CmoCh16G011600 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G011600
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Photosystem II D2 protein
Location	Cmo_Chr16 : 8266427 .. 8267050 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCTGGCGATCTCTTCTGAGTCCTTCAAAACTGAAGCTCAGAAGCTAAGTTTTAGCTCATCTTTTATATATAACTCAATTCTGTGATGTTTTCTTTATGTAATTTGTGTATGTAAAATTATTAATATTTATTGAACAAACACCTAATAACATATTATTTTATACACCACCTAACAACCATTAAAAAAAATTAAGCAATTTCTCGATTACATTTCTTTATGTTATTTGTACTCGTGATTGGTTTATGGTGTTCTTGGAGTAGTTGGCCTGGTCCTAAACCTACGTGCCTATGACTTCATTTCTCAGAAAATCCGTGTGGCGGAAGATCCTGAATTTGAGATTTTCTATACCAAAAATATTCTCTTAAATGAAGGGATTCGTGCTTGGATGGTAGCTCAAGATCAGCCTCATGAAAACCTTATATTTCCTGATGAGGTTCTACCAGTGGAAACGCTCTTTAATGAAACTTTAGCTTTAGTTGGTCGTGACCAAGAAATCACTGATTTCGCTTGGTGGGCTGCGAATGCCCGACTTACCAATTTATCCGGTAAACTACTGGGGGCTCATTTAGCCAATGCCGGATTAATCGTATTTTGGGTCAGAGCATATATATATATATAA

mRNA sequence

ATGTTGCTGGCGATCTCTTCTGAGTCCTTCAAAACTGAAGCTCAGAAGCTAATTGGCCTGGTCCTAAACCTACGTGCCTATGACTTCATTTCTCAGAAAATCCGTGTGGCGGAAGATCCTGAATTTGAGATTTTCTATACCAAAAATATTCTCTTAAATGAAGGGATTCGTGCTTGGATGGTAGCTCAAGATCAGCCTCATGAAAACCTTATATTTCCTGATGAGGTTCTACCAGTGGAAACGCTCTTTAATGAAACTTTAGCTTTAGTTGGTCGTGACCAAGAAATCACTGATTTCGCTTGGTGGGCTGCGAATGCCCGACTTACCAATTTATCCGGTAAACTACTGGGGGCTCATTTAGCCAATGCCGGATTAATCGTATTTTGGGTCAGAGCATATATATATATATAA

Coding sequence (CDS)

ATGTTGCTGGCGATCTCTTCTGAGTCCTTCAAAACTGAAGCTCAGAAGCTAATTGGCCTGGTCCTAAACCTACGTGCCTATGACTTCATTTCTCAGAAAATCCGTGTGGCGGAAGATCCTGAATTTGAGATTTTCTATACCAAAAATATTCTCTTAAATGAAGGGATTCGTGCTTGGATGGTAGCTCAAGATCAGCCTCATGAAAACCTTATATTTCCTGATGAGGTTCTACCAGTGGAAACGCTCTTTAATGAAACTTTAGCTTTAGTTGGTCGTGACCAAGAAATCACTGATTTCGCTTGGTGGGCTGCGAATGCCCGACTTACCAATTTATCCGGTAAACTACTGGGGGCTCATTTAGCCAATGCCGGATTAATCGTATTTTGGGTCAGAGCATATATATATATATAA

Homology

[Close]

BLAST of CmoCh16G011600 vs. Swiss-Prot
Match: PSBD_ANTMA (Photosystem II D2 protein OS=Antirrhinum majus GN=psbD PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.9e-26
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 17  LIGLVLNLRAYDFISQKIRVAEDPEFEIFYTKNILLNEGIRAWMVAQDQPHENLIFPDEV 76
           ++GL LNLRAYDF+SQ+IR AEDPEFE FYTKNILLNEGIRAWM AQDQPHENLIFP+EV
Sbjct: 287 VVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEV 346

Query: 77  LP 79
           LP
Sbjct: 347 LP 348

[Close]

