CmoCh16G012730 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G012730
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Retrovirus-related Pol polyprotein from transposon TNT 1-94) (3.1.13.-)
LocationCmo_Chr16 : 9079522 .. 9080319 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTCCTGAATTTGATCAGGGATTTCGAGTTGCAGAAGATGAAGGAGTCAGAGTCCGTAAAAGAGTACTCTGACAGACTTCTCAGCATCGCCAACAAGGTGAGATTGCTTGGTTCTGTATTAAATGATTCCAAGATCGTTGAAAAGCTGCTAGTCACTCTTCCAGAGAAGTTTGAAGCCATCATTACTACTCTGGAGAACACCAAAGACTTGTCAAAGATTTCTCTTACAGAGCTCTTGAATGCTTTACAAGCGCAAGAGCAAAGGAGGTCTATGAGACAAGAAGGGGTGATTGAAGGTGCCTTACTTGTTAAGCATCAAGACAGCCGCAGGTATAAAAACAACAAAAATTTCAAAAATCAATTGACGTATGGAGATTCATCTGCCAATTATCAAAAGACAAAAGGAGGAGGTTTCAAAAAATCCTATCCACCTTGCTGCCATTGTGAGAAGAAAGGCCATCCACCATACAAGTGTTGGAGAAGACCTGACGCCTTCTGCTCCAAATGCAATCAACTTGGACATGAAGCTGTGATCTGCAAAGCCAAAGATCTGGTGAAAGAAGTAGATGCACAGGTCGTTGATCAAGAAGAAGAAGAAGAAGAAGAAGATCAATTGTTTATGGTCACTTCTTCCTCAAGCAAAGAATCAAGCGAGAGCTGGTTGATTGACAGTGGGTGCACAAATCACATGACATATGACAAGGAGTCTTTTGAGGAATTAAGAGACACCGAGGATAAGAGAGTGAGGATTGGCAACGGTGAACACTTGGAAGTCAGGGAAAAGGCACAGTAG

mRNA sequence

ATGAAAGTCCTGAATTTGATCAGGGATTTCGAGTTGCAGAAGATGAAGGAGTCAGAGTCCGTAAAAGAGTACTCTGACAGACTTCTCAGCATCGCCAACAAGGTGAGATTGCTTGGTTCTGTATTAAATGATTCCAAGATCGTTGAAAAGCTGCTAGTCACTCTTCCAGAGAAGTTTGAAGCCATCATTACTACTCTGGAGAACACCAAAGACTTGTCAAAGATTTCTCTTACAGAGCTCTTGAATGCTTTACAAGCGCAAGAGCAAAGGAGGTCTATGAGACAAGAAGGGGTGATTGAAGGTGCCTTACTTGTTAAGCATCAAGACAGCCGCAGGTATAAAAACAACAAAAATTTCAAAAATCAATTGACGTATGGAGATTCATCTGCCAATTATCAAAAGACAAAAGGAGGAGGTTTCAAAAAATCCTATCCACCTTGCTGCCATTGTGAGAAGAAAGGCCATCCACCATACAAGTGTTGGAGAAGACCTGACGCCTTCTGCTCCAAATGCAATCAACTTGGACATGAAGCTGTGATCTGCAAAGCCAAAGATCTGGTGAAAGAAGTAGATGCACAGGTCGTTGATCAAGAAGAAGAAGAAGAAGAAGAAGATCAATTGTTTATGGTCACTTCTTCCTCAAGCAAAGAATCAAGCGAGAGCTGGTTGATTGACAGTGGGTGCACAAATCACATGACATATGACAAGGAGTCTTTTGAGGAATTAAGAGACACCGAGGATAAGAGAGTGAGGATTGGCAACGGTGAACACTTGGAAGTCAGGGAAAAGGCACAGTAG

Coding sequence (CDS)

