CmoCh17G002720 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G002720
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Adaptor complexes medium subunit family protein, expressed
Location	Cmo_Chr17 : 1626656 .. 1632298 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCAGCATCAGAGCCATTTGGATCTTCAGCGATTTCGACGCTGGTATTTTCTCCAGGTTATCATTTCCTCATCTGATTATCCTTGAGTGAGAAGAATCGTTGTTGTTTGGATTATTCTTTTTTCAGTTTCATGTTTAATTTCTGTGGCGTCGCAATTGAATAGCTTGATCTTTTCTTTTTATTTTAGAATTTTTCCGTTTGTTTTCCTTTCGAATTAGCGATGCCTGCTTGTATGATGAATACTTGTTTTTTCTTTCCATGGAATCGTACTCGAAAGATGGAATTACTTTCTCACTGTTAACTTGCTTTTGATTTTGATGTTTCGGTGGATATTTTTGATGAGGCATTTCAGAGGTTGAATGCGAGAAAAATTGCTGCAAGGCAAACGATGTGGTTGTATATTTTCTTCATATTTCAATAGCCTAATCTCCGAGATTCCACCTCTATTTGATTCTCTAACTGCTTCTTCCACGCGAGATCAAGAAAATACAGTTTGCTTTTGGCTTTCCTTTACAGGAGGTTTCCAGTGGTGGAGAGGCGGTGGCGAACAGCATGCAAGACCGAGAATGGTAGATGTACTTCAGACGATCTCACGTCTAGCGTGTCTCCAGTACTTTCGAATGATTCTGAGTTAGCTGCTGCATTTGTTGAGAGAAGGAAGAGGTTAGTTGAGATTGTTCACTTCTACTCCTATATATTTTTTTGCTTGTTCAAAAACTAGTTAGGAAGTAATTTATTCCTTCCTTTCTACTAAGTTGATGGCCTAGTTGTAGTGCACAAGCTTTTATGTCACGGTTGTGATGTGCGTCAATTGGAAAATCAATCTATAGCAAGTTTATGTCATCATTAAGTGTGTGCTGTGATCTTATTCTCCCAAAACTTTGTCATCACTAAATGTAATATCGATCTAGCACATACAGTAGTTTTTCTGGTGTCACTGGTTTGAGGATGTGCTAAATATAAGGCATTGTCATCAATAAGTGTGTGTGTAGTATTGTTCTCTTCTCACTATTCTTCGTCATCAATTAATGTAATATCAATCTACCTCGTGCAGTAGATTAACAGGTGGTTGCTGGTCTCATGATTTTAGTAAATGCAAATCTTTGTCGTCACAACGTGTGTGGTTTGATATTGTTCTCACAAAGTATTCTGTTATTGCTTTTGACGAAGGCTGAATGCATAAAAGAATTATGGAAATATGCTGTAATTAGTTGTTATGTTCGTTAAAATTCAAAAAAAAGAATTTGTGGTCATATAAAGAAAGTTCTAATAAAGACTGCCTGATGTTTCCTTCCCCTTTGCAGGGTCTAATAAGACTCACATTGAGGGATTTTCATTCCATCCTTGTGCCCAAGTTCCTGAACATGGCATAGATAAGCAAGCTGTGATGTTTCCTCCCCCACTTGGTAATTTTGTTTTAATGCGTTATCAGGCAATGTGTGCTTTTTGGCCTCCTGTTAAAGGATTTTACCAATTATTCATGGTCTCTGAGGATAAAGGTGCTTTTTTGTTCAAGTTGTGCCTGATGGAAGGTTATAAAGCTCCTCTGTCTATGGAATTCTGTACTGTAACTATGCCCTTTCCTAGAAGAAGGATTGTATCTTTCGATGGAACTCCTTCAATTGGAACAGTTTCTACTACCGAGCATTCAGTTGAGTGGAAAATTTTAGCAACTGGACGAGGGCTCTTGGGAAAAAGTGTTGAGGCAACTTTTCCTGGAACTATTAGGTTTTTCACCCTGGCAAATCCGAAGCTTGCATTCTTCAAGTTCTGCCTCTTCTAGTGTAGAGGAGGCAGATAGTGATATCGAGGCTGAGAGCGCAAGCGATGTGGTCAGTATTGAGGAATTTTTAATGGAGAAAATGAGCAAGGATCATCTTCCTCCAGTCGAACTAGAGGAGCCATTTTGCTGGCAGGCATACAATTATGCGAAGGTAAACTCTTCTTCTGTACTATTAAGCATTACAACGTTTCATTGCTTAGACTTGAGCTCAATCTTGTTATAACGTTCTCACGCCAACATTCTCCCATCATCGCAAGTTGAATGTCCTCATGTTTCCTACCATTATCATATATTTGCTGCCATTATCATTTATTCTGCCATCCTAGAATGTTGTAGACATGTTCTGTCCCCATAGCTCGCGAGTTTCTATACTTTTACTCCAGATGGGTGTTTCAGCGAGTTTAATACACACACACGCACACACATATATATAACAACTCAAAAATGGATGGAATGTTGAATTTGTGCAAGGATTGATCATGGTTTTGAAAATATTTTCTCCAACCCATTGTAATTTTCATATGATTTAATTCCACTTTAGATATAGCTTGAATGTCATGGCATGAAACCTTCTGCATCTTCCTCTTGCCTTTTGCTCGTGTTAAAAATCATGGTTTTATATAATTATCTTCGTGTGGTTAACAAGGTGGAAATACTTAGTGAAATGCCCTACTTATCTGTGCTTGTCTGATGGTATGTTGGGATTTTTTGTCTACTTATTTGGTAGTTCTACTTAAAACAAAACTGCTCCTGACGATCATCAATATTTTTTCTTTTGTTATGTCTCATATGTTCACAAGGCATCGTACGCACATCTCGTAGATGGGTAATCCCATATTTAGGATTAATGATGGTTGGCTGGTACCAATTTGAGACGGTGTATAGCAAGTTGACTGGAACGCTTACTTTTTATGAATTCTGATTTCAGGTATCCTTCAAGATTTTAGGGGCATCATTATCAGGAATATCTGTCGATCCTAAATCTGTGAGTTTCTGATTGTGCTATGTAGATTTTATCCTCCTTTAGTAAGCTAGGCCACTCCTTGCGACAGTACTAATGGGTGGATTCGACTGTCGATAGCATGCATTTATCAGTACATATAGATATTAAATCAGTATGGTTTTAGGTTTAGTTGACATAAATGAAGTTTCTTTTTCAGAGTAGTTAGAGCTTGCTTGCCCAAAGTCACTCAACTTGTCGAGTGTTATTGACCTACCCTCTCTATTTTCACTATTGGGAAGATAAAAGTGTTATTGACCTACACTCTCTTCTCAAAGACAACTTGAGTGTTATTGACCTACACTCTCTATTTTCACTACTGGGAAGACAAAAGTGTTCTACACTCTCTTCTCAAAGACAACTTGAGTGTTATTGACCTACACTCTCTATTTTCACTACTGGGAAGACAAAAGTGTTCTACACTCTCTTCTCAAAGACAACTTGAGTGTTATTGACCTACACTCTCTATTTTCACTACTAGGAAGACAAATTGACCTACACTCTCTTCTCAAAGACAACTTGAGTGTTATTGACCTACACTCTCTATTTTCACTACTGGGAAGATAAAAGTGTTATTGACCTGCACTCTCTTCTCAAAGACAACTTGAGTGTTATTGACCTACCCTCTCTATTTTCACTACTGGGAAGACAAAAGTGTTATTGACTTATACTCTCTTCTCAAAGACAACTTGAGTGTTATTGACCTACACTCTCTATTTTCACTACTGGGAAGACAAAAGTGTTCTACACTCTCTTCTCAAAGACAACTTGAGTGTTATTGACCTACACTCTCTATTTTCACTACTGGGAAGACAAAAGTGTTCTACACTCTCTTCTCAAAGACAACTTGAGTGTTATTGACCTACACTCTCTATTTTCACTACTAGGAAGACAAAAGTGTTATTGACCTACACTCTCTTCTCAAAGACAACTTGAGTGTTATTGTCCTGTACTCGTAAAGACAACTTGAGTGTTATTGTCCTGTACTCGTAAAGACAACTTGAGTGTTATTATCCTATACTCGTAAAGACAACTTGAGTGTTATTGTCCTATACTCGTAAAGACAACTTGAGTGTTATTGATCTATACTCATAAAAACAAGTTGGATGTGATTAACATACACTCTACAACTTGAGGGGAATGTTGAGATATAATATTTTGAGAATATATTATTTATGGAATATATCTTAATATTCTCTCCTTTATGATTTAATTTATAATATATTTTATTTTATTCTCAATATTTAATTAGTTTATATTTTCTTTATTGGTAGGTATTAATTGTTAGTTTGTATCCTATTTAAAGCTTGTAAATATCAATGTCAACACTTTCAATCCAATTCTATTTCTCATTGTATAACATGAAATTAGGGGTTGTTAGGGTCCAAGATGAATTTAGAAGATAGTGATTCTTATGTTATTATTTTGATTAGTCATTTCATTGTCTTAATATTTTGATAGAAAAATATGCTCTTGAAAAAGAGACGACGACCCAATTCACCGCTGGAGTTCGCCTGAAAACGGGCGTCGAGTACTCCAATTTAGCGCCAAATTGGTGAGTGCTTGAAATTATCTCCATGCGCACACACAAGATAAGGGTAAAATTACCACTCTACCCCTGTTTCCTATTGTACGTCTTTGTTTCGAAAATTATTTTAAATACTTATTTTGTTTGCAAATTTTTATAACTCACATCCTTTTCTAATTTAATAAAAAAAATAGACATTTTAGGTGGTATTCATAGAATAAATTCCTTAATTCGAGGTTGATTGTTTTTTTTTTTTTTTTTTTGAGATAATAGGAATTTTATTTAAAGATTTTTAAAATTGTACAATCTAAAAAAAACCTTGAACCCATACGTGTTTCTGTGGTCTTAGTGTAACAGGTTTGTCTGAAAATTATACGTACCTATTTTTTTCCACCGCGTTATGCATTTCGTGTCATTGCCCTTCGTCCGGCTTCGATTTGTCACGTAAGAAGATAAGGCACATAAGCTAATGATTACATAAGAACACCAAAAAAATCATTGTGCTATATTTTCTTTTTGTTAATATATTTATATATTTTATTTTCATTTGGAAGCAGTGTGCACCTGCTTGTCCTGTTCTCATTACAGTGCATGCAGAGAAGCTTTTTGGTACCCTCTAATTGCACTTGTCTGCCTGGTTGGTCATCTGGTGCCCCTCACAATCAGCCTCTGGCCTTCTTAAGGTACGCCTCGGTACACTTATAAATTCTATAGACTTCCTCGCTTGTCTCCAAGCCTGCCATAATAGAATAGATAGGCGAAGCAGCCAATAAATAGCTGTATGTTCTCGCCTATCGATAGTTAGTAGGTTGTTTTCAAGCTCAAACCATTGGAAACGGAATTGGTATTCTCCGCCCCCGCCAAATCTAGTCTAGAGAGAGAACTGAAAGAGAGAAGGAACCAAGATCAGAGAAAATGATCTTAGAGACCTAATAATTCAAACATATTTTTCAAAATAAAAAATTATTTGAACTTTTACAAAAATAAAGGGAAAATGGATTTAAATTTATTGATTAATGCATTTTTAAAAAGTTTAAATCTGTTTTATTCCTGAACTTTCATAGTGCACTCCTTTATGGTTCCCAAACATTCAAGTGATATGTTTTTGTGTCTAAATTTTTGTATCCTTTTAATTTTATATTTGTAAATCATTTTATCTAGAATGCGTGTGCTTTATTTTATTATTTTTTTTGTTGGACGATATAAACTTGTAAGCAACTGCTTGAATAAAGTAAAAATATATTTATGTTTAATTTGTAATGAATGTTTGGGAACCACATTTTAAGAAATTGAAATGAAATTTATATGAAAGTTCAGGGTCAAAACA