BLAST of CmoCh16G011600 vs. Swiss-Prot
Match: PSBD_SECCE (Photosystem II D2 protein OS=Secale cereale GN=psbD PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.9e-26
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 17  LIGLVLNLRAYDFISQKIRVAEDPEFEIFYTKNILLNEGIRAWMVAQDQPHENLIFPDEV 76
           ++GL LNLRAYDF+SQ+IR AEDPEFE FYTKNILLNEGIRAWM AQDQPHENLIFP+EV
Sbjct: 287 VVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEV 346

Query: 77  LP 79
           LP
Sbjct: 347 LP 348

[Close]

BLAST of CmoCh16G011600 vs. Swiss-Prot
Match: PSBD_ACOAM (Photosystem II D2 protein OS=Acorus americanus GN=psbD PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.9e-26
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 17  LIGLVLNLRAYDFISQKIRVAEDPEFEIFYTKNILLNEGIRAWMVAQDQPHENLIFPDEV 76
           ++GL LNLRAYDF+SQ+IR AEDPEFE FYTKNILLNEGIRAWM AQDQPHENLIFP+EV
Sbjct: 287 VVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEV 346

Query: 77  LP 79
           LP
Sbjct: 347 LP 348

[Close]

BLAST of CmoCh16G011600 vs. Swiss-Prot
Match: PSBD_WHEAT (Photosystem II D2 protein OS=Triticum aestivum GN=psbD PE=3 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 8.9e-26
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 17  LIGLVLNLRAYDFISQKIRVAEDPEFEIFYTKNILLNEGIRAWMVAQDQPHENLIFPDEV 76
           ++GL LNLRAYDF+SQ+IR AEDPEFE FYTKNILLNEGIRAWM AQDQPHENLIFP+EV
Sbjct: 287 VVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEV 346

Query: 77  LP 79
           LP
Sbjct: 347 LP 348

[Close]

BLAST of CmoCh16G011600 vs. Swiss-Prot
Match: PSBD_WELMI (Photosystem II D2 protein OS=Welwitschia mirabilis GN=psbD PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.9e-26
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 17  LIGLVLNLRAYDFISQKIRVAEDPEFEIFYTKNILLNEGIRAWMVAQDQPHENLIFPDEV 76
           ++GL LNLRAYDF+SQ+IR AEDPEFE FYTKNILLNEGIRAWM AQDQPHENLIFP+EV
Sbjct: 287 VVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEV 346

Query: 77  LP 79
           LP
Sbjct: 347 LP 348

[Close]

BLAST of CmoCh16G011600 vs. TrEMBL
Match: A0A0E0D3W6_9ORYZ (Photosystem II D2 protein OS=Oryza meridionalis PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.7e-42
Identity = 87/116 (75.00%), Postives = 94/116 (81.03%), Query Frame = 1


Query: 17  LIGLVLNLRAYDFISQKIRVAEDPEFEIFYTKNILLNEGIRAWMVAQDQPHENLIFPDEV 76
           ++GL LNLRAYDF+SQ+IR AEDPEFE FYTKNILLNEGIRAWM AQDQPHENLIFP+EV
Sbjct: 287 VVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEV 346

Query: 77  LPVETLFNETLALVGRDQEITDFAWWAANARLTNLSGKLLGAHLANAGLIVFWVRA 133
           LP            GRDQE T FAWWA NARL NLSGKLLGAH+A+AGLIVFW  A
Sbjct: 347 LPP-----------GRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGA 391

[Close]

BLAST of CmoCh16G011600 vs. TrEMBL
Match: A0A072TKG2_MEDTR (Photosystem II D2 protein OS=Medicago truncatula GN=MTR_0002s0420 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.7e-42
Identity = 87/116 (75.00%), Postives = 94/116 (81.03%), Query Frame = 1


Query: 17  LIGLVLNLRAYDFISQKIRVAEDPEFEIFYTKNILLNEGIRAWMVAQDQPHENLIFPDEV 76
           ++GL LNLRAYDF+SQ+IR AEDPEFE FYTKNILLNEGIRAWM AQDQPHENLIFP+EV
Sbjct: 287 VVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEV 346

Query: 77  LPVETLFNETLALVGRDQEITDFAWWAANARLTNLSGKLLGAHLANAGLIVFWVRA 133
           LP            GRDQE T FAWWA NARL NLSGKLLGAH+A+AGLIVFW  A
Sbjct: 347 LPP-----------GRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGA 391

