CmoCh16G011330 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G011330
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRibulose bisphosphate carboxylase large chain
LocationCmo_Chr16 : 8078805 .. 8081509 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGGATTCGCGAAGAAAATTCCACGTTTCCCCGACTCGCAATTCGATTCCAATCGCCGGCGCGGCGTCTCAGCCCACGATTTCTTCAATCGAACACGAAATAAGCCGATTGCAAGACGTCGAAGAATGTGGATTGGGATGAATATGAATATATGTTTTTTTTTTTTTCTGGGAAAAATATCAGTAGATTCCCTAATATCATTTTAGCAGTTCTAGTTTATATATTTTTTGAAAAAAAAAAAAAAAAATCTTAAATTTGTTCATTAAAATTTGAAAATATTTCTTTTTATAAATATTATTATTGTTATGCAGATAATTTCAATAATAATTAAGTTTAGGGTAAAAACGAAAATTAAACCGGTCTTACATTACAAGATTATAGCTTAACATCCTGAATTTTAAACCCGTCTTAAACTGAGTACGAGAAGGACGCACCTTTGATGTATCAGTTATCATGCCCACAGTAAACGCGGGCAACATAACTGCTGAAAGCATCTAAGTAGTAAGTCCATCCCAAAATGAGTGCTCTAGTATTCTGACTTTCTAGCATAGCCGAGACAACGATAGGTTCTCTACTCTTACGAGATTGGAGCGACTGAAATTTTGAGAATTCAAGAGAATGTCACAGCAAGATTAGTCATTTATAGGTGTCAAGTGTAAGTGTAGTGACGTATGTAGCTATGGTATCCTAACCGACCGATAGACTTGAACATTGTTCCTACGTGACCCGATTAATTCGATTAAACACTCCCCGTCTATTTTCATTGTTCAACTTTTTTACCACACGAAAAAATAGTTGATTGTCTAACTCATATCATGCTAATTAAATTATGTTGGGTTGATTAGTTGTTTGAATCGTTGACACTCCTAACTATAACATGAAATCAGTAAAATTCGTCAACATCTCGACCTACAAATTAATTTTCCACCGATTATTTTATAGTAATAGATAAATATGGTCGTTGTCATTATTATTATTATTACTATTATTAAATATTTCCATTCCCACATAAATATTTATTTGAAAATAAGCATGTGACCATATTTATGACGTAATAAATGCTGGCTACAATAGGCCAATAGAAAGCCACTCTGATGTGTCCGATTCCTGGTACGTTTATTAGCTTTTTTTTTTTTTTTTTTCTAATAATTAAATTCTACAATTTTTAAAAAAAGAATTAGCAAATAATAAAATAAATAAATATACGTCTAAATTCAATTGAATTTAGTTATGATCCAATAAATGGTATAAATAAATACATATTCTTAAATATAGCCCGACATTTATTTATTTATTTAGTTGGATAATAAATTGGGTGTAAATATTCAACATAGTATGGCATAGGTACGTGTATTCATAGGTGGGGAGGGGATAGGAAAGTCTTCTCCATCCCCGTACCCGCCTCCAATTTTAATTTTTATATTTGCAAAACTTCTCATTTATTTTTGTGACGATCAGACTACAAGTTTTTTCCATCTTAGCTTTCATATATATATATATATATATATATATATATATATATGTATGTATATGTATGTATTGCTGNTGACGATCAGACTACAAGTTTTTTCCATCTTAGCTTTCATATATATATATATATATATATATATATATATATATATGTATGTATATGTATGTATTGCTGCTAGGCAAAGCGGTAGAGTGCTGCATCTTAGATGGCGAGAGTCTAGTAGCCAAAAACATCACTAGCTTATGCTCTGACCTGTGTAGCGTGAGGCACGTGGAATCCTATGTGAATCAACAAGGACCACCTTGTAAGGCTAAATACTCCTGGGTGACCGATAGTGAAGCAGTACTGTGAGGGAAAGGTGAAAAACCCCATCGAAAAGTGAAAATGGAACATGAAAACTATACGTTCCTAAACAATGGGAGGAGACCAAGACTCTGATTGCGTGCCTGTTGAAGAATGAATCGGGGATTCGTAGACAATGGCTTTGTTAAGAGACACATAGACAGTGGCTTGGTGGGACGAGGGCTGGAATTTGGGTAGGGTCGAGATGAGAGAATTTTCTTTCTACTCCCACGTAGATACTATATCCTATTTCAGAGCAATTTTTCTAAAACCTAAATTTTTGCCGATCATCAACTATAATTAATAATTATAAAGAAAAAAAAAGTGACGAAAGTAAGAAAAAATCGGAACAAGCTAAGTAAATAAAATTTATAGAACATATAACAAATTGATTAAATACTATTTTGTAATTAAAATTAATAACAGGAGTTTTAATTTTTCGGTTCTCGCCTAATCAATAGATCTCGACAAGAAATTCCTGTCGGTGGATTGAGATTGATATTTTTCGATTCAGATTTCAATCCACCATTTTTTCGTAGCTGTAAAGTTTTATTTTCGTTTCATATTTTAATGCATCGCTCTCACTGATCCAACAATCCCACTGTCGAGCACAAACTCTCTCTCTTCAGCTCAGTGGGAGCAAATCTGAAATCTTGCCGGAGCGTTGCTGGAGGTACGTTTTTTGAAGTAATTGTCATTTGGCTGTGAAGTTTCTAGATCCTTAGCACTTTGGCAAGTTCAAGTTCATCGATCGATTAGATCCTAGTTACTGCCTTGTATTTCTTTAATTCTTCCCGATGCGTTCGTTTGAGCATCGTATTTTCTGCTTCATTTTACAGATTTCTTACTGGATTTGTATTTTTCCCCATTCTGATGATCTTTGGTTAA