mRNA sequence

ATGGTTGCAGCATCAGAGCCATTTGGATCTTCAGCGATTTCGACGCTGAGGTTGAATGCGAGAAAAATTGCTGCAAGGCAAACGATGAGGTTTCCAGTGGTGGAGAGGCGGTGGCGAACAGCATGCAAGACCGAGAATGGTAGATGTACTTCAGACGATCTCACGTCTAGCGTGTCTCCAGTACTTTCGAATGATTCTGAGTTAGCTGCTGCATTTGTTGAGAGAAGGAAGAGACTGCCTGATGTTTCCTTCCCCTTTGCAGGGTCTAATAAGACTCACATTGAGGGATTTTCATTCCATCCTTGTGCCCAAGTTCCTGAACATGGCATAGATAAGCAAGCTGTGATGTTTCCTCCCCCACTTGGTAATTTTGTTTTAATGCGTTATCAGGCAATGTGTGCTTTTTGGCCTCCTGTTAAAGGATTTTACCAATTATTCATGGTCTCTGAGGATAAAGGTGCTTTTTTGTTCAAGTTGTGCCTGATGGAAGGTTATAAAGCTCCTCTGTCTATGGAATTCTGTACTGTAACTATGCCCTTTCCTAGAAGAAGGATTGTATCTTTCGATGGAACTCCTTCAATTGGAACAGTTTCTACTACCGAGCATTCAGTTGAGTGGAAAATTTTAGCAACTGGACGAGGGCTCTTGGGAAAAAGTGTTGAGGCAACTTTTCCTGGAACTATTAGGTTTTTCACCCTGGCAAATCCGAAGCTTGCATTCTTCAATGTAGAGGAGGCAGATAGTGATATCGAGGCTGAGAGCGCAAGCGATGTGGTCAGTATTGAGGAATTTTTAATGGAGAAAATGAGCAAGGATCATCTTCCTCCAGTCGAACTAGAGGAGCCATTTTGCTGGCAGGCATACAATTATGCGAAGGTATCCTTCAAGATTTTAGGGGCATCATTATCAGGAATATCTGTCGATCCTAAATCTGTGAAAAAATATGCTCTTGAAAAAGAGACGACGACCCAATTCACCGCTGGAGTTCGCCTGAAAACGGGCGTCGAGTACTCCAATTTAGCGCCAAATTGGTGAGTGCTTGAAATTATCTCCATGCGCACACACAAGATAAGGTGTGCACCTGCTTGTCCTGTTCTCATTACAGTGCATGCAGAGAAGCTTTTTGGTACCCTCTAATTGCACTTGTCTGCCTGGTTGGTCATCTGGTGCCCCTCACAATCAGCCTCTGGCCTTCTTAAGGTACGCCTCGGTACACTTATAAATTCTATAGACTTCCTCGCTTGTCTCCAAGCCTGCCATAATAGAATAGATAGGCGAAGCAGCCAATAAATAGCTGTATGTTCTCGCCTATCGATAGTTAGTAGGTTGTTTTCAAGCTCAAACCATTGGAAACGGAATTGGTATTCTCCGCCCCCGCCAAATCTAGTCTAGAGAGAGAACTGAAAGAGAGAAGGAACCAAGATCAGAGAAAATGATCTTAGAGACCTAATAATTCAAACATATTTTTCAAAATAAAAAATTATTTGAACTTTTACAAAAATAAAGGGAAAATGGATTTAAATTTATTGATTAATGCATTTTTAAAAAGTTTAAATCTGTTTTATTCCTGAACTTTCATAGTGCACTCCTTTATGGTTCCCAAACATTCAAGTGATATGTTTTTGTGTCTAAATTTTTGTATCCTTTTAATTTTATATTTGTAAATCATTTTATCTAGAATGCGTGTGCTTTATTTTATTATTTTTTTTGTTGGACGATATAAACTTGTAAGCAACTGCTTGAATAAAGTAAAAATATATTTATGTTTAATTTGTAATGAATGTTTGGGAACCACATTTTAAGAAATTGAAATGAAATTTATATGAAAGTTCAGGGTCAAAACA

Coding sequence (CDS)

ATGGTTGCAGCATCAGAGCCATTTGGATCTTCAGCGATTTCGACGCTGAGGTTGAATGCGAGAAAAATTGCTGCAAGGCAAACGATGAGGTTTCCAGTGGTGGAGAGGCGGTGGCGAACAGCATGCAAGACCGAGAATGGTAGATGTACTTCAGACGATCTCACGTCTAGCGTGTCTCCAGTACTTTCGAATGATTCTGAGTTAGCTGCTGCATTTGTTGAGAGAAGGAAGAGACTGCCTGATGTTTCCTTCCCCTTTGCAGGGTCTAATAAGACTCACATTGAGGGATTTTCATTCCATCCTTGTGCCCAAGTTCCTGAACATGGCATAGATAAGCAAGCTGTGATGTTTCCTCCCCCACTTGGTAATTTTGTTTTAATGCGTTATCAGGCAATGTGTGCTTTTTGGCCTCCTGTTAAAGGATTTTACCAATTATTCATGGTCTCTGAGGATAAAGGTGCTTTTTTGTTCAAGTTGTGCCTGATGGAAGGTTATAAAGCTCCTCTGTCTATGGAATTCTGTACTGTAACTATGCCCTTTCCTAGAAGAAGGATTGTATCTTTCGATGGAACTCCTTCAATTGGAACAGTTTCTACTACCGAGCATTCAGTTGAGTGGAAAATTTTAGCAACTGGACGAGGGCTCTTGGGAAAAAGTGTTGAGGCAACTTTTCCTGGAACTATTAGGTTTTTCACCCTGGCAAATCCGAAGCTTGCATTCTTCAATGTAGAGGAGGCAGATAGTGATATCGAGGCTGAGAGCGCAAGCGATGTGGTCAGTATTGAGGAATTTTTAATGGAGAAAATGAGCAAGGATCATCTTCCTCCAGTCGAACTAGAGGAGCCATTTTGCTGGCAGGCATACAATTATGCGAAGGTATCCTTCAAGATTTTAGGGGCATCATTATCAGGAATATCTGTCGATCCTAAATCTGTGAAAAAATATGCTCTTGAAAAAGAGACGACGACCCAATTCACCGCTGGAGTTCGCCTGAAAACGGGCGTCGAGTACTCCAATTTAGCGCCAAATTGGTGA

Homology

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BLAST of CmoCh17G002720 vs. Swiss-Prot
Match: AP5M_ARATH (AP-5 complex subunit mu OS=Arabidopsis thaliana GN=AP5M PE=2 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 4.3e-93
Identity = 172/253 (67.98%), Postives = 201/253 (79.45%), Query Frame = 1


