CmoCh17G002900 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G002900
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionBRCT domain DNA repair protein
LocationCmo_Chr17 : 1751798 .. 1752310 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTTGACTGCTCAAATTTCTTTATAATAGAACGTTTGAGATTCGTTTGAAATAATTTTTGAAGTGCTTGAAAACAAATTTAAAATGTTATTAGAAAGTCATTTCAAATGAACTCTCAACCAACGATGAAATGAAGATCACATCCAAAAGCAATCAAATATCATTTGATGCTCGTGTCCTAATATTGTTGAATGATTATGCAGACATCGTCTTTTTGTAGATCATGTCAAGAGGACTCGTTCGACGATATGGCTCAAGAAAGGTGGAAATAAGTTCCATCCTGTTACCAAACGTCGATAACTTCGTTACATAATCGTCTTGCAGTGTATAGTATATGGTTTTGATGTGCTCTATGTATTAGATTTCATAGTTTAATGTAAATGCTTAGGCTAATAGGGTAAGTGCATGTTATAATTTTATTTATTAATCTTATTATCATAAGGTTATGCAAAATGCAATTATATTTTTATTTATTTTATTATCGAGTAACTTAATGTAATGATGCGATT

mRNA sequence

ATGGATCTTGACTGCTCAAATTTCTTTATAATAGAACGTTTGAGATTCAAAGTCATTTCAAATGAACTCTCAACCAACGATGAAATGAAGATCACATCCAAAAGCAATCAAATATCATTTGATGCTCGTGTCCTAATATTACATCGTCTTTTTGTAGATCATGTCAAGAGGACTCGTTCGACGATATGGCTCAAGAAAGGTGGAAATAAGTTCCATCCTGTTACCAAACGTCGATAACTTCGTTACATAATCGTCTTGCAGTGTATAGTATATGGTTTTGATGTGCTCTATGTATTAGATTTCATAGTTTAATGTAAATGCTTAGGCTAATAGGGTAAGTGCATGTTATAATTTTATTTATTAATCTTATTATCATAAGGTTATGCAAAATGCAATTATATTTTTATTTATTTTATTATCGAGTAACTTAATGTAATGATGCGATT

Coding sequence (CDS)

ATGGATCTTGACTGCTCAAATTTCTTTATAATAGAACGTTTGAGATTCAAAGTCATTTCAAATGAACTCTCAACCAACGATGAAATGAAGATCACATCCAAAAGCAATCAAATATCATTTGATGCTCGTGTCCTAATATTACATCGTCTTTTTGTAGATCATGTCAAGAGGACTCGTTCGACGATATGGCTCAAGAAAGGTGGAAATAAGTTCCATCCTGTTACCAAACGTCGATAA
Homology
[Close]
BLAST of CmoCh17G002900 vs. TrEMBL
Match: A0A0A0KCR3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067940 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 1 

Query: 48   HRLFVDHVKRTRSTIWLKKGGNKFHPVTKRR 79
            HR+FVDHVKRTRSTIWLKK GNKF PVTK +
Sbjct: 1123 HRIFVDHVKRTRSTIWLKKDGNKFQPVTKHQ 1153

[Close]
BLAST of CmoCh17G002900 vs. TrEMBL
Match: A0A067GI13_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002240mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-06
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1 

Query: 48  HRLFVDHVKRTRSTIWLKKGGNKFHPVTKRR 79
           HRLFVD+VKRTRSTIWL+K G+KFHPVTK R
Sbjct: 918 HRLFVDNVKRTRSTIWLRKDGHKFHPVTKLR 948

[Close]
BLAST of CmoCh17G002900 vs. TrEMBL
Match: V4U104_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004184mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-06
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1 

Query: 48   HRLFVDHVKRTRSTIWLKKGGNKFHPVTKRR 79
            HRLFVD+VKRTRSTIWL+K G+KFHPVTK R
Sbjct: 1138 HRLFVDNVKRTRSTIWLRKDGHKFHPVTKLR 1168

[Close]
BLAST of CmoCh17G002900 vs. NCBI nr
Match: gi|449454606|ref|XP_004145045.1| (PREDICTED: uncharacterized protein LOC101217520 isoform X1 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-06
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 1 

Query: 48   HRLFVDHVKRTRSTIWLKKGGNKFHPVTKRR 79
            HR+FVDHVKRTRSTIWLKK GNKF PVTK +
Sbjct: 1123 HRIFVDHVKRTRSTIWLKKDGNKFQPVTKHQ 1153

[Close]
BLAST of CmoCh17G002900 vs. NCBI nr
Match: gi|720089086|ref|XP_010244657.1| (PREDICTED: uncharacterized protein LOC104588427 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-06
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1 

Query: 48   HRLFVDHVKRTRSTIWLKKGGNKFHPVTKRR 79
            HRLFVDHVKRTRSTIWL+K GN+F PVTKR+
Sbjct: 1198 HRLFVDHVKRTRSTIWLRKDGNQFLPVTKRK 1228

[Close]
BLAST of CmoCh17G002900 vs. NCBI nr
Match: gi|659117245|ref|XP_008458498.1| (PREDICTED: uncharacterized protein LOC103497890 isoform X1 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-06
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 1 

Query: 48   HRLFVDHVKRTRSTIWLKKGGNKFHPVTKRR 79
            HRLFVDH+KRTRSTIWLKK  NKF P+TKR+
Sbjct: 1116 HRLFVDHIKRTRSTIWLKKDDNKFQPITKRQ 1146

[Close]
BLAST of CmoCh17G002900 vs. NCBI nr
Match: gi|567853061|ref|XP_006419694.1| (hypothetical protein CICLE_v10004184mg [Citrus clementina])

HSP 1 Score: 58.9 bits (141), Expect = 4.5e-06
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1 

Query: 48   HRLFVDHVKRTRSTIWLKKGGNKFHPVTKRR 79
            HRLFVD+VKRTRSTIWL+K G+KFHPVTK R
Sbjct: 1138 HRLFVDNVKRTRSTIWLRKDGHKFHPVTKLR 1168

[Close]
BLAST of CmoCh17G002900 vs. NCBI nr
Match: gi|641856206|gb|KDO74986.1| (hypothetical protein CISIN_1g002240mg [Citrus sinensis])

HSP 1 Score: 58.9 bits (141), Expect = 4.5e-06
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1 

Query: 48  HRLFVDHVKRTRSTIWLKKGGNKFHPVTKRR 79
           HRLFVD+VKRTRSTIWL+K G+KFHPVTK R
Sbjct: 918 HRLFVDNVKRTRSTIWLRKDGHKFHPVTKLR 948

The following BLAST results are available for this feature:
BLAST of CmoCh17G002900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh17G002900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCR3_CUCSA1.4e-0683.87Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067940 PE=4 SV=1[more]
A0A067GI13_CITSI3.1e-0683.87Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002240mg PE=4 SV=1[more]
V4U104_9ROSI3.1e-0683.87Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004184mg PE=4 SV=1[more]
BLAST of CmoCh17G002900 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh17G002900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449454606|ref|XP_004145045.1|2.0e-0683.87PREDICTED: uncharacterized protein LOC101217520 isoform X1 [Cucumis sativus][more]
gi|720089086|ref|XP_010244657.1|3.4e-0683.87PREDICTED: uncharacterized protein LOC104588427 isoform X1 [Nelumbo nucifera][more]
gi|659117245|ref|XP_008458498.1|3.4e-0680.65PREDICTED: uncharacterized protein LOC103497890 isoform X1 [Cucumis melo][more]
gi|567853061|ref|XP_006419694.1|4.5e-0683.87hypothetical protein CICLE_v10004184mg [Citrus clementina][more]
gi|641856206|gb|KDO74986.1|4.5e-0683.87hypothetical protein CISIN_1g002240mg [Citrus sinensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G002900.1CmoCh17G002900.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh17G002900Lsi09G013900Bottle gourd (USVL1VR-Ls)cmolsiB320
CmoCh17G002900Cla97C06G114970Watermelon (97103) v2cmowmbB361
CmoCh17G002900Bhi12G001562Wax gourdcmowgoB0461
CmoCh17G002900Carg05483Silver-seed gourdcarcmoB0097
CmoCh17G002900Carg15954Silver-seed gourdcarcmoB0446
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G002900Cucurbita moschata (Rifu)cmocmoB198
CmoCh17G002900Cucurbita moschata (Rifu)cmocmoB308
CmoCh17G002900Cucurbita moschata (Rifu)cmocmoB310
CmoCh17G002900Cucumber (Gy14) v1cgycmoB0707
CmoCh17G002900Cucumber (Gy14) v1cgycmoB1000
CmoCh17G002900Cucurbita maxima (Rimu)cmacmoB251
CmoCh17G002900Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G002900Cucurbita maxima (Rimu)cmacmoB810
CmoCh17G002900Cucurbita maxima (Rimu)cmacmoB887
CmoCh17G002900Wild cucumber (PI 183967)cmocpiB352
CmoCh17G002900Wild cucumber (PI 183967)cmocpiB363
CmoCh17G002900Cucumber (Chinese Long) v2cmocuB345
CmoCh17G002900Cucumber (Chinese Long) v2cmocuB360
CmoCh17G002900Melon (DHL92) v3.5.1cmomeB306
CmoCh17G002900Melon (DHL92) v3.5.1cmomeB335
CmoCh17G002900Watermelon (Charleston Gray)cmowcgB316
CmoCh17G002900Watermelon (Charleston Gray)cmowcgB325
CmoCh17G002900Watermelon (97103) v1cmowmB341
CmoCh17G002900Watermelon (97103) v1cmowmB353
CmoCh17G002900Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G002900Cucurbita pepo (Zucchini)cmocpeB351
CmoCh17G002900Cucurbita pepo (Zucchini)cmocpeB365
CmoCh17G002900Cucurbita pepo (Zucchini)cmocpeB373
CmoCh17G002900Bottle gourd (USVL1VR-Ls)cmolsiB342
CmoCh17G002900Cucumber (Gy14) v2cgybcmoB317
CmoCh17G002900Cucumber (Gy14) v2cgybcmoB736
CmoCh17G002900Melon (DHL92) v3.6.1cmomedB351
CmoCh17G002900Melon (DHL92) v3.6.1cmomedB385
CmoCh17G002900Silver-seed gourdcarcmoB0824
CmoCh17G002900Silver-seed gourdcarcmoB1124
CmoCh17G002900Cucumber (Chinese Long) v3cmocucB0420
CmoCh17G002900Cucumber (Chinese Long) v3cmocucB0435
CmoCh17G002900Watermelon (97103) v2cmowmbB351
CmoCh17G002900Wax gourdcmowgoB0472