[Close]

BLAST of CmoCh16G011600 vs. TrEMBL
Match: A0A0E0NEA4_ORYRU (Photosystem II D2 protein OS=Oryza rufipogon PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.7e-39
Identity = 83/116 (71.55%), Postives = 91/116 (78.45%), Query Frame = 1


Query: 17  LIGLVLNLRAYDFISQKIRVAEDPEFEIFYTKNILLNEGIRAWMVAQDQPHENLIFPDEV 76
           ++GL LNL AYDF+SQ+IR AEDPEFE FYTKNILLN+GIRAWM AQDQPHENLIFP+EV
Sbjct: 287 VVGLALNLLAYDFVSQEIRAAEDPEFETFYTKNILLNKGIRAWMAAQDQPHENLIFPEEV 346

Query: 77  LPVETLFNETLALVGRDQEITDFAWWAANARLTNLSGKLLGAHLANAGLIVFWVRA 133
            P            G DQE T FAWWA NARL NLSGKLLGAH+A+AGLIVFW  A
Sbjct: 347 QPP-----------GHDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGA 391

[Close]

BLAST of CmoCh16G011600 vs. TrEMBL
Match: A0A0V0IZL1_SOLCH (Photosystem II D2 protein OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.9e-39
Identity = 84/117 (71.79%), Postives = 91/117 (77.78%), Query Frame = 1


Query: 17  LIGLVLNLRAYDFISQKIRVAEDPEFEIFYTKNILLNEGIRAWMVAQDQPHENLIFPDEV 76
           ++GL LNLRAYDF+SQ+IR AEDPEFE FYTKNILLNEGIRAWM AQDQPHENLIFP+EV
Sbjct: 288 VVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEV 347

Query: 77  LP-VETLFNETLALVGRDQEITDFAWWAANARLTNLSGKLLGAHLANAGLIVFWVRA 133
           LP    L            E T FAWWA NARL NLSGKLLGAH+A+AGLIVFW  A
Sbjct: 348 LPRGNALXWXXXXXXXXXXETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGA 404

[Close]

BLAST of CmoCh16G011600 vs. TrEMBL
Match: B9RU80_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1634220 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.4e-32
Identity = 71/114 (62.28%), Postives = 81/114 (71.05%), Query Frame = 1


Query: 2   LLAISSESFKTEAQKLIGLVLNLRAYDFISQKIRVAEDPEFEIFYTKNILLNEGIRAWMV 61
           +L +        A +++GL  NLRAYDF+SQ+IR+AED EFE FYTKNILLNEGIRAWM 
Sbjct: 73  MLFVPVTGLSMSALRVVGLAPNLRAYDFVSQEIRIAEDLEFETFYTKNILLNEGIRAWMG 132

Query: 62  AQDQPHENLIFPDEVLPVETLFNETLALVGRDQEITDFAWWAANARLTNLSGKL 116
            QDQPHENL+F      VE LFN TL+L   DQE T FAWWA NARL NL G L
Sbjct: 133 TQDQPHENLVFLRRFYHVEMLFNGTLSLADHDQETTSFAWWARNARLINLFGTL 186

[Close]

BLAST of CmoCh16G011600 vs. TAIR10
Match: ATCG00270.1 (ATCG00270.1 photosystem II reaction center protein D)

HSP 1 Score: 117.9 bits (294), Expect = 5.0e-27
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 17  LIGLVLNLRAYDFISQKIRVAEDPEFEIFYTKNILLNEGIRAWMVAQDQPHENLIFPDEV 76
           ++GL LNLRAYDF+SQ+IR AEDPEFE FYTKNILLNEGIRAWM AQDQPHENLIFP+EV
Sbjct: 287 VVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEV 346

Query: 77  LP 79
           LP
Sbjct: 347 LP 348

[Close]

BLAST of CmoCh16G011600 vs. TAIR10
Match: ATCG00280.1 (ATCG00280.1 photosystem II reaction center protein C)