Query: 79  LPDVSFPFAGSNKTHIEGFSFHPCAQVPEHGIDKQAVMFPPPLGNFVLMRYQAMCAFWPP 138
           LPDVSFP AG +  HIE  SFHPCAQVP HGIDKQ ++F PPLGNFVLMRYQA C   PP
Sbjct: 349 LPDVSFPLAGLSTAHIEAISFHPCAQVPAHGIDKQNIVFQPPLGNFVLMRYQAGCGLGPP 408

Query: 139 VKGFYQLFMVSEDKGAFLFKLCLMEGYKAPLSMEFCTVTMPFPRRRIVSFDGTPSIGTVS 198
           VKGFYQL MVSED+GAFLFK+ LMEGYKAPLSMEFCT+TMPFPRRRIV+FDGTPS GTV 
Sbjct: 409 VKGFYQLSMVSEDEGAFLFKVHLMEGYKAPLSMEFCTITMPFPRRRIVAFDGTPSAGTVL 468

Query: 199 TTEHSVEWKILATGRGLLGKSVEATFPGTIRFFTLANPKLAFFNVEEADSDIEAESASDV 258
           TTEHSVEW+IL +GR L GKS+EATFPGTI+F  L + +      +  D + E ESA +V
Sbjct: 469 TTEHSVEWRILGSGRSLSGKSLEATFPGTIKFSPLQSRRKG----DGDDEESEDESAENV 528

Query: 259 VSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKSVKKYALE 318
           V++E+FL++KM+KD LP  ELEEPFCWQAY+YAKVSFKI+GAS+S +S+D KSV  Y   
Sbjct: 529 VNVEDFLVQKMNKD-LPAAELEEPFCWQAYDYAKVSFKIVGASVSRMSIDTKSVNIYPTT 588

Query: 319 K---ETTTQFTAG 329
           K   E + Q T+G
Sbjct: 589 KSPVEFSAQVTSG 596

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BLAST of CmoCh17G002720 vs. TrEMBL
Match: A0A0A0K9K8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G062280 PE=4 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 2.4e-111
Identity = 211/258 (81.78%), Postives = 223/258 (86.43%), Query Frame = 1


Query: 79  LPDVSFPFAGSNKTHIEGFSFHPCAQVPEHGIDKQAVMFPPPLGNFVLMRYQAMCAFWPP 138
           LPDVSFP AGSNK  IEG SFHPCAQVPEHGIDKQAVMF PPLGNFVLMRYQA+CA  PP
Sbjct: 350 LPDVSFPLAGSNKARIEGLSFHPCAQVPEHGIDKQAVMFSPPLGNFVLMRYQAVCAAGPP 409

Query: 139 VKGFYQLFMVSEDKGAFLFKLCLMEGYKAPLSMEFCTVTMPFPRRRIVSFDGTPSIGTVS 198
           VKGFYQL MVSEDKGAFLFKLCLMEGYKAPL MEFCTVTMPFPRRRIVSFDGTPSIGTVS
Sbjct: 410 VKGFYQLSMVSEDKGAFLFKLCLMEGYKAPLCMEFCTVTMPFPRRRIVSFDGTPSIGTVS 469

Query: 199 TTEHSVEWKILATGRGLLGKSVEATFPGTIRFF-----TLANPKLAFFNVEEADSDIEAE 258
           TTEHSVEWKILA+GRGLLGKS+EATFPGTIRF       L +      +VEE DSD+EAE
Sbjct: 470 TTEHSVEWKILASGRGLLGKSIEATFPGTIRFAPWQIQRLHSSSPVTPSVEEVDSDVEAE 529

Query: 259 SASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKSVK 318
           +AS+VV+IEEFLMEKM+KD LPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKSV 
Sbjct: 530 TASNVVNIEEFLMEKMNKD-LPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKSVS 589

Query: 319 KYALEK---ETTTQFTAG 329
            Y   K   E +TQ T+G
Sbjct: 590 IYPAVKAPVEFSTQVTSG 606

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BLAST of CmoCh17G002720 vs. TrEMBL
Match: D7T6N6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02390 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 1.1e-98
Identity = 184/257 (71.60%), Postives = 209/257 (81.32%), Query Frame = 1


Query: 79  LPDVSFPFAGSNKTHIEGFSFHPCAQVPEHGIDKQAVMFPPPLGNFVLMRYQAMCAFWPP 138
           LPDVSFP  G NK  IE  SFHPCAQVPE G+DKQAVMF PPLGNFVLM YQA C   PP
Sbjct: 354 LPDVSFPLTGLNKAGIEVLSFHPCAQVPEQGVDKQAVMFSPPLGNFVLMHYQAFCGLGPP 413

Query: 139 VKGFYQLFMVSEDKGAFLFKLCLMEGYKAPLSMEFCTVTMPFPRRRIVSFDGTPSIGTVS 198
           VKGFYQL MVSED+GAFLFKLCLMEGYKAPL+MEFCTVTMPFPRRR+VSFDGTPSIGTVS
Sbjct: 414 VKGFYQLSMVSEDEGAFLFKLCLMEGYKAPLTMEFCTVTMPFPRRRVVSFDGTPSIGTVS 473

Query: 199 TTEHSVEWKILATGRGLLGKSVEATFPGTIRFFTLANPKL----AFFNVEEADSDIEAES 258
           TTEH VEWKI+  GRGL G+S+EATFPGTI+F      +L    +F   +E DSD E +S
Sbjct: 474 TTEHLVEWKIITGGRGLTGRSIEATFPGTIKFAPWQIQRLPSSRSFLGADE-DSDFETDS 533

Query: 259 ASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKSVKK 318
            +++V++EEFLMEKMSKD LPP +LEEPFCWQAYNYAKV+FKI+GASLSG+S+DPKSV  
Sbjct: 534 TNNMVNVEEFLMEKMSKD-LPPADLEEPFCWQAYNYAKVTFKIVGASLSGMSIDPKSVSI 593

Query: 319 YALEK---ETTTQFTAG 329
           Y   K   E ++Q T+G
Sbjct: 594 YPAVKAPVEFSSQVTSG 608

[Close]

BLAST of CmoCh17G002720 vs. TrEMBL
Match: B9HY90_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s02940g PE=4 SV=2)

HSP 1 Score: 361.7 bits (927), Expect = 1.0e-96
Identity = 181/260 (69.62%), Postives = 207/260 (79.62%), Query Frame = 1