mRNA sequence

ATGGGGGGATTCGCGAAGAAAATTCCACGTTTCCCCGACTCGCAATTCGATTCCAATCGCCGGCGCGGCGTCTCAGCCCACGATTTCTTCAATCGAACACGAAATAAGCCGATTGCAAGACGTCGAAGAATGTGGATTGGGATGAATATGAATATATGCAAAGCGGTAGAGTGCTGCATCTTAGATGGCGAGAGTCTAGTAGCCAAAAACATCACTAGCTTATGCTCTGACCTGTGTAGCGTGAGGCACGTGGAATCCTATGTGAATCAACAAGGACCACCTTGTAAGGCTAAATACTCCTGGGTGACCGATAGTGAAGCAGTACTTTTTATTTTCGTTTCATATTTTAATGCATCGCTCTCACTGATCCAACAATCCCACTGTCGAGCACAAACTCTCTCTCTTCAGCTCAGTGGGAGCAAATCTGAAATCTTGCCGGAGCGTTGCTGGAGATTTCTTACTGGATTTGTATTTTTCCCCATTCTGATGATCTTTGGTTAA

Coding sequence (CDS)

ATGGGGGGATTCGCGAAGAAAATTCCACGTTTCCCCGACTCGCAATTCGATTCCAATCGCCGGCGCGGCGTCTCAGCCCACGATTTCTTCAATCGAACACGAAATAAGCCGATTGCAAGACGTCGAAGAATGTGGATTGGGATGAATATGAATATATGCAAAGCGGTAGAGTGCTGCATCTTAGATGGCGAGAGTCTAGTAGCCAAAAACATCACTAGCTTATGCTCTGACCTGTGTAGCGTGAGGCACGTGGAATCCTATGTGAATCAACAAGGACCACCTTGTAAGGCTAAATACTCCTGGGTGACCGATAGTGAAGCAGTACTTTTTATTTTCGTTTCATATTTTAATGCATCGCTCTCACTGATCCAACAATCCCACTGTCGAGCACAAACTCTCTCTCTTCAGCTCAGTGGGAGCAAATCTGAAATCTTGCCGGAGCGTTGCTGGAGATTTCTTACTGGATTTGTATTTTTCCCCATTCTGATGATCTTTGGTTAA
Homology
[Close]
BLAST of CmoCh16G011330 vs. TrEMBL
Match: W9SL82_9ROSA (Ribulose bisphosphate carboxylase large chain OS=Morus notabilis GN=L484_000836 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-15
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 1 

Query: 50  MNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEAV 109
           M + + VECC LDGES VA++ITSL SDL S+ HVES VNQQGPPCKAKYSWVTDSE V
Sbjct: 11  MLLGEVVECCTLDGESPVAESITSLRSDLSSMGHVESRVNQQGPPCKAKYSWVTDSEVV 69

[Close]
BLAST of CmoCh16G011330 vs. TrEMBL
Match: A0A170QM36_9MICO (Uncharacterized protein (Fragment) OS=Microbacterium sp. HM58-2 GN=MHM582_3608 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.6e-15
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 1 

