CmoCh16G011520 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G011520
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Location	Cmo_Chr16 : 8223666 .. 8224597 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGCATGGGCATGGGCATGGGCATGAGGCGTTGGGGCTTGGTGCTGGCGGTGGTGATGGCGGTGGCAGTAGGGGAGGTGGCGGCGCTGACGGCGGCGCAGTGTAAGGCGGAGAGAGATATGGCGGTGAAAGAGTGCCTGGCGGTGGTGTTCGGGAGGAACCCGTCGCCGGCGTGCTGCCAGAGGGCGAGAGTGAGCCATACGGAGTGTATTTGCCCGGCTGTTACGCCTAAGCTGATGACATACGTGGACCCTAATCGCGCCATTCGCCTCATCGAAGGCTGCGGCCGTAAGGTCCCCCGCCATTTCAAATGTGGAAGTAATTAACCTCTCTCTCTCTCTCTCTCTCTCTCTAAATTCGACAGATTAATTTTTAAAAAATAAAATTATTAAGTTTATTTAAAAAACGAACTTGCTTTTTATTTCAAAAATACCCTTACTATTTTAAAAGACAATATTACCCTCCACATTTCGTAAACGTCTTACCTCTAGTAAAATTTTTTAGAATCTCGAATGAAAAATTAGAAGCCGACCTCAATTCATGAATTTAAATAAATCATCCAAAAGTATTAAACAAATAATAATAATAATAATAATAATAAAATAGTTGTTAAATATTTTAAAAATAGCCTAAATATAAATTTTGTAAATTGCCCATGAAATAATTTCAGTATATTACAATTACAAATTTATTAATATATTATTTATATACGTAAAATAATAATATTATTATTTTTGGCCAATTTTATTTAATTTTTAATAAGATGGTTATATATATATATATATATATATATATACACACATACATATACATATATTATATAATGTTTGTAATGCAGGCTATACTACTCCATGAAAGCTATCATTGGGAATATCCAAGCAAGCCTGAAGATTAAAGAAGAAGATGATATAGAGAGTGAACTAAGTGA

mRNA sequence

ATGGTGGGCATGGGCATGGGCATGGGCATGAGGCGTTGGGGCTTGGTGCTGGCGGTGGTGATGGCGGTGGCAGTAGGGGAGGTGGCGGCGCTGACGGCGGCGCAGTGTAAGGCGGAGAGAGATATGGCGGTGAAAGAGTGCCTGGCGGTGGTGTTCGGGAGGAACCCGTCGCCGGCGTGCTGCCAGAGGGCGAGAGTGAGCCATACGGAGTGTATTTGCCCGGCTGTTACGCCTAAGCTGATGACATACGTGGACCCTAATCGCGCCATTCGCCTCATCGAAGGCTGCGGCCGTAAGGTCCCCCGCCATTTCAAATGTGGAAGCTATACTACTCCATGAAAGCTATCATTGGGAATATCCAAGCAAGCCTGAAGATTAAAGAAGAAGATGATATAGAGAGTGAACTAAGTGA

Coding sequence (CDS)

ATGGTGGGCATGGGCATGGGCATGGGCATGAGGCGTTGGGGCTTGGTGCTGGCGGTGGTGATGGCGGTGGCAGTAGGGGAGGTGGCGGCGCTGACGGCGGCGCAGTGTAAGGCGGAGAGAGATATGGCGGTGAAAGAGTGCCTGGCGGTGGTGTTCGGGAGGAACCCGTCGCCGGCGTGCTGCCAGAGGGCGAGAGTGAGCCATACGGAGTGTATTTGCCCGGCTGTTACGCCTAAGCTGATGACATACGTGGACCCTAATCGCGCCATTCGCCTCATCGAAGGCTGCGGCCGTAAGGTCCCCCGCCATTTCAAATGTGGAAGCTATACTACTCCATGA

Homology

[Close]

BLAST of CmoCh16G011520 vs. TrEMBL
Match: A0A0A0L677_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073790 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 7.9e-43
Identity = 92/114 (80.70%), Postives = 101/114 (88.60%), Query Frame = 1


Query: 1   MVGMGMGMGMRRWGLVLAVV--MAVAVGEVAALTAAQCKAERDMAVKECLAVVFGRNPSP 60
           MVG+   + M RWGLV+AVV  MA+AVGEVAALTAA+C+AERDMAV  C +V+FGRNPSP
Sbjct: 1   MVGI---IKMGRWGLVMAVVAIMAMAVGEVAALTAAECQAERDMAVNACKSVLFGRNPSP 60