Query: 79  LPDVSFPFAGSNKTHIEGFSFHPCAQVPEHGIDKQAVMFPPPLGNFVLMRYQAMCAFWPP 138
           LPDVS P +G NK H+E  SFHPCAQV EHG DKQAVMF PPLGNFVL+RYQA C F PP
Sbjct: 360 LPDVSLPLSGLNKAHVEVLSFHPCAQVSEHGADKQAVMFSPPLGNFVLVRYQANCGFGPP 419

Query: 139 VKGFYQLFMVSEDKGAFLFKLCLMEGYKAPLSMEFCTVTMPFPRRRIVSFDGTPSIGTVS 198
           +KGFYQL MVSED+GAFLFKL LMEGYKAPL+MEFCTVTMPFPRRR+VSFDGTPS+G V 
Sbjct: 420 IKGFYQLSMVSEDEGAFLFKLHLMEGYKAPLTMEFCTVTMPFPRRRVVSFDGTPSVGAVL 479

Query: 199 TTEHSVEWKILATGRGLLGKSVEATFPGTIRF-------FTLANPKLAFFNVEEADSDIE 258
           TTEHS+EWKI+  GR L GKS+EATFPGT+RF       F  +N    F  + + DSD+E
Sbjct: 480 TTEHSIEWKIIPIGRSLSGKSIEATFPGTVRFAPWQIQRFPPSNS--GFGKMGDEDSDVE 539

Query: 259 AESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKS 318
            ES S++ ++EEFLMEKMSKD LPPV+LEEPFCWQAY YAKVSFKI GASLSG+S+DPKS
Sbjct: 540 IESTSNMANVEEFLMEKMSKD-LPPVDLEEPFCWQAYRYAKVSFKIAGASLSGMSIDPKS 599

Query: 319 VKKYALEK---ETTTQFTAG 329
           V  Y   K   E ++Q T+G
Sbjct: 600 VSIYPAVKAPVEFSSQVTSG 616

[Close]

BLAST of CmoCh17G002720 vs. TrEMBL
Match: B9RSU7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0678700 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 3.8e-96
Identity = 176/258 (68.22%), Postives = 207/258 (80.23%), Query Frame = 1


Query: 79  LPDVSFPFAGSNKTHIEGFSFHPCAQVPEHGIDKQAVMFPPPLGNFVLMRYQAMCAFWPP 138
           LPDVS P  G NK H+E  SFHPCAQ PE   DKQA+MF PPLGNFVL+RYQA CA  PP
Sbjct: 359 LPDVSLPLTGLNKAHVEVLSFHPCAQAPEQAADKQAMMFSPPLGNFVLVRYQANCAIGPP 418

Query: 139 VKGFYQLFMVSEDKGAFLFKLCLMEGYKAPLSMEFCTVTMPFPRRRIVSFDGTPSIGTVS 198
           + GFYQL MVSED+GAFLFKL +MEGYKAPL+MEFC VTMPFPRR++VSFDGTPS+G VS
Sbjct: 419 IMGFYQLSMVSEDEGAFLFKLRIMEGYKAPLTMEFCNVTMPFPRRKVVSFDGTPSLGAVS 478

Query: 199 TTEHSVEWKILATGRGLLGKSVEATFPGTIRFF-----TLANPKLAFFNVEEADSDIEAE 258
           TTEHS+EWKI+ +GR L GKS+EATFPGTIRF       L + K    ++ + DSD+EAE
Sbjct: 479 TTEHSIEWKIIPSGRSLTGKSIEATFPGTIRFAPWQTQRLPSSKTGSGDMSDGDSDVEAE 538

Query: 259 SASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKSVK 318
           S +++V++EEFLM+KMSKD LPPV+LEEPFCWQAYNYAKVSFKI GAS+SG+S+DPKSV 
Sbjct: 539 STNNMVNVEEFLMDKMSKD-LPPVDLEEPFCWQAYNYAKVSFKITGASVSGMSIDPKSVS 598

Query: 319 KYALEK---ETTTQFTAG 329
            Y   K   E +TQ T+G
Sbjct: 599 IYPAVKAPVELSTQVTSG 615

[Close]

BLAST of CmoCh17G002720 vs. TrEMBL
Match: A0A067G8H3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006936mg PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 1.4e-95
Identity = 174/253 (68.77%), Postives = 203/253 (80.24%), Query Frame = 1


Query: 79  LPDVSFPFAGSNKTHIEGFSFHPCAQVPEHGIDKQAVMFPPPLGNFVLMRYQAMCAFWPP 138
           +PDVSFP  G N  H+E  SFHP AQVPE G+DKQAVMF PPLGNFVLMRYQA+C   PP
Sbjct: 355 MPDVSFPLTGLNSAHVEVLSFHPSAQVPEQGVDKQAVMFSPPLGNFVLMRYQAICGLGPP 414

Query: 139 VKGFYQLFMVSEDKGAFLFKLCLMEGYKAPLSMEFCTVTMPFPRRRIVSFDGTPSIGTVS 198
           VKGFYQL MVSED+GAFLFKLCLME YKAPL+MEFC VTM FPRRR+VSFDGTPSIGTVS
Sbjct: 415 VKGFYQLSMVSEDEGAFLFKLCLMESYKAPLTMEFCNVTMLFPRRRVVSFDGTPSIGTVS 474

Query: 199 TTEHSVEWKILATGRGLLGKSVEATFPGTIRFFTLANPKLAFFNVEEADSDIEAESASDV 258
             EHSVEWKI+ +GR L G+S+EATFPGT++F      + +     + DSDIE ++ ++V
Sbjct: 475 NNEHSVEWKIMTSGRALTGRSLEATFPGTVKFAPWQTQRSSSGGTVDEDSDIETDNTNNV 534

Query: 259 VSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKSVKKYALE 318
           V+IEEFLMEKM+ D LPPV+LEEPFCWQAYNYAKVSFKI+GAS+SG+S+DPKSV  Y   
Sbjct: 535 VNIEEFLMEKMNMD-LPPVDLEEPFCWQAYNYAKVSFKIIGASISGMSIDPKSVSIYPAV 594

Query: 319 K---ETTTQFTAG 329
           K   E + Q T+G
Sbjct: 595 KAPVEFSAQVTSG 606

[Close]

BLAST of CmoCh17G002720 vs. TAIR10
Match: AT2G20790.1 (AT2G20790.1 clathrin adaptor complexes medium subunit family protein)