ATGAAAGTCCTGAATTTGATCAGGGATTTCGAGTTGCAGAAGATGAAGGAGTCAGAGTCCGTAAAAGAGTACTCTGACAGACTTCTCAGCATCGCCAACAAGGTGAGATTGCTTGGTTCTGTATTAAATGATTCCAAGATCGTTGAAAAGCTGCTAGTCACTCTTCCAGAGAAGTTTGAAGCCATCATTACTACTCTGGAGAACACCAAAGACTTGTCAAAGATTTCTCTTACAGAGCTCTTGAATGCTTTACAAGCGCAAGAGCAAAGGAGGTCTATGAGACAAGAAGGGGTGATTGAAGGTGCCTTACTTGTTAAGCATCAAGACAGCCGCAGGTATAAAAACAACAAAAATTTCAAAAATCAATTGACGTATGGAGATTCATCTGCCAATTATCAAAAGACAAAAGGAGGAGGTTTCAAAAAATCCTATCCACCTTGCTGCCATTGTGAGAAGAAAGGCCATCCACCATACAAGTGTTGGAGAAGACCTGACGCCTTCTGCTCCAAATGCAATCAACTTGGACATGAAGCTGTGATCTGCAAAGCCAAAGATCTGGTGAAAGAAGTAGATGCACAGGTCGTTGATCAAGAAGAAGAAGAAGAAGAAGAAGATCAATTGTTTATGGTCACTTCTTCCTCAAGCAAAGAATCAAGCGAGAGCTGGTTGATTGACAGTGGGTGCACAAATCACATGACATATGACAAGGAGTCTTTTGAGGAATTAAGAGACACCGAGGATAAGAGAGTGAGGATTGGCAACGGTGAACACTTGGAAGTCAGGGAAAAGGCACAGTAG
Homology
[Close]
BLAST of CmoCh16G012730 vs. TrEMBL
Match: M1B1W5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013513 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 3.2e-79
Identity = 171/264 (64.77%), Postives = 201/264 (76.14%), Query Frame = 1 

Query: 1   MKVLNLIRDFELQKMKESESVKEYSDRLLSIANKVRLLGSVLNDSKIVEKLLVTLPEKFE 60
           M+VLNLIRDFE+QKMKE+E++K+YS+RLL+IAN+VRLLGSVLNDS+IVEK+LVT+PE+FE
Sbjct: 87  MQVLNLIRDFEIQKMKETETIKDYSERLLNIANRVRLLGSVLNDSRIVEKILVTVPERFE 146

Query: 61  AIITTLENTKDLSKISLTELLNALQAQEQRRSMRQEGVIEGALLVKHQDSRRYKNNKNFK 120
           A I TLENTKDLSKI+  ELLNALQA EQRR MR+EG  EGAL  K QD  + K  KN K
Sbjct: 147 ATINTLENTKDLSKITFAELLNALQAHEQRRVMREEGNTEGALFAKPQDGGKNKKKKNKK 206

Query: 121 NQLTYGDS-SANYQKTKGGGFKKSYPPCCHCEKKGHPPYKCWRRPDAFCSKCNQLGHEAV 180
           N    G+  SA+  K K G  KKSYP C H  KKGHP YKCWRRPDA CSKCNQLGHE V
Sbjct: 207 N----GEGISASTTKGKSGHSKKSYPLCKH-NKKGHPSYKCWRRPDARCSKCNQLGHEVV 266

Query: 181 ICKAKDLVKEVDAQVVDQEEEEEEEDQLFMVTSSSSKESSESWLIDSGCTNHMTYDKESF 240
           ICK     +E +AQ+VD     +EEDQLF+ T  SS+ SS+ WLIDSGCTNHMT     F
Sbjct: 267 ICKNNGQQQEAEAQIVD----GKEEDQLFVATCFSSRSSSKYWLIDSGCTNHMTNGMSLF 326

