CmoCh16G010080 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G010080
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description30S ribosomal protein S19, chloroplastic
LocationCmo_Chr16 : 6962789 .. 6965376 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGAAATTCACTGTGGCGCGCTCATTAAAAAAAAATCCTTTTGTGGGAAACCATTTATTAAAAAAAATAAATAAGCTTAACACAAAGGGAGAAAAAGAAATAATAGTAACTTGGTCCAGAGCATCTACCATTATACCCACAATGATTGGGCATACTATTGCTATTCATAATGGAAGGGACCACTTGCCTATTTATATAACGGATCGCATGGTAGGTCATAAATTGGGAGAATTTGCACCCACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAGTGAATATAGATACCTATCGTTCATTACTAAGAGGTAAACCCTATGATAAAGAAGATAAAAAAGAATCCGATTTTGAATCAGAAGAGAGATTTCAAGAAATGGCAGATCTATTCACTCTATCAATAACCGAGCCGGATCTGGTGTATCATAAGGGATTTGCCTTTTCTATTGATTCCTACGGATTGGATCAAAAACAATTCTTGAATGAGGTATTCAACTCCAGGGATGAATCGGATTGGATCAAAAACAATTCTTGAATGAGGTATTCAACTCCAGGGATGAATCGAAAAGGAAATATTTATTGGTTCTACCTCCTATTTTTTATGAAGAGAATGAATCTTTTTATCGAAGGATCAGAAAAAAATGGGTCCGAACCTCCCCGGGAATGATTTGGAAGATCCAAAACAAAAAAATAGTGGTATTTGCTAGCAACAACATAATGGAGGCAGTCAATCAATATAGATTGATCAAAAATAGTGGTATTTGCTAGCAACGACATAATGGTTCATGAATTAGGAAATAATCGGGTTTGTATAATAGGCATTGCTTATTACCCACAAAACATCTTACCCTGAACCCTGAATAGGAAAGAAAGAGAGAAATATTACCCATTGAACGACCCTGTTAGAGTCCCCCACAGAAGAAAGAGAGAAATATTACCCATTGCCCCACAGAAGAAAGAGAGAAATATTACCCAAAGAAAGAGAGAAATATTACCCATTGAACGACCCTGTTAGAGTCCCCCACAATATATAATTGTAGGTATGAAATACAATTTTAAGTAATGAACGACTCAACTCTTAAAAATTTTGGAAATTGTGTAATGATCTTGGAGATTGTGTAATGCTTACTCTAAAACTATTTGTTTATACCATTTTCGGATTCCTATCTAATGACCCAGGTGTATCCGAGTGGTTAAGTTGAAATCTGGGTTTTGTATATCCGAGTGGTTAAGGAGAAATCTGGGCTTTGTAGAATAGTCCAGGGGTATCTCTATGATCATAGAAATGAATAGAAATGGACTACATGCATGAACCATTTCACAAGTATGCATGAACCATTTCATATAAATGCCTGAATCCTTAACAATTACATGCATGAACCATTTCATAAGTATGTGTCCAGATAGTCTATCAATCATTAACTCTTGATCTTCCAGTTAAAAAGATGAAGATGTGTGGGTGCACGGGTGGGGATTGTAACTTTCCATTTATTTTCAGTCAATTAAGTAAATTGAAAACAATTCAATACCACGCTACTCTTTAACTCTTTATACATATTCATATGGGATTTGAGTAAATAAGTTTCATTTCAAACCTTTTTAACATCGATAGTTGTCTCAGCTAGCTTACACACATAATCTCGATAATCCACCTTCCACTACAAATTTGGATGTCAAGCAGACACGAATATTAAATCTTCTAGGATTTAGGTGTCAAGCAGACATGAAACTGATGCTAACTCGAATATTGTATGAAAAATGTTTTTTTAGAACTTTTAGTCAAAAGCTAAATCATTGATTAGTTTCTATTTTTACGTTTGCATTATAAATATATAATCTCGTAATGGGATATGCTTCAAATAAAAAAAAATGGCTCTTCTTCATTTATGTCTCAATAAGAATTGATATCGATGGCATTCGAACAAAAAAAAATTTAGAGATCTATTAAACCGTTGTCACCATCGTTATATAACTCTTTGTTTTGCACATCATCCCATCCATCATTGCAAGTAGTAGGCAGCAACGGAGAGCAACGAAGCGCCGATGAGAGAGCCGATTGCTGGAAGGCCGACAGTGGCGGCGCTGGTTGGTCCAGGTGCAGGAGCCGACGCCTCGTTCTGAGCCACGGCGGCGGTGACGGTTGCGGCAGCGAAGAGGACGGCGCAGGTGATCTTCTTCATTTCCATTGCGATTTTGAGATTTGTTTTTTGTTTTCGGTTATGGATTTGTGTGGCGGTATCCGGTGAAGAACTCGAGAAGGATCACCGAGAAACGCCTTCGCTTTGGAAATTGCTGCCTGATGAAATGGAGATGGAATGAATGTGATTTATAGGTGCAAATCCCAGCGATTTTCGGTGGAAGGTACGTTTCTATGGTGCTTTCATCTTGAATTGCAAAGCTATATTTAGATGAAACTTCCTCATTTGCATCGAAATCGATGACGGCGATTCGTCGTCGGGAAATTAGGGCTGAATTTGATCGATTCTTTCGGAAATCGTTTTTGTTTTATTTGTTATTTAAAAGAAAAAACAAATTCCTTTTTTTTCAGGAT