HSP 1 Score: 342.8 bits (878), Expect = 2.4e-94
Identity = 172/253 (67.98%), Postives = 201/253 (79.45%), Query Frame = 1


Query: 79  LPDVSFPFAGSNKTHIEGFSFHPCAQVPEHGIDKQAVMFPPPLGNFVLMRYQAMCAFWPP 138
           LPDVSFP AG +  HIE  SFHPCAQVP HGIDKQ ++F PPLGNFVLMRYQA C   PP
Sbjct: 349 LPDVSFPLAGLSTAHIEAISFHPCAQVPAHGIDKQNIVFQPPLGNFVLMRYQAGCGLGPP 408

Query: 139 VKGFYQLFMVSEDKGAFLFKLCLMEGYKAPLSMEFCTVTMPFPRRRIVSFDGTPSIGTVS 198
           VKGFYQL MVSED+GAFLFK+ LMEGYKAPLSMEFCT+TMPFPRRRIV+FDGTPS GTV 
Sbjct: 409 VKGFYQLSMVSEDEGAFLFKVHLMEGYKAPLSMEFCTITMPFPRRRIVAFDGTPSAGTVL 468

Query: 199 TTEHSVEWKILATGRGLLGKSVEATFPGTIRFFTLANPKLAFFNVEEADSDIEAESASDV 258
           TTEHSVEW+IL +GR L GKS+EATFPGTI+F  L + +      +  D + E ESA +V
Sbjct: 469 TTEHSVEWRILGSGRSLSGKSLEATFPGTIKFSPLQSRRKG----DGDDEESEDESAENV 528

Query: 259 VSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKSVKKYALE 318
           V++E+FL++KM+KD LP  ELEEPFCWQAY+YAKVSFKI+GAS+S +S+D KSV  Y   
Sbjct: 529 VNVEDFLVQKMNKD-LPAAELEEPFCWQAYDYAKVSFKIVGASVSRMSIDTKSVNIYPTT 588

Query: 319 K---ETTTQFTAG 329
           K   E + Q T+G
Sbjct: 589 KSPVEFSAQVTSG 596

[Close]

BLAST of CmoCh17G002720 vs. NCBI nr
Match: gi|659117310|ref|XP_008458532.1| (PREDICTED: AP-5 complex subunit mu [Cucumis melo])

HSP 1 Score: 414.8 bits (1065), Expect = 1.4e-112
Identity = 214/258 (82.95%), Postives = 223/258 (86.43%), Query Frame = 1


Query: 79  LPDVSFPFAGSNKTHIEGFSFHPCAQVPEHGIDKQAVMFPPPLGNFVLMRYQAMCAFWPP 138
           LPDVSFP AGSNK  IEG SFHPCAQVPEHGIDKQAVMF PPLGNFVLMRYQA+CA  PP
Sbjct: 350 LPDVSFPLAGSNKARIEGLSFHPCAQVPEHGIDKQAVMFSPPLGNFVLMRYQAVCAAGPP 409

Query: 139 VKGFYQLFMVSEDKGAFLFKLCLMEGYKAPLSMEFCTVTMPFPRRRIVSFDGTPSIGTVS 198
           VKGFYQL MVSEDKGAFLFKLCLMEGYKAPL MEFCTVTMPFPRRRIVSFDGTPSIGTVS
Sbjct: 410 VKGFYQLSMVSEDKGAFLFKLCLMEGYKAPLCMEFCTVTMPFPRRRIVSFDGTPSIGTVS 469

Query: 199 TTEHSVEWKILATGRGLLGKSVEATFPGTIRFF-----TLANPKLAFFNVEEADSDIEAE 258
           TTEHSVEWKILA+GRGLLGKS+EATFPGTIRF       L +      NVEE DSD+EAE
Sbjct: 470 TTEHSVEWKILASGRGLLGKSIEATFPGTIRFAPWQIQRLYSSSSVTPNVEEVDSDVEAE 529

Query: 259 SASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKSVK 318
           SAS+VV+IEEFLMEKMSKD LPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKSV 
Sbjct: 530 SASNVVNIEEFLMEKMSKD-LPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKSVS 589

Query: 319 KYALEK---ETTTQFTAG 329
            Y   K   E +TQ T+G
Sbjct: 590 IYPAVKAPVEFSTQVTSG 606

[Close]

BLAST of CmoCh17G002720 vs. NCBI nr
Match: gi|449454440|ref|XP_004144963.1| (PREDICTED: AP-5 complex subunit mu [Cucumis sativus])

HSP 1 Score: 410.2 bits (1053), Expect = 3.5e-111
Identity = 211/258 (81.78%), Postives = 223/258 (86.43%), Query Frame = 1


Query: 79  LPDVSFPFAGSNKTHIEGFSFHPCAQVPEHGIDKQAVMFPPPLGNFVLMRYQAMCAFWPP 138
           LPDVSFP AGSNK  IEG SFHPCAQVPEHGIDKQAVMF PPLGNFVLMRYQA+CA  PP
Sbjct: 350 LPDVSFPLAGSNKARIEGLSFHPCAQVPEHGIDKQAVMFSPPLGNFVLMRYQAVCAAGPP 409

Query: 139 VKGFYQLFMVSEDKGAFLFKLCLMEGYKAPLSMEFCTVTMPFPRRRIVSFDGTPSIGTVS 198
           VKGFYQL MVSEDKGAFLFKLCLMEGYKAPL MEFCTVTMPFPRRRIVSFDGTPSIGTVS
Sbjct: 410 VKGFYQLSMVSEDKGAFLFKLCLMEGYKAPLCMEFCTVTMPFPRRRIVSFDGTPSIGTVS 469

Query: 199 TTEHSVEWKILATGRGLLGKSVEATFPGTIRFF-----TLANPKLAFFNVEEADSDIEAE 258
           TTEHSVEWKILA+GRGLLGKS+EATFPGTIRF       L +      +VEE DSD+EAE
Sbjct: 470 TTEHSVEWKILASGRGLLGKSIEATFPGTIRFAPWQIQRLHSSSPVTPSVEEVDSDVEAE 529

Query: 259 SASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKSVK 318
           +AS+VV+IEEFLMEKM+KD LPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKSV 
Sbjct: 530 TASNVVNIEEFLMEKMNKD-LPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKSVS 589