Query: 241 EELRDTEDKRVRIGNGEHLEVREK 264
           +EL+ T   +VR+GNG+HL VR K
Sbjct: 327 KELKPTTITKVRLGNGDHLPVRGK 341

[Close]
BLAST of CmoCh16G012730 vs. TrEMBL
Match: A0A151RSW3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_032849 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 9.4e-79
Identity = 160/263 (60.84%), Postives = 201/263 (76.43%), Query Frame = 1 

Query: 1   MKVLNLIRDFELQKMKESESVKEYSDRLLSIANKVRLLGSVLNDSKIVEKLLVTLPEKFE 60
           MKVLNL+R+FELQ+MKESE +KEYSD+LL IANK+RLLGS   DS+IVEK+LVT+PEK+E
Sbjct: 15  MKVLNLMREFELQRMKESEKIKEYSDKLLGIANKIRLLGSNFPDSRIVEKILVTVPEKYE 74

Query: 61  AIITTLENTKDLSKISLTELLNALQAQEQRRSMRQEGVIEGALLVKHQDSRRYKNNKNFK 120
           A I +LENT+DLSKI+  E+L+A QAQEQR  MR++  +EGALLVK Q ++ YK N    
Sbjct: 75  ASIASLENTRDLSKITFAEVLHAFQAQEQRSLMREDHAVEGALLVKSQQAKNYKKNY--- 134

Query: 121 NQLTYGDSSANYQKTKGGGFKKSYPPCCHCEKKGHPPYKCWRRPDAFCSKCNQLGHEAVI 180
                   +++Y K KGG  KKSYPPC HC K GH P+KCW+RPDA C+KCNQ+GHEA+I
Sbjct: 135 -------PASSYDKGKGG--KKSYPPCQHCGKMGHAPFKCWQRPDAKCNKCNQMGHEAII 194

Query: 181 CKAKDLVKEVDAQVVDQEEEEEEEDQLFMVTSSSSKESSESWLIDSGCTNHMTYDKESFE 240
           CK+K+  +E +A+  DQEEE    DQLF+ T   S ESSESWLIDSGCTNHMT++K  F 
Sbjct: 195 CKSKNQQQEEEAKPADQEEE----DQLFVATCFLSSESSESWLIDSGCTNHMTFNKALFR 254

Query: 241 ELRDTEDKRVRIGNGEHLEVREK 264
           +LR T   +VRIGNG+H+ V+ K
Sbjct: 255 DLRPTNVTKVRIGNGDHISVKGK 261

[Close]
BLAST of CmoCh16G012730 vs. TrEMBL
Match: A0A151TNI1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_022187 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.4e-77
Identity = 158/263 (60.08%), Postives = 200/263 (76.05%), Query Frame = 1 

Query: 1   MKVLNLIRDFELQKMKESESVKEYSDRLLSIANKVRLLGSVLNDSKIVEKLLVTLPEKFE 60
           M+VLNL+R+FELQ+MKESE +KEYSD+LL IANK+RLLGS   DS+IVEK+LVT+PEK+E
Sbjct: 109 MQVLNLMREFELQRMKESEKIKEYSDKLLGIANKIRLLGSNFPDSRIVEKILVTVPEKYE 168

Query: 61  AIITTLENTKDLSKISLTELLNALQAQEQRRSMRQEGVIEGALLVKHQDSRRYKNNKNFK 120
           A I +LENT+DLSKI+  E+L+A QAQEQR  MR++  +EGALLVK Q ++ YK N    
Sbjct: 169 ASIASLENTRDLSKITFAEVLHAFQAQEQRSLMREDHAVEGALLVKSQQAKNYKKNY--- 228

Query: 121 NQLTYGDSSANYQKTKGGGFKKSYPPCCHCEKKGHPPYKCWRRPDAFCSKCNQLGHEAVI 180
                   +++Y K KGG  KKSYPPC HC K GH P+KCW+RPDA C+KCNQ+GHEA+I
Sbjct: 229 -------PASSYDKGKGG--KKSYPPCQHCGKMGHAPFKCWQRPDAKCNKCNQMGHEAII 288

