTGGATCTTGATGAAGAGGAGGTTCGTAAGCTTTCTTCATTGGGTAGTGGAGCAGACAATAAAGATACAATCGACATTCTAAGGAAATCATTGGTCCTGCGAAATAGGAGTTATAAAGAGCTGATGGCAAAGTGCAATCTTCTTGGAAGGGGAGAGGCTCGCTATTGTAAGAAACTTGAGAAGGCAAAAGAGAAAATAAATAAGCTAAAGGTAAGGGTTCAAGAACTAGAGAAATCCATTGAAGATAAGGACAATGAAGCTCTGAGAGGCTTAAAAGAGGCAAAAAAATCAGGGGTTCAAGGTAGTGTGTGTTGTAAATGTAACACGGTAACAGCAAAAAATAAGCTCGCTGCTTCACCAGATGCTTCAGGTTCAGCTGCAAGCCAGATGAACGAACCATTATCTTCTAGAAAAGGGAAAAATTGTGACTTTGCAAGTGATGTTCTTATCACCGATTTAACCTTAGTAGATTCAGCTAAGAACATGTTCTCCTCAATGAATAAGAAATCTTCAGATTTTTCTCAAATTAAGGAAGCCAATTTAGATTCTAATATAGAACGCCAAATAAGTGAGGAAGAAGCAGACCAAAGATCTTACCATCCTCAGTTGACCGGTTGCAATTTGGTCCGAAAAAAGGCAGCAGAAAGAACAACCAACCTAGTGAATACTATACCTCCAACAGCTACAGTCAATAATACAAGCACGACTGCTGTTCCAGGGGATGAATGCATGCCTTTAGTGATTGAAGACTCTGCAGAATTTGAACCTGTACTTAACATTAGACGAGAATCCTCTAGCCACTTATCACATAACAAACCAGGTATAAGTTTTTCTGGTGGCATACTTGGCCCTGATGGATCAAATAGGTTCTTGGGTAAATGGTGCAAACGTGGTCTGACCAATGGGGGTGCAATGCCAGGTTCACGTTCTGGTGATCTGATTGCAGTTGGCGCTGATGGGAGAGGTGGACAAATTAAAGTCCTGAGATCTCAACATGAATCCTCACGGTTTGACGCGGTTTCAGCAGGGGCAAAGAGGCACAAGAACGGAGTAAAAGATGTTAATATGCGAATAGAACACTTCTTTTCAAGGAAACTTTTTGGTTTCATTATTCTCTTATTCCCTTTGGAGATTAGAGTTATTGGCAACTGGAAAGAGGATTTTTATGTTCTTGCAAGTGCCACTTTCTGGGTCATCCTGTAA ATGGACAATGGTTGCGGCATTTCCAAAACCATTTGTTCAATCTGCTACGAGGATCTAAAGCCTATCGTTGAGGATCTTCAATCCATCTCCATCTGTGGCCATGTCTTCCACGAGCTCTGTTTACAGCAGTGGTTTGAGTATTGTTCGAATGGGAAGAAGAAGTACAGTTGTCCTATGTGCAAGCAGAACTGTGTGGCGAAAGATGTCGCGCGGCTGTATTTTCAGTCTGTTGGGGATGCGAATGATTCGATGCTTGCTAAGAAACCGGCCGATTGGGTTGAGAAAGATCCGGAGTTATTGAGAAGTGAGGTCAGGAGGCTGGAAATGAAGGTCACGGTGCTTAATTCGACATTGGAGACTCAGGGGAAGGATCTCAAAGAACTCATTGAGGAGCTTCAATTTTGCCAGGATGAAGTGAAGAAGGAAGTGGGCTTGAGGAATGAAGCCATGAAACAAAAAACTTCAATGTCTCAATTGCTTAACTTAAAATCTGAGGAACTCGAAAAATCAACAGTTGAGTGCGAAAGGTTGCACGATAGAAGTATGGCTTTGGCTAAAGAACTTGCAGCTTTCAAGTTAGTATCTGAAGTGGATCTTGATGAAGAGGAGGTTCGTAAGCTTTCTTCATTGGGTAGTGGAGCAGACAATAAAGATACAATCGACATTCTAAGGAAATCATTGGTCCTGCGAAATAGGAGTTATAAAGAGCTGATGGCAAAGTGCAATCTTCTTGGAAGGGGAGAGGCTCGCTATTGTAAGAAACTTGAGAAGGCAAAAGAGAAAATAAATAAGCTAAAGGTAAGGGTTCAAGAACTAGAGAAATCCATTGAAGATAAGGACAATGAAGCTCTGAGAGGCTTAAAAGAGGCAAAAAAATCAGGGGTTCAAGGTAGTGTGTGTTGTAAATGTAACACGGTAACAGCAAAAAATAAGCTCGCTGCTTCACCAGATGCTTCAGGTTCAGCTGCAAGCCAGATGAACGAACCATTATCTTCTAGAAAAGGGAAAAATTGTGACTTTGCAAGTGATGTTCTTATCACCGATTTAACCTTAGTAGATTCAGCTAAGAACATGTTCTCCTCAATGAATAAGAAATCTTCAGATTTTTCTCAAATTAAGGAAGCCAATTTAGATTCTAATATAGAACGCCAAATAAGTGAGGAAGAAGCAGACCAAAGATCTTACCATCCTCAGTTGACCGGTTGCAATTTGGTCCGAAAAAAGGCAGCAGAAAGAACAACCAACCTAGTGAATACTATACCTCCAACAGCTACAGTCAATAATACAAGCACGACTGCTGTTCCAGGGGATGAATGCATGCCTTTAGTGATTGAAGACTCTGCAGAATTTGAACCTGTACTTAACATTAGACGAGAATCCTCTAGCCACTTATCACATAACAAACCAGGTATAAGTTTTTCTGGTGGCATACTTGGCCCTGATGGATCAAATAGGTTCTTGGGTAAATGGTGCAAACGTGGTCTGACCAATGGGGGTGCAATGCCAGGTTCACGTTCTGGTGATCTGATTGCAGTTGGCGCTGATGGGAGAGGTGGACAAATTAAAGTCCTGAGATCTCAACATGAATCCTCACGGTTTGACGCGGTTTCAGCAGGGGCAAAGAGGCACAAGAACGGAGTAAAAGATGTTAATATGCGAATAGAACACTTCTTTTCAAGGAAACTTTTTGGTTTCATTATTCTCTTATTCCCTTTGGAGATTAGAGTTATTGGCAACTGGAAAGAGGATTTTTATGTTCTTGCAAGTGCCACTTTCTGGGTCATCCTGTAA
BLAST of CmoCh17G004340 vs. TrEMBL