Query: 319 KYALEK---ETTTQFTAG 329
            Y   K   E +TQ T+G
Sbjct: 590 IYPAVKAPVEFSTQVTSG 606

[Close]

BLAST of CmoCh17G002720 vs. NCBI nr
Match: gi|731389029|ref|XP_010649840.1| (PREDICTED: AP-5 complex subunit mu isoform X2 [Vitis vinifera])

HSP 1 Score: 369.4 bits (947), Expect = 6.9e-99
Identity = 185/257 (71.98%), Postives = 209/257 (81.32%), Query Frame = 1


Query: 79  LPDVSFPFAGSNKTHIEGFSFHPCAQVPEHGIDKQAVMFPPPLGNFVLMRYQAMCAFWPP 138
           LPDVSFP  G NK  IE  SFHPCAQVPE G+DKQAVMF PPLGNFVLM YQA C   PP
Sbjct: 354 LPDVSFPLTGLNKAGIEVLSFHPCAQVPEQGVDKQAVMFSPPLGNFVLMHYQAFCGLGPP 413

Query: 139 VKGFYQLFMVSEDKGAFLFKLCLMEGYKAPLSMEFCTVTMPFPRRRIVSFDGTPSIGTVS 198
           VKGFYQL MVSED+GAFLFKLCLMEGYKAPL+MEFCTVTMPFPRRR+VSFDGTPSIGTVS
Sbjct: 414 VKGFYQLSMVSEDEGAFLFKLCLMEGYKAPLTMEFCTVTMPFPRRRVVSFDGTPSIGTVS 473

Query: 199 TTEHSVEWKILATGRGLLGKSVEATFPGTIRFFTLANPKL----AFFNVEEADSDIEAES 258
           TTEH VEWKI+  GRGL G+S+EATFPGTI+F      +L    +F   +E DSD E +S
Sbjct: 474 TTEHLVEWKIITGGRGLTGRSIEATFPGTIKFAPWQIQRLPSSRSFLGADE-DSDFETDS 533

Query: 259 ASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKSVKK 318
            +++V++EEFLMEKMSKD LPP +LEEPFCWQAYNYAKVSFKI+GASLSG+S+DPKSV  
Sbjct: 534 TNNMVNVEEFLMEKMSKD-LPPADLEEPFCWQAYNYAKVSFKIVGASLSGMSIDPKSVSI 593

Query: 319 YALEK---ETTTQFTAG 329
           Y   K   E ++Q T+G
Sbjct: 594 YPAVKAPVEFSSQVTSG 608

[Close]

BLAST of CmoCh17G002720 vs. NCBI nr
Match: gi|225432476|ref|XP_002279067.1| (PREDICTED: AP-5 complex subunit mu isoform X1 [Vitis vinifera])

HSP 1 Score: 368.2 bits (944), Expect = 1.5e-98
Identity = 184/257 (71.60%), Postives = 209/257 (81.32%), Query Frame = 1


Query: 79  LPDVSFPFAGSNKTHIEGFSFHPCAQVPEHGIDKQAVMFPPPLGNFVLMRYQAMCAFWPP 138
           LPDVSFP  G NK  IE  SFHPCAQVPE G+DKQAVMF PPLGNFVLM YQA C   PP
Sbjct: 354 LPDVSFPLTGLNKAGIEVLSFHPCAQVPEQGVDKQAVMFSPPLGNFVLMHYQAFCGLGPP 413

Query: 139 VKGFYQLFMVSEDKGAFLFKLCLMEGYKAPLSMEFCTVTMPFPRRRIVSFDGTPSIGTVS 198
           VKGFYQL MVSED+GAFLFKLCLMEGYKAPL+MEFCTVTMPFPRRR+VSFDGTPSIGTVS
Sbjct: 414 VKGFYQLSMVSEDEGAFLFKLCLMEGYKAPLTMEFCTVTMPFPRRRVVSFDGTPSIGTVS 473

Query: 199 TTEHSVEWKILATGRGLLGKSVEATFPGTIRFFTLANPKL----AFFNVEEADSDIEAES 258
           TTEH VEWKI+  GRGL G+S+EATFPGTI+F      +L    +F   +E DSD E +S
Sbjct: 474 TTEHLVEWKIITGGRGLTGRSIEATFPGTIKFAPWQIQRLPSSRSFLGADE-DSDFETDS 533

Query: 259 ASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKSVKK 318
            +++V++EEFLMEKMSKD LPP +LEEPFCWQAYNYAKV+FKI+GASLSG+S+DPKSV  
Sbjct: 534 TNNMVNVEEFLMEKMSKD-LPPADLEEPFCWQAYNYAKVTFKIVGASLSGMSIDPKSVSI 593

Query: 319 YALEK---ETTTQFTAG 329
           Y   K   E ++Q T+G
Sbjct: 594 YPAVKAPVEFSSQVTSG 608

[Close]

BLAST of CmoCh17G002720 vs. NCBI nr
Match: gi|566188887|ref|XP_002314429.2| (hypothetical protein POPTR_0010s02940g [Populus trichocarpa])

HSP 1 Score: 361.7 bits (927), Expect = 1.4e-96
Identity = 181/260 (69.62%), Postives = 207/260 (79.62%), Query Frame = 1


Query: 79  LPDVSFPFAGSNKTHIEGFSFHPCAQVPEHGIDKQAVMFPPPLGNFVLMRYQAMCAFWPP 138
           LPDVS P +G NK H+E  SFHPCAQV EHG DKQAVMF PPLGNFVL+RYQA C F PP
Sbjct: 360 LPDVSLPLSGLNKAHVEVLSFHPCAQVSEHGADKQAVMFSPPLGNFVLVRYQANCGFGPP 419

Query: 139 VKGFYQLFMVSEDKGAFLFKLCLMEGYKAPLSMEFCTVTMPFPRRRIVSFDGTPSIGTVS 198
           +KGFYQL MVSED+GAFLFKL LMEGYKAPL+MEFCTVTMPFPRRR+VSFDGTPS+G V 
Sbjct: 420 IKGFYQLSMVSEDEGAFLFKLHLMEGYKAPLTMEFCTVTMPFPRRRVVSFDGTPSVGAVL 479

Query: 199 TTEHSVEWKILATGRGLLGKSVEATFPGTIRF-------FTLANPKLAFFNVEEADSDIE 258
           TTEHS+EWKI+  GR L GKS+EATFPGT+RF       F  +N    F  + + DSD+E
Sbjct: 480 TTEHSIEWKIIPIGRSLSGKSIEATFPGTVRFAPWQIQRFPPSNS--GFGKMGDEDSDVE 539