Query: 181 CKAKDLVKEVDAQVVDQEEEEEEEDQLFMVTSSSSKESSESWLIDSGCTNHMTYDKESFE 240
           CK+K+  +E +A+  DQEEE    DQLF+ T   S ESSESWLIDS CTNHMT++K  F 
Sbjct: 289 CKSKNQQQEEEAKPADQEEE----DQLFVATCFLSSESSESWLIDSSCTNHMTFNKALFR 348

Query: 241 ELRDTEDKRVRIGNGEHLEVREK 264
           +LR T   +VRIGNG+H+ V+ K
Sbjct: 349 DLRPTNVTKVRIGNGDHISVKGK 355

[Close]
BLAST of CmoCh16G012730 vs. TrEMBL
Match: A0A151RSU4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_032829 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 2.2e-75
Identity = 155/263 (58.94%), Postives = 197/263 (74.90%), Query Frame = 1 

Query: 1   MKVLNLIRDFELQKMKESESVKEYSDRLLSIANKVRLLGSVLNDSKIVEKLLVTLPEKFE 60
           MKVLNL+R+FELQ+MKE E +KEYSD+LL IANK+RLLGS   DS IVEK+LVT+ EK+E
Sbjct: 87  MKVLNLMREFELQRMKEYEKIKEYSDKLLGIANKIRLLGSNFPDSIIVEKILVTVSEKYE 146

Query: 61  AIITTLENTKDLSKISLTELLNALQAQEQRRSMRQEGVIEGALLVKHQDSRRYKNNKNFK 120
           A   +LENT+DLSKI+  E+L+A QAQEQR  MR++  +EGALLVK Q ++ YK N    
Sbjct: 147 ASTASLENTRDLSKITFAEVLHAFQAQEQRSLMREDHAVEGALLVKSQQAKNYKKNY--- 206

Query: 121 NQLTYGDSSANYQKTKGGGFKKSYPPCCHCEKKGHPPYKCWRRPDAFCSKCNQLGHEAVI 180
                   +++Y K KGG  KKSYPPC HC K GH P++CW+RPDA C+KCNQ+GHEA+I
Sbjct: 207 -------PASSYDKGKGG--KKSYPPCQHCGKMGHAPFRCWQRPDAKCNKCNQMGHEAII 266

Query: 181 CKAKDLVKEVDAQVVDQEEEEEEEDQLFMVTSSSSKESSESWLIDSGCTNHMTYDKESFE 240
           CK+K+  +E +A+  DQ+EE    DQLF+ T   S ESSESWLIDSGCTNHMT++K  F 
Sbjct: 267 CKSKNQQQEEEAKAADQKEE----DQLFVATCFLSSESSESWLIDSGCTNHMTFNKALFR 326

Query: 241 ELRDTEDKRVRIGNGEHLEVREK 264
           +LR T   +VRIGNG+H+ V+ K
Sbjct: 327 DLRPTNVTKVRIGNGDHISVKGK 333

[Close]
BLAST of CmoCh16G012730 vs. TrEMBL
Match: A0A0B2QXU6_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja GN=glysoja_032262 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.6e-73
Identity = 155/263 (58.94%), Postives = 199/263 (75.67%), Query Frame = 1 

Query: 1   MKVLNLIRDFELQKMKESESVKEYSDRLLSIANKVRLLGSVLNDSKIVEKLLVTLPEKFE 60
           M+VLNL R+FELQ+M+ESE++KEYS++LL IANK++LLGS   DS+IVEK+LVT+PE++E
Sbjct: 87  MQVLNLRREFELQRMQESETIKEYSNKLLGIANKIKLLGSDFADSRIVEKILVTVPERYE 146