HSP 1 Score: 92.0 bits (227), Expect = 2.9e-19
Identity = 44/54 (81.48%), Postives = 46/54 (85.19%), Query Frame = 1


Query: 79  VETLFNETLALVGRDQEITDFAWWAANARLTNLSGKLLGAHLANAGLIVFWVRA 133
           VETLFN TLAL GRDQE T FAWWA NARL NLSGKLLGAH+A+AGLIVFW  A
Sbjct: 13  VETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGA 66

[Close]

BLAST of CmoCh16G011600 vs. NCBI nr
Match: gi|1012112032|ref|XP_015960230.1| (PREDICTED: LOW QUALITY PROTEIN: photosystem II CP43 reaction center protein-like [Arachis duranensis])

HSP 1 Score: 196.4 bits (498), Expect = 3.1e-47
Identity = 93/116 (80.17%), Postives = 101/116 (87.07%), Query Frame = 1


Query: 17  LIGLVLNLRAYDFISQKIRVAEDPEFEIFYTKNILLNEGIRAWMVAQDQPHENLIFPDEV 76
           ++GL LNLRA+DF+SQ+IR AEDPEFE FYTKNILLNEGIRAWM AQDQPHENLIFP+EV
Sbjct: 287 VVGLALNLRAFDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEV 346

Query: 77  LPVETLFNETLALVGRDQEITDFAWWAANARLTNLSGKLLGAHLANAGLIVFWVRA 133
           LP   LFN TLAL GRDQE T FAWWA NARL NLSGKLLGAH+A+AGLIVFW  A
Sbjct: 347 LPRGNLFNGTLALTGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGA 402

[Close]

BLAST of CmoCh16G011600 vs. NCBI nr
Match: gi|922328577|ref|XP_013443681.1| (photosystem II CP43 chlorophyll apoprotein [Medicago truncatula])

HSP 1 Score: 178.7 bits (452), Expect = 6.8e-42
Identity = 87/116 (75.00%), Postives = 94/116 (81.03%), Query Frame = 1


Query: 17  LIGLVLNLRAYDFISQKIRVAEDPEFEIFYTKNILLNEGIRAWMVAQDQPHENLIFPDEV 76
           ++GL LNLRAYDF+SQ+IR AEDPEFE FYTKNILLNEGIRAWM AQDQPHENLIFP+EV
Sbjct: 287 VVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEV 346

Query: 77  LPVETLFNETLALVGRDQEITDFAWWAANARLTNLSGKLLGAHLANAGLIVFWVRA 133
           LP            GRDQE T FAWWA NARL NLSGKLLGAH+A+AGLIVFW  A
Sbjct: 347 LPP-----------GRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGA 391

[Close]

BLAST of CmoCh16G011600 vs. NCBI nr
Match: gi|308742593|gb|ADO33444.1| (photosystem II CP43 chlorophyll apoprotein (plastid) [Smilax china])

HSP 1 Score: 176.8 bits (447), Expect = 2.6e-41
Identity = 84/103 (81.55%), Postives = 89/103 (86.41%), Query Frame = 1


Query: 30  ISQKIRVAEDPEFEIFYTKNILLNEGIRAWMVAQDQPHENLIFPDEVLPVETLFNETLAL 89
           +SQ+IR AEDPEFE FYTKNILLNEGIRAWM AQDQPHENLIFP+EVLP   LFN TLAL
Sbjct: 4   VSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNLFNGTLAL 63

Query: 90  VGRDQEITDFAWWAANARLTNLSGKLLGAHLANAGLIVFWVRA 133
            GRDQE T FAWWA NARL NLSGKLLGAH+A+AGLIVFW  A
Sbjct: 64  AGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGA 106

[Close]

BLAST of CmoCh16G011600 vs. NCBI nr
Match: gi|223543562|gb|EEF45092.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 145.6 bits (366), Expect = 6.4e-32
Identity = 71/114 (62.28%), Postives = 81/114 (71.05%), Query Frame = 1


Query: 2   LLAISSESFKTEAQKLIGLVLNLRAYDFISQKIRVAEDPEFEIFYTKNILLNEGIRAWMV 61
           +L +        A +++GL  NLRAYDF+SQ+IR+AED EFE FYTKNILLNEGIRAWM 
Sbjct: 73  MLFVPVTGLSMSALRVVGLAPNLRAYDFVSQEIRIAEDLEFETFYTKNILLNEGIRAWMG 132