mRNA sequence

GGGAAATTCACTGTGGCGCGCTCATTAAAAAAAAATCCTTTTGTGGGAAACCATTTATTAAAAAAAATAAATAAGCTTAACACAAAGGGAGAAAAAGAAATAATAGTAACTTGGTCCAGAGCATCTACCATTATACCCACAATGATTGGGCATACTATTGCTATTCATAATGGAAGGGACCACTTGCCTATTTATATAACGGATCGCATGGATCAGAAAAAAATGGGTCCGAACCTCCCCGGGAATGATTTGGAAGATCCAAAACAAAAAAATAGTGGCAGCAACGGAGAGCAACGAAGCGCCGATGAGAGAGCCGATTGCTGGAAGGCCGACAGTGGCGGCGCTGGTTGGTCCAGGTGCAGGAGCCGACGCCTCGTTCTGAGCCACGGCGGCGGTGACGGTTGCGGCAGCGAAGAGGACGGCGCAGGTGCAAATCCCAGCGATTTTCGGTGGAAGGAT

Coding sequence (CDS)

GGGAAATTCACTGTGGCGCGCTCATTAAAAAAAAATCCTTTTGTGGGAAACCATTTATTAAAAAAAATAAATAAGCTTAACACAAAGGGAGAAAAAGAAATAATAGTAACTTGGTCCAGAGCATCTACCATTATACCCACAATGATTGGGCATACTATTGCTATTCATAATGGAAGGGACCACTTGCCTATTTATATAACGGATCGCATGGATCAGAAAAAAATGGGTCCGAACCTCCCCGGGAATGATTTGGAAGATCCAAAACAAAAAAATAGTGGCAGCAACGGAGAGCAACGAAGCGCCGATGAGAGAGCCGATTGCTGGAAGGCCGACAGTGGCGGCGCTGGTTGGTCCAGGTGCAGGAGCCGACGCCTCGTTCTGAGCCACGGCGGCGGTGACGGTTGCGGCAGCGAAGAGGACGGCGCAGGTGCAAATCCCAGCGATTTTCGGTGGAAGGAT
Homology
[Close]
BLAST of CmoCh16G010080 vs. Swiss-Prot
Match: RR19_CUCSA (30S ribosomal protein S19, chloroplastic OS=Cucumis sativus GN=rps19 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-31
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 5  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 64
          +ARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIA+HNG+DHLP+
Sbjct: 1  MARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAVHNGKDHLPV 60