Query: 61  AIITTLENTKDLSKISLTELLNALQAQEQRRSMRQEGVIEGALLVKHQDSRRYKNNKNFK 120
           A I +LENTKDLSKI+L E+L+ALQAQEQRR MRQ+ V+EG L  KH +    K +   K
Sbjct: 147 ASIASLENTKDLSKITLAEVLHALQAQEQRRLMRQDRVVEGVLTAKHHEVDESKKDFFKK 206

Query: 121 NQLTYGDSSANYQKTKGGGFKKSYPPCCHCEKKGHPPYKCWRRPDAFCSKCNQLGHEAVI 180
           NQ    ++SAN Q   G   KK+YPPC HC K GH P++CWRRP+A C+KCNQ+GHE +I
Sbjct: 207 NQPASSENSANNQ---GKDKKKNYPPCQHCGKNGHAPFRCWRRPNAKCNKCNQIGHEVMI 266

Query: 181 CKAKDLVKEVDAQVVDQEEEEEEEDQLFMVTSSSSKESSESWLIDSGCTNHMTYDKESFE 240
           C  K+   E  AQ+ +Q    EEEDQLF+ T   S ESSESWLIDSGCTNHMTYDK  F+
Sbjct: 267 CPNKNHHDE-GAQITNQ----EEEDQLFVATCFLSSESSESWLIDSGCTNHMTYDKTLFK 326

Query: 241 ELRDTEDKRVRIGNGEHLEVREK 264
           +L+ T   +VRIGNG+++ V+ K
Sbjct: 327 DLKPTNVSKVRIGNGDYIPVKGK 341

[Close]
BLAST of CmoCh16G012730 vs. NCBI nr
Match: gi|697187607|ref|XP_009602835.1| (PREDICTED: uncharacterized protein LOC104097920 [Nicotiana tomentosiformis])

HSP 1 Score: 320.5 bits (820), Expect = 2.8e-84
Identity = 166/243 (68.31%), Postives = 200/243 (82.30%), Query Frame = 1 

Query: 1   MKVLNLIRDFELQKMKESESVKEYSDRLLSIANKVRLLGSVLNDSKIVEKLLVTLPEKFE 60
           M+VLNL+R+FELQ+MK+SE++KEYSDRLL+IAN+VRLLGS LNDS+IVEK+LVT+PE+FE
Sbjct: 113 MQVLNLVREFELQRMKDSETIKEYSDRLLNIANRVRLLGSTLNDSRIVEKILVTVPERFE 172

Query: 61  AIITTLENTKDLSKISLTELLNALQAQEQRRSMRQEGVIEGALLVKHQDSRRYKNNKNFK 120
           A ITTLENTKD+SKI+L ELL+A QAQEQRR MRQEG +EGAL VKHQDSRR +  +N K
Sbjct: 173 ATITTLENTKDMSKITLAELLSAFQAQEQRRVMRQEGAVEGALPVKHQDSRRNQKKQNKK 232

Query: 121 NQLTYGDSSANYQKTKGGGFKKSYPPCCHCEKKGHPPYKCWRRPDAFCSKCNQLGHEAVI 180
            Q    ++  N  K K G  K ++PPC HC KKGHPP+KCWRRPDA CSKCNQ GHEAVI
Sbjct: 233 TQGANNENVGNNNKIKTGSKKTNFPPCQHCGKKGHPPFKCWRRPDAKCSKCNQQGHEAVI 292

Query: 181 CKAKDLVKEVDAQVVDQEEEEEEEDQLFMVTSSSSKESSESWLIDSGCTNHMTYDKESFE 240
           CK+K    EV+AQVV+QEE+    DQLF+ T  +S++SSESWLIDSGCTNHMTYDK  F+
Sbjct: 293 CKSKIQQHEVEAQVVEQEED----DQLFVATCFTSRDSSESWLIDSGCTNHMTYDKALFK 351