Query: 61  ACCQRARVSHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGSYTTP 113
           ACCQRARVSHT CICPAVTPKLMTYVDP RAIRLIE CGRKVPRHFKCGS+TTP
Sbjct: 61  ACCQRARVSHTVCICPAVTPKLMTYVDPIRAIRLIESCGRKVPRHFKCGSFTTP 111

[Close]

BLAST of CmoCh16G011520 vs. TrEMBL
Match: A0A0A0L5D3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017110 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.0e-42
Identity = 90/114 (78.95%), Postives = 100/114 (87.72%), Query Frame = 1


Query: 1   MVGMGMGMGMRRWGLVLAVV--MAVAVGEVAALTAAQCKAERDMAVKECLAVVFGRNPSP 60
           MVG+  G    RWGLV+ VV  MA+ VGEV ALTAA+CK ERDMAV+ECLAVVFGRNPSP
Sbjct: 1   MVGIREG----RWGLVMVVVAVMAMGVGEVMALTAAECKTERDMAVRECLAVVFGRNPSP 60

Query: 61  ACCQRARVSHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGSYTTP 113
           ACC+RARVSHTECIC AVTPKLMTYVDP+RAIRLI+ CGR+VPRHFKCGS+TTP
Sbjct: 61  ACCERARVSHTECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGSFTTP 110

[Close]

BLAST of CmoCh16G011520 vs. TrEMBL
Match: F6H7Y2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00060 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-29
Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 1


Query: 9   GMRRWG-LVLAVVMAVAVGEV----AALTAAQCKAERDMAVKECLAVVFGRNPSPACCQR 68
           G + WG +V+ VV+ + + EV    AA +AA+CK ER +A+  C  VV+G++PSPACC+R
Sbjct: 3   GGKSWGVMVVLVVLLLGMWEVKTGSAAPSAAECKEERRLAINACKPVVYGKDPSPACCER 62

Query: 69  ARVSHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGSYTTP 113
           ARV+H EC+CP +TPKL   +D NRA+RLIEGCGRKVPRH+KCGS TTP
Sbjct: 63  ARVTHIECVCPVITPKLAALIDVNRAVRLIEGCGRKVPRHYKCGSITTP 111

[Close]

BLAST of CmoCh16G011520 vs. TrEMBL
Match: F6H7X8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00020 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-29
Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 1


Query: 9   GMRRWG-LVLAVVMAVAVGEV----AALTAAQCKAERDMAVKECLAVVFGRNPSPACCQR 68
           G + WG +V+ VV+ + + EV    AA +AA+CK ER +A+  C  VV+G++PSPACC+R
Sbjct: 3   GGKSWGVMVVLVVLLLGMWEVKTGSAAPSAAECKEERRLAINACKPVVYGKDPSPACCER 62

Query: 69  ARVSHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGSYTTP 113
           ARV+H EC+CP +TPKL   +D NRA+RLIEGCGRKVPRH+KCGS TTP
Sbjct: 63  ARVTHIECVCPVITPKLAALIDVNRAVRLIEGCGRKVPRHYKCGSITTP 111

[Close]

BLAST of CmoCh16G011520 vs. TrEMBL
Match: V4VKY5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022946mg PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-29
Identity = 64/107 (59.81%), Postives = 77/107 (71.96%), Query Frame = 1


Query: 12  RWGLVLAVVMAVAVGEV------AALTAAQCKAERDMAVKECLAVVFGRNPSPACCQRAR 71
           RW LV  V   V + EV      A L+AAQCK ER + + EC  V++G+ PSP+CC+R R
Sbjct: 6   RWSLVFLVANVVGMWEVNMGASAAGLSAAQCKEERRIGLNECKPVLYGKLPSPSCCERVR 65

Query: 72  VSHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGSYTTP 113
           VSH EC+CP +TPKL   +D NRAIRLIEGCGR+VPRHFKCGS TTP
Sbjct: 66  VSHIECVCPVITPKLAALIDVNRAIRLIEGCGRRVPRHFKCGSITTP 112

[Close]

BLAST of CmoCh16G011520 vs. NCBI nr
Match: gi|659096493|ref|XP_008449126.1| (PREDICTED: uncharacterized protein LOC103491080 [Cucumis melo])

HSP 1 Score: 184.1 bits (466), Expect = 1.3e-43
Identity = 88/106 (83.02%), Postives = 97/106 (91.51%), Query Frame = 1


Query: 10  MRRWGLVLA---VVMAVAVGEVAALTAAQCKAERDMAVKECLAVVFGRNPSPACCQRARV 69
           M RWGLV+A   ++MA+AVGEVAALTAA+C+AERDMAV  C +V+FGRNPSPACCQRARV
Sbjct: 7   MGRWGLVMAVVAIIMAMAVGEVAALTAAECQAERDMAVNACKSVLFGRNPSPACCQRARV 66