Query: 65 YITDRMDQKKMGPNLP 81
          YITDRM   K+G   P
Sbjct: 61 YITDRMVGHKLGEFAP 76

[Close]
BLAST of CmoCh16G010080 vs. Swiss-Prot
Match: RR19_CICAR (30S ribosomal protein S19, chloroplastic OS=Cicer arietinum GN=rps19 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.7e-30
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 1 

Query: 5  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 64
          + RSLKKNPFV NHLL+KINKLNTKGEKEII+TWSRASTIIPTMIGHTIAIHNGR+HLPI
Sbjct: 1  MGRSLKKNPFVANHLLRKINKLNTKGEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPI 60

Query: 65 YITDRMDQKKMGPNLP 81
          YITDRM   K+G   P
Sbjct: 61 YITDRMVGHKLGEFSP 76

[Close]
BLAST of CmoCh16G010080 vs. Swiss-Prot
Match: RR19_MANES (30S ribosomal protein S19, chloroplastic OS=Manihot esculenta GN=rps19 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.4e-29
Identity = 62/76 (81.58%), Postives = 66/76 (86.84%), Query Frame = 1 

Query: 5  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 64
          + RSLKKNPFV NHLLKKINKLN K EKEIIVTWSRASTIIPTMIGHTIAIHNG++HLPI
Sbjct: 1  MTRSLKKNPFVANHLLKKINKLNNKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPI 60

Query: 65 YITDRMDQKKMGPNLP 81
          YITDRM   K+G   P
Sbjct: 61 YITDRMVGHKLGEFAP 76

[Close]
BLAST of CmoCh16G010080 vs. Swiss-Prot
Match: RR19_MORIN (30S ribosomal protein S19, chloroplastic OS=Morus indica GN=rps19 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 9.7e-29
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 1 

Query: 5  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 64
          +ARSLKKNPFV NHLL+KIN LNTK EKEIIVTWSRASTIIPTMIGHTIA+HNG++HLPI
Sbjct: 1  MARSLKKNPFVANHLLRKINMLNTKAEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHLPI 60

Query: 65 YITDRMDQKKMGPNLP 81
          YITDRM   K+G   P
Sbjct: 61 YITDRMVGHKLGEFAP 76

[Close]
BLAST of CmoCh16G010080 vs. Swiss-Prot
Match: RR19_GOSBA (30S ribosomal protein S19, chloroplastic OS=Gossypium barbadense GN=rps19 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 9.7e-29
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 1 

Query: 5  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 64
          +ARSLKKNPFV NHLLKKI +LNTK EKEII+TWSRASTIIPTMIGHTIAIHNG++HLPI
Sbjct: 1  MARSLKKNPFVANHLLKKIERLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGKEHLPI 60

Query: 65 YITDRMDQKKMGPNLP 81
          YITDRM   K+G   P
Sbjct: 61 YITDRMVGHKLGEFAP 76

[Close]
BLAST of CmoCh16G010080 vs. TrEMBL
Match: A0A0S2IFH8_9ROSI (Ribosomal protein S19 OS=Cucurbita andreana GN=rps19 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.7e-30
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 5  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 64
          +ARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI
Sbjct: 1  MARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 60

Query: 65 YITDRMDQKKMGPNLP 81
          YITDRM   K+G   P
Sbjct: 61 YITDRMVGHKLGEFAP 76

[Close]
BLAST of CmoCh16G010080 vs. TrEMBL
Match: A0A0S2IG03_CUCPE (Ribosomal protein S19 OS=Cucurbita pepo subsp. fraterna GN=rps19 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.7e-30
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 5  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 64
          +ARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI
Sbjct: 1  MARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 60