Query: 241 ELR 244
           E +
Sbjct: 353 EXK 351

[Close]
BLAST of CmoCh16G012730 vs. NCBI nr
Match: gi|823166118|ref|XP_012483005.1| (PREDICTED: uncharacterized protein LOC105797604 [Gossypium raimondii])

HSP 1 Score: 316.6 bits (810), Expect = 4.1e-83
Identity = 165/193 (85.49%), Postives = 175/193 (90.67%), Query Frame = 1 

Query: 1   MKVLNLIRDFELQKMKESESVKEYSDRLLSIANKVRLLGSVLNDSKIVEKLLVTLPEKFE 60
           MKVLNLIRDFELQKMKESESVKEYSDRLLSIANKVRLLGS LNDS+IVEKLLVT+PEKFE
Sbjct: 113 MKVLNLIRDFELQKMKESESVKEYSDRLLSIANKVRLLGSELNDSRIVEKLLVTVPEKFE 172

Query: 61  AIITTLENTKDLSKISLTELLNALQAQEQRRSMRQEGVIEGALLVKHQDSRRYKNNKNFK 120
           A  TTLENTKDLSKISLTELLNALQAQEQRRSM+QEGVIEGAL VKHQD+ RYK  KNFK
Sbjct: 173 ATFTTLENTKDLSKISLTELLNALQAQEQRRSMKQEGVIEGALPVKHQDNNRYKKKKNFK 232

Query: 121 NQLTYGDS-SANYQKTKGGGFKKSYPPCCHCEKKGHPPYKCWRRPDAFCSKCNQLGHEAV 180
           NQ T G++ S NYQK+K GG KKSYPPC HCEKKGHPP+KCW+RPDA CSKCNQLGHEAV
Sbjct: 233 NQSTSGENVSGNYQKSKRGGVKKSYPPCHHCEKKGHPPFKCWKRPDAKCSKCNQLGHEAV 292

Query: 181 ICKAKDLVKEVDA 193
           ICK K  V+EVDA
Sbjct: 293 ICKVKGQVQEVDA 305

[Close]
BLAST of CmoCh16G012730 vs. NCBI nr
Match: gi|659093732|ref|XP_008447689.1| (PREDICTED: uncharacterized protein LOC103490099 [Cucumis melo])

HSP 1 Score: 305.8 bits (782), Expect = 7.2e-80
Identity = 162/265 (61.13%), Postives = 208/265 (78.49%), Query Frame = 1 

Query: 1   MKVLNLIRDFELQKMKESESVKEYSDRLLSIANKVRLLGSVLNDSKIVEKLLVTLPEKFE 60
           M+VLNLIR+F+LQKMKE+ES+KEYS +LL IAN++RLLGS   DS+IVEK+LV++PEKFE
Sbjct: 90  MRVLNLIREFKLQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFE 149

Query: 61  AIITTLENTKDLSKISLTELLNALQAQEQRRSMRQEGVIEGALLVKHQDSRRYKNNKNF- 120
           A I+ LE+TKDL++I+L E+LNALQAQEQRR+MRQEG +EGAL  KH ++ R    K F 
Sbjct: 150 ASISALEHTKDLTQITLAEILNALQAQEQRRAMRQEGSVEGALPAKHHENVRNNKKKKFF 209

Query: 121 -KNQLTYGDSSANYQKTKGGGFKKSYPPCCHCEKKGHPPYKCWRRPDAFCSKCNQLGHEA 180
            KNQ++  +SSA     K G  K SYPPC HC K+GHPP+KCWRRPDA C+KCNQ+GHEA
Sbjct: 210 KKNQISTRESSA---YNKAGVKKGSYPPCSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEA 269