Query: 54  KAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEAV 109
           +AVEC  LDGES VA++ITSLCSD  S+ HVES VNQQGPPCKAKYSWVTDSE V
Sbjct: 14  EAVECRTLDGESPVAESITSLCSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVV 68

[Close]
BLAST of CmoCh16G011330 vs. TrEMBL
Match: A0A078G6E9_BRANA (BnaC09g16510D protein OS=Brassica napus GN=BnaC09g30110D PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.6e-15
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 1 

Query: 54  KAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEAV 109
           +AVEC  LDGES VA++ITSLCSD  S+ HVES VNQQGPPCKAKYSWVTDSE V
Sbjct: 23  EAVECRTLDGESPVAESITSLCSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVV 77

[Close]
BLAST of CmoCh16G011330 vs. TrEMBL
Match: A6H5B3_VIGUN (Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata GN=rrn23 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 45/72 (62.50%), Postives = 52/72 (72.22%), Query Frame = 1 

Query: 42  RRMWIGMNMNICKA-----VECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCK 101
           R  + G  +  C+A     +ECC LDGES VA++ITSL SD  S+ HVES VNQQGPPCK
Sbjct: 4   RPRYAGGELYKCRAARRSNIECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCK 63

Query: 102 AKYSWVTDSEAV 109
           AKYSWVTDSE V
Sbjct: 64  AKYSWVTDSEVV 75

[Close]
BLAST of CmoCh16G011330 vs. TrEMBL
Match: V7CP58_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G203700g PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 1 

Query: 55  AVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEAV 109
           ++ECC LDGES VA++ITSL SD  S+ HVES VNQQGPPCKAKYSWVTDSE V
Sbjct: 33  SIECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVV 86

[Close]
BLAST of CmoCh16G011330 vs. NCBI nr
Match: gi|703069111|ref|XP_010088417.1| (Ribulose bisphosphate carboxylase large chain [Morus notabilis])

HSP 1 Score: 90.5 bits (223), Expect = 3.0e-15
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 1 

Query: 50  MNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEAV 109
           M + + VECC LDGES VA++ITSL SDL S+ HVES VNQQGPPCKAKYSWVTDSE V
Sbjct: 11  MLLGEVVECCTLDGESPVAESITSLRSDLSSMGHVESRVNQQGPPCKAKYSWVTDSEVV 69

[Close]
BLAST of CmoCh16G011330 vs. NCBI nr
Match: gi|674912928|emb|CDY20228.1| (BnaC09g30110D [Brassica napus])

HSP 1 Score: 89.4 bits (220), Expect = 6.6e-15
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 1 

Query: 54  KAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEAV 109
           +AVEC  LDGES VA++ITSLCSD  S+ HVES VNQQGPPCKAKYSWVTDSE V
Sbjct: 23  EAVECRTLDGESPVAESITSLCSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVV 77

[Close]
BLAST of CmoCh16G011330 vs. NCBI nr
Match: gi|149941236|emb|CAO02550.1| (putative ribosomal protein S3 [Vigna unguiculata])

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 45/72 (62.50%), Postives = 52/72 (72.22%), Query Frame = 1 

Query: 42  RRMWIGMNMNICKA-----VECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCK 101
           R  + G  +  C+A     +ECC LDGES VA++ITSL SD  S+ HVES VNQQGPPCK
Sbjct: 4   RPRYAGGELYKCRAARRSNIECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCK 63

Query: 102 AKYSWVTDSEAV 109
           AKYSWVTDSE V
Sbjct: 64  AKYSWVTDSEVV 75

[Close]
BLAST of CmoCh16G011330 vs. NCBI nr
Match: gi|593792004|ref|XP_007159041.1| (hypothetical protein PHAVU_002G203700g [Phaseolus vulgaris])

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-14
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 1 

Query: 55  AVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEAV 109
           ++ECC LDGES VA++ITSL SD  S+ HVES VNQQGPPCKAKYSWVTDSE V
Sbjct: 33  SIECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVV 86

[Close]
BLAST of CmoCh16G011330 vs. NCBI nr
Match: gi|149941196|emb|CAO02530.1| (putative 23S ribosomal RNA [Vigna unguiculata])

HSP 1 Score: 87.0 bits (214), Expect = 3.3e-14
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 1 