Query: 65 YITDRMDQKKMGPNLP 81
          YITDRM   K+G   P
Sbjct: 61 YITDRMVGHKLGEFAP 76

[Close]
BLAST of CmoCh16G010080 vs. TrEMBL
Match: A0A0S2IFW7_9ROSI (Ribosomal protein S19 OS=Cucurbita okeechobeensis subsp. martinezii GN=rps19 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.7e-30
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 5  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 64
          +ARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI
Sbjct: 1  MARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 60

Query: 65 YITDRMDQKKMGPNLP 81
          YITDRM   K+G   P
Sbjct: 61 YITDRMVGHKLGEFAP 76

[Close]
BLAST of CmoCh16G010080 vs. TrEMBL
Match: A0A0S2IGV9_9ROSI (Ribosomal protein S19 OS=Cucurbita pedatifolia GN=rps19 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.7e-30
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 5  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 64
          +ARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI
Sbjct: 1  MARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 60

Query: 65 YITDRMDQKKMGPNLP 81
          YITDRM   K+G   P
Sbjct: 61 YITDRMVGHKLGEFAP 76

[Close]
BLAST of CmoCh16G010080 vs. TrEMBL
Match: A0A0S2ID63_9ROSI (Ribosomal protein S19 OS=Cucurbita argyrosperma GN=rps19 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.7e-30
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 5  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 64
          +ARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI
Sbjct: 1  MARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 60

Query: 65 YITDRMDQKKMGPNLP 81
          YITDRM   K+G   P
Sbjct: 61 YITDRMVGHKLGEFAP 76

[Close]
BLAST of CmoCh16G010080 vs. TAIR10
Match: ATCG00820.1 (ATCG00820.1 ribosomal protein S19)

HSP 1 Score: 120.6 bits (301), Expect = 8.7e-28
Identity = 58/76 (76.32%), Postives = 63/76 (82.89%), Query Frame = 1 

Query: 5  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 64
          V RSLKKNPFV  HLL+KI KLNTK EKEII+TWSRASTIIPTMIGHTIAIHNGR+HLP+
Sbjct: 1  VTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPV 60

Query: 65 YITDRMDQKKMGPNLP 81
          YI D M   K+G   P
Sbjct: 61 YIIDLMVGHKLGEFSP 76

[Close]
BLAST of CmoCh16G010080 vs. NCBI nr
Match: gi|952954358|gb|ALO21722.1| (ribosomal protein S19 (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 139.0 bits (349), Expect = 6.7e-30
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 5  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 64
          +ARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI
Sbjct: 1  MARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 60

Query: 65 YITDRMDQKKMGPNLP 81
          YITDRM   K+G   P
Sbjct: 61 YITDRMVGHKLGEFAP 76

[Close]
BLAST of CmoCh16G010080 vs. NCBI nr
Match: gi|952955294|gb|ALO22644.1| (ribosomal protein S19 (plastid) [Cucurbita pepo subsp. ovifera])

HSP 1 Score: 138.7 bits (348), Expect = 8.8e-30
Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 5  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 64
          +ARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHT+AIHNGRDHLPI
Sbjct: 1  MARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTVAIHNGRDHLPI 60

Query: 65 YITDRMDQKKMGPNLP 81
          YITDRM   K+G   P
Sbjct: 61 YITDRMVGHKLGEFAP 76

[Close]
BLAST of CmoCh16G010080 vs. NCBI nr
Match: gi|952954552|gb|ALO21913.1| (ribosomal protein S19 (plastid) [Cucurbita cordata])

HSP 1 Score: 137.5 bits (345), Expect = 2.0e-29
Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 5  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 64
          +ARSLKKNPFVGNHLLKKINKLNTKG+KEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI
Sbjct: 1  MARSLKKNPFVGNHLLKKINKLNTKGKKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 60