Query: 181 VICKAKDLVKEVDAQVVDQEEEEEEEDQLFMVTSSSSKESSESWLIDSGCTNHMTYDKES 240
           VIC+  +  + V+A++ DQ    EEEDQLF+ T     ES+ESWLIDSGCTNHMT+DKE 
Sbjct: 270 VICRNNNQQQGVEAKIADQ----EEEDQLFVATCFMGGESNESWLIDSGCTNHMTHDKEL 329

Query: 241 FEELRDTEDKRVRIGNGEHLEVREK 264
           F++L+ T   +VRIGNG+++ V+ K
Sbjct: 330 FKDLKPTNITKVRIGNGDYISVKGK 347

[Close]
BLAST of CmoCh16G012730 vs. NCBI nr
Match: gi|823241747|ref|XP_012453556.1| (PREDICTED: uncharacterized protein LOC105775599 [Gossypium raimondii])

HSP 1 Score: 303.1 bits (775), Expect = 4.7e-79
Identity = 161/193 (83.42%), Postives = 171/193 (88.60%), Query Frame = 1 

Query: 1   MKVLNLIRDFELQKMKESESVKEYSDRLLSIANKVRLLGSVLNDSKIVEKLLVTLPEKFE 60
           MKVLNLIRDFELQKMKESESVKEYSDRLLSIANKVRLLG  LNDS+IVEKLLVT+PEKFE
Sbjct: 346 MKVLNLIRDFELQKMKESESVKEYSDRLLSIANKVRLLGFELNDSRIVEKLLVTVPEKFE 405

Query: 61  AIITTLENTKDLSKISLTELLNALQAQEQRRSMRQEGVIEGALLVKHQDSRRYKNNKNFK 120
           A ITTLENTKDLSKISL ELLNALQAQEQRRSMRQEGVIEGAL VKHQD+ RYK  KNFK
Sbjct: 406 ATITTLENTKDLSKISLAELLNALQAQEQRRSMRQEGVIEGALPVKHQDNNRYKKKKNFK 465

Query: 121 NQLTYGD-SSANYQKTKGGGFKKSYPPCCHCEKKGHPPYKCWRRPDAFCSKCNQLGHEAV 180
           NQ T  + SS NYQK+K GG KKSYPPC HCEKKGHPP+K W+RP+  CSKCNQLGHEAV
Sbjct: 466 NQSTSEENSSDNYQKSKRGGVKKSYPPCHHCEKKGHPPFKYWKRPNTKCSKCNQLGHEAV 525

Query: 181 ICKAKDLVKEVDA 193
           ICK K  V++VDA
Sbjct: 526 ICKVKGQVQKVDA 538

[Close]
BLAST of CmoCh16G012730 vs. NCBI nr
Match: gi|1012334254|gb|KYP45621.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 301.6 bits (771), Expect = 1.4e-78
Identity = 160/263 (60.84%), Postives = 201/263 (76.43%), Query Frame = 1 

Query: 1   MKVLNLIRDFELQKMKESESVKEYSDRLLSIANKVRLLGSVLNDSKIVEKLLVTLPEKFE 60
           MKVLNL+R+FELQ+MKESE +KEYSD+LL IANK+RLLGS   DS+IVEK+LVT+PEK+E
Sbjct: 15  MKVLNLMREFELQRMKESEKIKEYSDKLLGIANKIRLLGSNFPDSRIVEKILVTVPEKYE 74

Query: 61  AIITTLENTKDLSKISLTELLNALQAQEQRRSMRQEGVIEGALLVKHQDSRRYKNNKNFK 120
           A I +LENT+DLSKI+  E+L+A QAQEQR  MR++  +EGALLVK Q ++ YK N    
Sbjct: 75  ASIASLENTRDLSKITFAEVLHAFQAQEQRSLMREDHAVEGALLVKSQQAKNYKKNY--- 134