Query: 70  SHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGSYTTP 113
           SHTECICPAVTPKLMTYVDP RAIRLIE CGRKVPRHFKCGS+TTP
Sbjct: 67  SHTECICPAVTPKLMTYVDPIRAIRLIESCGRKVPRHFKCGSFTTP 112

[Close]

BLAST of CmoCh16G011520 vs. NCBI nr
Match: gi|659095793|ref|XP_008448771.1| (PREDICTED: uncharacterized protein LOC103490836 [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 3.0e-43
Identity = 92/115 (80.00%), Postives = 101/115 (87.83%), Query Frame = 1


Query: 1   MVGMGMGMGMRRWGLVLAVVMAV---AVGEVAALTAAQCKAERDMAVKECLAVVFGRNPS 60
           MVG+  G    RWGLV+ VV+AV    VGEVAALTAA+CKAERDMAVK+CLAVVFGRNPS
Sbjct: 1   MVGIREG----RWGLVMGVVLAVMAMGVGEVAALTAAECKAERDMAVKKCLAVVFGRNPS 60

Query: 61  PACCQRARVSHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGSYTTP 113
           PACC+RARVSH ECICPAVT KLMTYVDP+RAIRLI+ CGR+VPRHFKCGSYTTP
Sbjct: 61  PACCERARVSHAECICPAVTSKLMTYVDPSRAIRLIQSCGRRVPRHFKCGSYTTP 111

[Close]

BLAST of CmoCh16G011520 vs. NCBI nr
Match: gi|778675994|ref|XP_011650514.1| (PREDICTED: uncharacterized protein LOC101222349 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 1.1e-42
Identity = 92/114 (80.70%), Postives = 101/114 (88.60%), Query Frame = 1


Query: 1   MVGMGMGMGMRRWGLVLAVV--MAVAVGEVAALTAAQCKAERDMAVKECLAVVFGRNPSP 60
           MVG+   + M RWGLV+AVV  MA+AVGEVAALTAA+C+AERDMAV  C +V+FGRNPSP
Sbjct: 1   MVGI---IKMGRWGLVMAVVAIMAMAVGEVAALTAAECQAERDMAVNACKSVLFGRNPSP 60

Query: 61  ACCQRARVSHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGSYTTP 113
           ACCQRARVSHT CICPAVTPKLMTYVDP RAIRLIE CGRKVPRHFKCGS+TTP
Sbjct: 61  ACCQRARVSHTVCICPAVTPKLMTYVDPIRAIRLIESCGRKVPRHFKCGSFTTP 111

[Close]

BLAST of CmoCh16G011520 vs. NCBI nr
Match: gi|449459012|ref|XP_004147240.1| (PREDICTED: uncharacterized protein LOC101207186 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.5e-42
Identity = 90/114 (78.95%), Postives = 100/114 (87.72%), Query Frame = 1


Query: 1   MVGMGMGMGMRRWGLVLAVV--MAVAVGEVAALTAAQCKAERDMAVKECLAVVFGRNPSP 60
           MVG+  G    RWGLV+ VV  MA+ VGEV ALTAA+CK ERDMAV+ECLAVVFGRNPSP
Sbjct: 1   MVGIREG----RWGLVMVVVAVMAMGVGEVMALTAAECKTERDMAVRECLAVVFGRNPSP 60

Query: 61  ACCQRARVSHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGSYTTP 113
           ACC+RARVSHTECIC AVTPKLMTYVDP+RAIRLI+ CGR+VPRHFKCGS+TTP
Sbjct: 61  ACCERARVSHTECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGSFTTP 110

[Close]

BLAST of CmoCh16G011520 vs. NCBI nr
Match: gi|731380357|ref|XP_010662612.1| (PREDICTED: uncharacterized protein LOC104882174 [Vitis vinifera])

HSP 1 Score: 137.5 bits (345), Expect = 1.4e-29
Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 1


Query: 9   GMRRWG-LVLAVVMAVAVGEV----AALTAAQCKAERDMAVKECLAVVFGRNPSPACCQR 68
           G + WG +V+ VV+ + + EV    AA +AA+CK ER +A+  C  VV+G++PSPACC+R
Sbjct: 3   GGKSWGVMVVLVVLLLGMWEVKTGSAAPSAAECKEERRLAINACKPVVYGKDPSPACCER 62

Query: 69  ARVSHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGSYTTP 113
           ARV+H EC+CP +TPKL   +D NRA+RLIEGCGRKVPRH+KCGS TTP
Sbjct: 63  ARVTHIECVCPVITPKLAALIDVNRAVRLIEGCGRKVPRHYKCGSITTP 111