Match: A0A0A0K7I6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G006810 PE=4 SV=1) HSP 1 Score: 671.8 bits (1732), Expect = 7.8e-190 Identity = 376/480 (78.33%), Postives = 417/480 (86.88%), Query Frame = 1
BLAST of CmoCh17G004340 vs. TrEMBL
Match: W9R1M5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012918 PE=4 SV=1) HSP 1 Score: 473.8 bits (1218), Expect = 3.1e-130 Identity = 307/602 (51.00%), Postives = 394/602 (65.45%), Query Frame = 1
BLAST of CmoCh17G004340 vs. TrEMBL
Match: V4TXB5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019565mg PE=4 SV=1) HSP 1 Score: 456.8 bits (1174), Expect = 3.9e-125 Identity = 275/574 (47.91%), Postives = 385/574 (67.07%), Query Frame = 1
BLAST of CmoCh17G004340 vs. TrEMBL
Match: A0A067K0G2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14334 PE=4 SV=1) HSP 1 Score: 448.7 bits (1153), Expect = 1.1e-122 Identity = 292/588 (49.66%), Postives = 381/588 (64.80%), Query Frame = 1
BLAST of CmoCh17G004340 vs. TrEMBL
Match: M5XJR6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003258mg PE=4 SV=1) HSP 1 Score: 441.8 bits (1135), Expect = 1.3e-120 Identity = 289/588 (49.15%), Postives = 375/588 (63.78%), Query Frame = 1
BLAST of CmoCh17G004340 vs. TAIR10
Match: AT4G01270.1 (AT4G01270.1 RING/U-box superfamily protein) HSP 1 Score: 292.7 bits (748), Expect = 5.0e-79 Identity = 161/291 (55.33%), Postives = 213/291 (73.20%), Query Frame = 1
BLAST of CmoCh17G004340 vs. TAIR10
Match: AT4G01245.1 (AT4G01245.1 FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 60.8 bits (146), Expect = 3.2e-09 Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1
BLAST of CmoCh17G004340 vs. NCBI nr
Match: gi|778709200|ref|XP_004138487.2| (PREDICTED: E3 ubiquitin-protein ligase TRAIP-like [Cucumis sativus]) HSP 1 Score: 844.0 bits (2179), Expect = 1.6e-241 Identity = 453/563 (80.46%), Postives = 497/563 (88.28%), Query Frame = 1
BLAST of CmoCh17G004340 vs. NCBI nr
Match: gi|659116616|ref|XP_008458166.1| (PREDICTED: E3 ubiquitin-protein ligase TRAIP-like [Cucumis melo]) HSP 1 Score: 838.2 bits (2164), Expect = 9.0e-240 Identity = 451/563 (80.11%), Postives = 495/563 (87.92%), Query Frame = 1
BLAST of CmoCh17G004340 vs. NCBI nr
Match: gi|700190491|gb|KGN45695.1| (hypothetical protein Csa_6G006810 [Cucumis sativus]) HSP 1 Score: 671.8 bits (1732), Expect = 1.1e-189 Identity = 376/480 (78.33%), Postives = 417/480 (86.88%), Query Frame = 1
BLAST of CmoCh17G004340 vs. NCBI nr
Match: gi|703084833|ref|XP_010092577.1| (hypothetical protein L484_012918 [Morus notabilis]) HSP 1 Score: 473.8 bits (1218), Expect = 4.5e-130 Identity = 307/602 (51.00%), Postives = 394/602 (65.45%), Query Frame = 1
BLAST of CmoCh17G004340 vs. NCBI nr
Match: gi|567904928|ref|XP_006444952.1| (hypothetical protein CICLE_v10019565mg [Citrus clementina]) HSP 1 Score: 456.8 bits (1174), Expect = 5.7e-125 Identity = 275/574 (47.91%), Postives = 385/574 (67.07%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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