Query: 121 NQLTYGDSSANYQKTKGGGFKKSYPPCCHCEKKGHPPYKCWRRPDAFCSKCNQLGHEAVI 180
                   +++Y K KGG  KKSYPPC HC K GH P+KCW+RPDA C+KCNQ+GHEA+I
Sbjct: 135 -------PASSYDKGKGG--KKSYPPCQHCGKMGHAPFKCWQRPDAKCNKCNQMGHEAII 194

Query: 181 CKAKDLVKEVDAQVVDQEEEEEEEDQLFMVTSSSSKESSESWLIDSGCTNHMTYDKESFE 240
           CK+K+  +E +A+  DQEEE    DQLF+ T   S ESSESWLIDSGCTNHMT++K  F 
Sbjct: 195 CKSKNQQQEEEAKPADQEEE----DQLFVATCFLSSESSESWLIDSGCTNHMTFNKALFR 254

Query: 241 ELRDTEDKRVRIGNGEHLEVREK 264
           +LR T   +VRIGNG+H+ V+ K
Sbjct: 255 DLRPTNVTKVRIGNGDHISVKGK 261

The following BLAST results are available for this feature:
BLAST of CmoCh16G012730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G012730 vs. TrEMBL
Match NameE-valueIdentityDescription
M1B1W5_SOLTU3.2e-7964.77Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013513 PE=4 SV=1[more]
A0A151RSW3_CAJCA9.4e-7960.84Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151TNI1_CAJCA1.4e-7760.08Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151RSU4_CAJCA2.2e-7558.94Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A0B2QXU6_GLYSO1.6e-7358.94Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycin... [more]
BLAST of CmoCh16G012730 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh16G012730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|697187607|ref|XP_009602835.1|2.8e-8468.31PREDICTED: uncharacterized protein LOC104097920 [Nicotiana tomentosiformis][more]
gi|823166118|ref|XP_012483005.1|4.1e-8385.49PREDICTED: uncharacterized protein LOC105797604 [Gossypium raimondii][more]
gi|659093732|ref|XP_008447689.1|7.2e-8061.13PREDICTED: uncharacterized protein LOC103490099 [Cucumis melo][more]
gi|823241747|ref|XP_012453556.1|4.7e-7983.42PREDICTED: uncharacterized protein LOC105775599 [Gossypium raimondii][more]
gi|1012334254|gb|KYP45621.1|1.4e-7860.84Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G012730.1CmoCh16G012730.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 142..183
score: 4.8
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 4..163
score: 1.2E-36coord: 184..265
score: 1.2
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 184..265
score: 1.2E-36coord: 4..163
score: 1.2
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 3..93
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G012730Cucurbita pepo (Zucchini)cmocpeB308
CmoCh16G012730Cucurbita pepo (Zucchini)cmocpeB327
CmoCh16G012730Bottle gourd (USVL1VR-Ls)cmolsiB313
CmoCh16G012730Cucumber (Gy14) v2cgybcmoB310
CmoCh16G012730Melon (DHL92) v3.6.1cmomedB329
CmoCh16G012730Silver-seed gourdcarcmoB0581
CmoCh16G012730Silver-seed gourdcarcmoB0932
CmoCh16G012730Cucumber (Chinese Long) v3cmocucB0377
CmoCh16G012730Watermelon (97103) v2cmowmbB320
CmoCh16G012730Wax gourdcmowgoB0447
CmoCh16G012730Cucurbita moschata (Rifu)cmocmoB293
CmoCh16G012730Cucumber (Gy14) v1cgycmoB0885
CmoCh16G012730Cucurbita maxima (Rimu)cmacmoB323
CmoCh16G012730Cucurbita maxima (Rimu)cmacmoB807
CmoCh16G012730Wild cucumber (PI 183967)cmocpiB323
CmoCh16G012730Cucumber (Chinese Long) v2cmocuB316
CmoCh16G012730Melon (DHL92) v3.5.1cmomeB284
CmoCh16G012730Watermelon (Charleston Gray)cmowcgB276
CmoCh16G012730Watermelon (97103) v1cmowmB285