Query: 259 AESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKS 318
            ES S++ ++EEFLMEKMSKD LPPV+LEEPFCWQAY YAKVSFKI GASLSG+S+DPKS
Sbjct: 540 IESTSNMANVEEFLMEKMSKD-LPPVDLEEPFCWQAYRYAKVSFKIAGASLSGMSIDPKS 599

Query: 319 VKKYALEK---ETTTQFTAG 329
           V  Y   K   E ++Q T+G
Sbjct: 600 VSIYPAVKAPVEFSSQVTSG 616

The following BLAST results are available for this feature:

BLAST of CmoCh17G002720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AP5M_ARATH	4.3e-93	67.98	AP-5 complex subunit mu OS=Arabidopsis thaliana GN=AP5M PE=2 SV=1	[more]

BLAST of CmoCh17G002720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9K8_CUCSA	2.4e-111	81.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G062280 PE=4 SV=1	[more]
D7T6N6_VITVI	1.1e-98	71.60	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02390 PE=4 SV=...	[more]
B9HY90_POPTR	1.0e-96	69.62	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s02940g PE=4 SV=2	[more]
B9RSU7_RICCO	3.8e-96	68.22	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0678700 PE=4 SV=1	[more]
A0A067G8H3_CITSI	1.4e-95	68.77	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006936mg PE=4 SV=1	[more]

BLAST of CmoCh17G002720 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20790.1	2.4e-94	67.98	clathrin adaptor complexes medium subunit family protein	[more]

BLAST of CmoCh17G002720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117310\|ref\|XP_008458532.1\|	1.4e-112	82.95	PREDICTED: AP-5 complex subunit mu [Cucumis melo]	[more]
gi\|449454440\|ref\|XP_004144963.1\|	3.5e-111	81.78	PREDICTED: AP-5 complex subunit mu [Cucumis sativus]	[more]
gi\|731389029\|ref\|XP_010649840.1\|	6.9e-99	71.98	PREDICTED: AP-5 complex subunit mu isoform X2 [Vitis vinifera]	[more]
gi\|225432476\|ref\|XP_002279067.1\|	1.5e-98	71.60	PREDICTED: AP-5 complex subunit mu isoform X1 [Vitis vinifera]	[more]
gi\|566188887\|ref\|XP_002314429.2\|	1.4e-96	69.62	hypothetical protein POPTR_0010s02940g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0030131	clathrin adaptor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G002720.1	CmoCh17G002720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.60.40.1170		coord: 87..181 score: 1.
None	No IPR available	PANTHER	PTHR10529	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED	coord: 79..155 score: 1.7E-63coord: 285..312 score: 1.7E-63coord: 173..249 score: 1.7
None	No IPR available	PANTHER	PTHR10529:SF240	AP-5 COMPLEX SUBUNIT MU	coord: 79..155 score: 1.7E-63coord: 285..312 score: 1.7E-63coord: 173..249 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G002720	Cucsa.363480	Cucumber (Gy14) v1	cgycmoB1000
CmoCh17G002720	CmaCh08G011840	Cucurbita maxima (Rimu)	cmacmoB887
CmoCh17G002720	Cla009360	Watermelon (97103) v1	cmowmB353
CmoCh17G002720	Csa6G062280	Cucumber (Chinese Long) v2	cmocuB360
CmoCh17G002720	MELO3C021387	Melon (DHL92) v3.5.1	cmomeB306
CmoCh17G002720	ClCG06G005650	Watermelon (Charleston Gray)	cmowcgB325
CmoCh17G002720	CSPI06G05170	Wild cucumber (PI 183967)	cmocpiB363
CmoCh17G002720	Cp4.1LG12g02450	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G002720	Cp4.1LG17g01070	Cucurbita pepo (Zucchini)	cmocpeB351
CmoCh17G002720	MELO3C021387.2	Melon (DHL92) v3.6.1	cmomedB351
CmoCh17G002720	CsaV3_6G005500	Cucumber (Chinese Long) v3	cmocucB0435
CmoCh17G002720	Cla97C06G115160	Watermelon (97103) v2	cmowmbB361
CmoCh17G002720	Bhi12G001583	Wax gourd	cmowgoB0461
CmoCh17G002720	Carg05466	Silver-seed gourd	carcmoB0097
CmoCh17G002720	Carg15940	Silver-seed gourd	carcmoB0446

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh17G002720	CmoCh08G011550	Cucurbita moschata (Rifu)	cmocmoB310

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G002720	Cucurbita moschata (Rifu)	cmocmoB198
CmoCh17G002720	Cucurbita moschata (Rifu)	cmocmoB308
CmoCh17G002720	Cucumber (Gy14) v1	cgycmoB0707
CmoCh17G002720	Cucurbita maxima (Rimu)	cmacmoB251
CmoCh17G002720	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G002720	Cucurbita maxima (Rimu)	cmacmoB810
CmoCh17G002720	Wild cucumber (PI 183967)	cmocpiB352
CmoCh17G002720	Wild cucumber (PI 183967)	cmocpiB368
CmoCh17G002720	Cucumber (Chinese Long) v2	cmocuB345
CmoCh17G002720	Melon (DHL92) v3.5.1	cmomeB335
CmoCh17G002720	Watermelon (Charleston Gray)	cmowcgB316
CmoCh17G002720	Watermelon (97103) v1	cmowmB341
CmoCh17G002720	Cucurbita pepo (Zucchini)	cmocpeB365
CmoCh17G002720	Cucurbita pepo (Zucchini)	cmocpeB373
CmoCh17G002720	Bottle gourd (USVL1VR-Ls)	cmolsiB320
CmoCh17G002720	Bottle gourd (USVL1VR-Ls)	cmolsiB342
CmoCh17G002720	Cucumber (Gy14) v2	cgybcmoB317
CmoCh17G002720	Cucumber (Gy14) v2	cgybcmoB736
CmoCh17G002720	Melon (DHL92) v3.6.1	cmomedB385
CmoCh17G002720	Silver-seed gourd	carcmoB0824
CmoCh17G002720	Cucumber (Chinese Long) v3	cmocucB0420
CmoCh17G002720	Watermelon (97103) v2	cmowmbB351
CmoCh17G002720	Wax gourd	cmowgoB0472