Query: 62  AQDQPHENLIFPDEVLPVETLFNETLALVGRDQEITDFAWWAANARLTNLSGKL 116
            QDQPHENL+F      VE LFN TL+L   DQE T FAWWA NARL NL G L
Sbjct: 133 TQDQPHENLVFLRRFYHVEMLFNGTLSLADHDQETTSFAWWARNARLINLFGTL 186

[Close]

BLAST of CmoCh16G011600 vs. NCBI nr
Match: gi|944221278|gb|KQK85731.1| (hypothetical protein SETIT_020853mg [Setaria italica])

HSP 1 Score: 135.2 bits (339), Expect = 8.6e-29
Identity = 67/97 (69.07%), Postives = 72/97 (74.23%), Query Frame = 1


Query: 17  LIGLVLNLRAYDFISQKIRVAEDPEFEIFYTKNILLNEGIRAWMVAQDQPHENLIFPDEV 76
           ++GL LNLRAYDF+SQ+IR AEDPEFE FYTKNILLNEGIRAWM AQ    + L      
Sbjct: 254 VVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQISLMKILYSLRRF 313

Query: 77  LPVETLFNETLALVGRDQEITDFAWWAANARLTNLSG 114
             VETLFN T  L GRDQE T FAWWA NARL NLSG
Sbjct: 314 YHVETLFNGTFVLAGRDQETTGFAWWAGNARLINLSG 350

The following BLAST results are available for this feature:

BLAST of CmoCh16G011600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSBD_ANTMA	8.9e-26	85.48	Photosystem II D2 protein OS=Antirrhinum majus GN=psbD PE=1 SV=1	[more]
PSBD_SECCE	8.9e-26	85.48	Photosystem II D2 protein OS=Secale cereale GN=psbD PE=1 SV=1	[more]
PSBD_ACOAM	8.9e-26	85.48	Photosystem II D2 protein OS=Acorus americanus GN=psbD PE=3 SV=1	[more]
PSBD_WHEAT	8.9e-26	85.48	Photosystem II D2 protein OS=Triticum aestivum GN=psbD PE=3 SV=2	[more]
PSBD_WELMI	8.9e-26	85.48	Photosystem II D2 protein OS=Welwitschia mirabilis GN=psbD PE=3 SV=1	[more]

BLAST of CmoCh16G011600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0E0D3W6_9ORYZ	4.7e-42	75.00	Photosystem II D2 protein OS=Oryza meridionalis PE=3 SV=1	[more]
A0A072TKG2_MEDTR	4.7e-42	75.00	Photosystem II D2 protein OS=Medicago truncatula GN=MTR_0002s0420 PE=3 SV=1	[more]
A0A0E0NEA4_ORYRU	1.7e-39	71.55	Photosystem II D2 protein OS=Oryza rufipogon PE=3 SV=1	[more]
A0A0V0IZL1_SOLCH	2.9e-39	71.79	Photosystem II D2 protein OS=Solanum chacoense PE=3 SV=1	[more]
B9RU80_RICCO	4.4e-32	62.28	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1634220 PE=4 SV=1	[more]

BLAST of CmoCh16G011600 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00270.1	5.0e-27	85.48	ATCG00270.1 photosystem II reaction center protein D	[more]
ATCG00280.1	2.9e-19	81.48	ATCG00280.1 photosystem II reaction center protein C	[more]

BLAST of CmoCh16G011600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012112032\|ref\|XP_015960230.1\|	3.1e-47	80.17	PREDICTED: LOW QUALITY PROTEIN: photosystem II CP43 reaction center protein-like...	[more]
gi\|922328577\|ref\|XP_013443681.1\|	6.8e-42	75.00	photosystem II CP43 chlorophyll apoprotein [Medicago truncatula]	[more]
gi\|308742593\|gb\|ADO33444.1\|	2.6e-41	81.55	photosystem II CP43 chlorophyll apoprotein (plastid) [Smilax china]	[more]
gi\|223543562\|gb\|EEF45092.1\|	6.4e-32	62.28	conserved hypothetical protein [Ricinus communis]	[more]
gi\|944221278\|gb\|KQK85731.1\|	8.6e-29	69.07	hypothetical protein SETIT_020853mg [Setaria italica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000484	Photo_RC_L/M
IPR000932	PS_antenna-like