The following BLAST results are available for this feature:

BLAST of CmoCh16G011520 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh16G011520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L677_CUCSA	7.9e-43	80.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073790 PE=4 SV=1	[more]
A0A0A0L5D3_CUCSA	1.0e-42	78.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017110 PE=4 SV=1	[more]
F6H7Y2_VITVI	1.0e-29	58.72	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00060 PE=4 SV=...	[more]
F6H7X8_VITVI	1.0e-29	58.72	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00020 PE=4 SV=...	[more]
V4VKY5_9ROSI	1.7e-29	59.81	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022946mg PE=4 SV=1	[more]

BLAST of CmoCh16G011520 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh16G011520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096493\|ref\|XP_008449126.1\|	1.3e-43	83.02	PREDICTED: uncharacterized protein LOC103491080 [Cucumis melo]	[more]
gi\|659095793\|ref\|XP_008448771.1\|	3.0e-43	80.00	PREDICTED: uncharacterized protein LOC103490836 [Cucumis melo]	[more]
gi\|778675994\|ref\|XP_011650514.1\|	1.1e-42	80.70	PREDICTED: uncharacterized protein LOC101222349 [Cucumis sativus]	[more]
gi\|449459012\|ref\|XP_004147240.1\|	1.5e-42	78.95	PREDICTED: uncharacterized protein LOC101207186 [Cucumis sativus]	[more]
gi\|731380357\|ref\|XP_010662612.1\|	1.4e-29	58.72	PREDICTED: uncharacterized protein LOC104882174 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G011520.1	CmoCh16G011520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 17..106 score: 1.6
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 45..102 score: 2.5
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 42..102 score: 2.
None	No IPR available	PANTHER	PTHR33286	FAMILY NOT NAMED	coord: 6..112 score: 2.2
None	No IPR available	PANTHER	PTHR33286:SF7	SUBFAMILY NOT NAMED	coord: 6..112 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G011520	Cucurbita moschata (Rifu)	cmocmoB282
CmoCh16G011520	Cucurbita moschata (Rifu)	cmocmoB294
CmoCh16G011520	Cucumber (Gy14) v1	cgycmoB0860
CmoCh16G011520	Cucumber (Gy14) v1	cgycmoB0887
CmoCh16G011520	Cucurbita maxima (Rimu)	cmacmoB323
CmoCh16G011520	Cucurbita maxima (Rimu)	cmacmoB503
CmoCh16G011520	Cucurbita maxima (Rimu)	cmacmoB588
CmoCh16G011520	Cucurbita maxima (Rimu)	cmacmoB806
CmoCh16G011520	Wild cucumber (PI 183967)	cmocpiB316
CmoCh16G011520	Wild cucumber (PI 183967)	cmocpiB321
CmoCh16G011520	Cucumber (Chinese Long) v2	cmocuB308
CmoCh16G011520	Cucumber (Chinese Long) v2	cmocuB313
CmoCh16G011520	Melon (DHL92) v3.5.1	cmomeB282
CmoCh16G011520	Melon (DHL92) v3.5.1	cmomeB291
CmoCh16G011520	Watermelon (Charleston Gray)	cmowcgB270
CmoCh16G011520	Watermelon (Charleston Gray)	cmowcgB272
CmoCh16G011520	Watermelon (97103) v1	cmowmB283
CmoCh16G011520	Cucurbita pepo (Zucchini)	cmocpeB308
CmoCh16G011520	Cucurbita pepo (Zucchini)	cmocpeB323
CmoCh16G011520	Cucurbita pepo (Zucchini)	cmocpeB328
CmoCh16G011520	Bottle gourd (USVL1VR-Ls)	cmolsiB309
CmoCh16G011520	Bottle gourd (USVL1VR-Ls)	cmolsiB311
CmoCh16G011520	Cucumber (Gy14) v2	cgybcmoB302
CmoCh16G011520	Cucumber (Gy14) v2	cgybcmoB306
CmoCh16G011520	Melon (DHL92) v3.6.1	cmomedB320
CmoCh16G011520	Melon (DHL92) v3.6.1	cmomedB321
CmoCh16G011520	Silver-seed gourd	carcmoB0766
CmoCh16G011520	Silver-seed gourd	carcmoB0961
CmoCh16G011520	Silver-seed gourd	carcmoB1051
CmoCh16G011520	Cucumber (Chinese Long) v3	cmocucB0371
CmoCh16G011520	Cucumber (Chinese Long) v3	cmocucB0376
CmoCh16G011520	Watermelon (97103) v2	cmowmbB341
CmoCh16G011520	Watermelon (97103) v2	cmowmbB315
CmoCh16G011520	Wax gourd	cmowgoB0415