Query: 56  VECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEAV 109
           +ECC LDGES VA++ITSL SD  S+ HVES VNQQGPPCKAKYSWVTDSE V
Sbjct: 27  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVV 79

The following BLAST results are available for this feature:
BLAST of CmoCh16G011330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G011330 vs. TrEMBL
Match NameE-valueIdentityDescription
W9SL82_9ROSA2.1e-1574.58Ribulose bisphosphate carboxylase large chain OS=Morus notabilis GN=L484_000836 ... [more]
A0A170QM36_9MICO4.6e-1578.18Uncharacterized protein (Fragment) OS=Microbacterium sp. HM58-2 GN=MHM582_3608 P... [more]
A0A078G6E9_BRANA4.6e-1578.18BnaC09g16510D protein OS=Brassica napus GN=BnaC09g30110D PE=4 SV=1[more]
A6H5B3_VIGUN1.3e-1462.50Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata GN=rrn23 PE=2 SV=1[more]
V7CP58_PHAVU1.8e-1475.93Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G203700g PE=4 SV=1[more]
BLAST of CmoCh16G011330 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh16G011330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703069111|ref|XP_010088417.1|3.0e-1574.58Ribulose bisphosphate carboxylase large chain [Morus notabilis][more]
gi|674912928|emb|CDY20228.1|6.6e-1578.18BnaC09g30110D [Brassica napus][more]
gi|149941236|emb|CAO02550.1|1.9e-1462.50putative ribosomal protein S3 [Vigna unguiculata][more]
gi|593792004|ref|XP_007159041.1|2.5e-1475.93hypothetical protein PHAVU_002G203700g [Phaseolus vulgaris][more]
gi|149941196|emb|CAO02530.1|3.3e-1477.36putative 23S ribosomal RNA [Vigna unguiculata][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015977 carbon fixation
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0006468 protein phosphorylation
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G011330.1CmoCh16G011330.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G011330Watermelon (97103) v1cmowmB283
CmoCh16G011330Watermelon (97103) v1cmowmB294
CmoCh16G011330Cucurbita pepo (Zucchini)cmocpeB302
CmoCh16G011330Cucurbita pepo (Zucchini)cmocpeB308
CmoCh16G011330Cucurbita pepo (Zucchini)cmocpeB323
CmoCh16G011330Bottle gourd (USVL1VR-Ls)cmolsiB309
CmoCh16G011330Bottle gourd (USVL1VR-Ls)cmolsiB311
CmoCh16G011330Cucumber (Gy14) v2cgybcmoB302
CmoCh16G011330Cucumber (Gy14) v2cgybcmoB306
CmoCh16G011330Melon (DHL92) v3.6.1cmomedB320
CmoCh16G011330Melon (DHL92) v3.6.1cmomedB321
CmoCh16G011330Silver-seed gourdcarcmoB0766
CmoCh16G011330Silver-seed gourdcarcmoB0961
CmoCh16G011330Silver-seed gourdcarcmoB1051
CmoCh16G011330Cucumber (Chinese Long) v3cmocucB0371
CmoCh16G011330Cucumber (Chinese Long) v3cmocucB0376
CmoCh16G011330Watermelon (97103) v2cmowmbB341
CmoCh16G011330Watermelon (97103) v2cmowmbB315
CmoCh16G011330Wax gourdcmowgoB0415
CmoCh16G011330Cucurbita moschata (Rifu)cmocmoB282
CmoCh16G011330Cucurbita moschata (Rifu)cmocmoB294
CmoCh16G011330Cucumber (Gy14) v1cgycmoB0860
CmoCh16G011330Cucumber (Gy14) v1cgycmoB0887
CmoCh16G011330Cucurbita maxima (Rimu)cmacmoB323
CmoCh16G011330Cucurbita maxima (Rimu)cmacmoB588
CmoCh16G011330Cucurbita maxima (Rimu)cmacmoB806
CmoCh16G011330Wild cucumber (PI 183967)cmocpiB316
CmoCh16G011330Wild cucumber (PI 183967)cmocpiB321
CmoCh16G011330Cucumber (Chinese Long) v2cmocuB308
CmoCh16G011330Cucumber (Chinese Long) v2cmocuB313
CmoCh16G011330Melon (DHL92) v3.5.1cmomeB282
CmoCh16G011330Melon (DHL92) v3.5.1cmomeB291
CmoCh16G011330Watermelon (Charleston Gray)cmowcgB270
CmoCh16G011330Watermelon (Charleston Gray)cmowcgB272