Vocabulary: **Biological Process**
Term	Definition
GO:0019684	photosynthesis, light reaction
GO:0009772	photosynthetic electron transport in photosystem II
GO:0009767	photosynthetic electron transport chain

Vocabulary: **Molecular Function**
Term	Definition
GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0016168	chlorophyll binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009521	photosystem
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009521	photosystem
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G011600.1	CmoCh16G011600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000484	Photosynthetic reaction centre, L/M	unknown	SSF81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 17..80 score: 1.19
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 98..131 score: 2.
IPR000932	Photosystem antenna protein-like	unknown	SSF161077	Photosystem II antenna protein-like	coord: 97..133 score: 1.02
None	No IPR available	PANTHER	PTHR33149	FAMILY NOT NAMED	coord: 17..94 score: 2.4
None	No IPR available	PANTHER	PTHR33149:SF2	SUBFAMILY NOT NAMED	coord: 17..94 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G011600	Cucumber (Chinese Long) v3	cmocucB0371
CmoCh16G011600	Cucumber (Chinese Long) v3	cmocucB0376
CmoCh16G011600	Watermelon (97103) v2	cmowmbB341
CmoCh16G011600	Watermelon (97103) v2	cmowmbB315
CmoCh16G011600	Wax gourd	cmowgoB0415
CmoCh16G011600	Cucurbita moschata (Rifu)	cmocmoB282
CmoCh16G011600	Cucurbita moschata (Rifu)	cmocmoB294
CmoCh16G011600	Cucumber (Gy14) v1	cgycmoB0860
CmoCh16G011600	Cucumber (Gy14) v1	cgycmoB0887
CmoCh16G011600	Cucurbita maxima (Rimu)	cmacmoB323
CmoCh16G011600	Cucurbita maxima (Rimu)	cmacmoB503
CmoCh16G011600	Cucurbita maxima (Rimu)	cmacmoB588
CmoCh16G011600	Cucurbita maxima (Rimu)	cmacmoB806
CmoCh16G011600	Wild cucumber (PI 183967)	cmocpiB316
CmoCh16G011600	Wild cucumber (PI 183967)	cmocpiB321
CmoCh16G011600	Cucumber (Chinese Long) v2	cmocuB308
CmoCh16G011600	Cucumber (Chinese Long) v2	cmocuB313
CmoCh16G011600	Melon (DHL92) v3.5.1	cmomeB282
CmoCh16G011600	Melon (DHL92) v3.5.1	cmomeB291
CmoCh16G011600	Watermelon (Charleston Gray)	cmowcgB270
CmoCh16G011600	Watermelon (Charleston Gray)	cmowcgB272
CmoCh16G011600	Watermelon (97103) v1	cmowmB283
CmoCh16G011600	Watermelon (97103) v1	cmowmB288
CmoCh16G011600	Cucurbita pepo (Zucchini)	cmocpeB308
CmoCh16G011600	Cucurbita pepo (Zucchini)	cmocpeB323
CmoCh16G011600	Cucurbita pepo (Zucchini)	cmocpeB328
CmoCh16G011600	Bottle gourd (USVL1VR-Ls)	cmolsiB309
CmoCh16G011600	Bottle gourd (USVL1VR-Ls)	cmolsiB311
CmoCh16G011600	Cucumber (Gy14) v2	cgybcmoB302
CmoCh16G011600	Cucumber (Gy14) v2	cgybcmoB306
CmoCh16G011600	Melon (DHL92) v3.6.1	cmomedB320
CmoCh16G011600	Melon (DHL92) v3.6.1	cmomedB321
CmoCh16G011600	Silver-seed gourd	carcmoB0766
CmoCh16G011600	Silver-seed gourd	carcmoB0961
CmoCh16G011600	Silver-seed gourd	carcmoB1051