Query: 65 YITDRMDQKKMGPNLP 81
          YITDRM   K+G   P
Sbjct: 61 YITDRMVGHKLGEFAP 76

[Close]
BLAST of CmoCh16G010080 vs. NCBI nr
Match: gi|68164844|ref|YP_247640.1| (ribosomal protein S19 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-29
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 5  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 64
          +ARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIA+HNG+DHLP+
Sbjct: 1  MARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAVHNGKDHLPV 60

Query: 65 YITDRMDQKKMGPNLP 81
          YITDRM   K+G   P
Sbjct: 61 YITDRMVGHKLGEFAP 76

[Close]
BLAST of CmoCh16G010080 vs. NCBI nr
Match: gi|346578232|ref|YP_004841824.1| (ribosomal protein S19 [Cucumis melo subsp. melo])

HSP 1 Score: 135.2 bits (339), Expect = 9.7e-29
Identity = 65/76 (85.53%), Postives = 69/76 (90.79%), Query Frame = 1 

Query: 5  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPI 64
          +ARSLKKNPFVGNHLLKKIN LNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNG+DHLP+
Sbjct: 1  MARSLKKNPFVGNHLLKKINTLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGKDHLPV 60

Query: 65 YITDRMDQKKMGPNLP 81
          YITDRM   K+G   P
Sbjct: 61 YITDRMVGHKLGEFAP 76

The following BLAST results are available for this feature:
BLAST of CmoCh16G010080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR19_CUCSA1.6e-3185.5330S ribosomal protein S19, chloroplastic OS=Cucumis sativus GN=rps19 PE=3 SV=1[more]
RR19_CICAR6.7e-3082.8930S ribosomal protein S19, chloroplastic OS=Cicer arietinum GN=rps19 PE=3 SV=1[more]
RR19_MANES7.4e-2981.5830S ribosomal protein S19, chloroplastic OS=Manihot esculenta GN=rps19 PE=3 SV=1[more]
RR19_MORIN9.7e-2980.2630S ribosomal protein S19, chloroplastic OS=Morus indica GN=rps19 PE=3 SV=1[more]
RR19_GOSBA9.7e-2980.2630S ribosomal protein S19, chloroplastic OS=Gossypium barbadense GN=rps19 PE=3 S... [more]
BLAST of CmoCh16G010080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S2IFH8_9ROSI4.7e-3089.47Ribosomal protein S19 OS=Cucurbita andreana GN=rps19 PE=3 SV=1[more]
A0A0S2IG03_CUCPE4.7e-3089.47Ribosomal protein S19 OS=Cucurbita pepo subsp. fraterna GN=rps19 PE=3 SV=1[more]
A0A0S2IFW7_9ROSI4.7e-3089.47Ribosomal protein S19 OS=Cucurbita okeechobeensis subsp. martinezii GN=rps19 PE=... [more]
A0A0S2IGV9_9ROSI4.7e-3089.47Ribosomal protein S19 OS=Cucurbita pedatifolia GN=rps19 PE=3 SV=1[more]
A0A0S2ID63_9ROSI4.7e-3089.47Ribosomal protein S19 OS=Cucurbita argyrosperma GN=rps19 PE=3 SV=1[more]
BLAST of CmoCh16G010080 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00820.18.7e-2876.32ATCG00820.1 ribosomal protein S19[more]
BLAST of CmoCh16G010080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|952954358|gb|ALO21722.1|6.7e-3089.47ribosomal protein S19 (plastid) [Cucurbita argyrosperma][more]
gi|952955294|gb|ALO22644.1|8.8e-3088.16ribosomal protein S19 (plastid) [Cucurbita pepo subsp. ovifera][more]
gi|952954552|gb|ALO21913.1|2.0e-2988.16ribosomal protein S19 (plastid) [Cucurbita cordata][more]
gi|68164844|ref|YP_247640.1|2.6e-2985.53ribosomal protein S19 [Cucumis sativus][more]
gi|346578232|ref|YP_004841824.1|9.7e-2985.53ribosomal protein S19 [Cucumis melo subsp. melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002222Ribosomal_S19
IPR005732Ribosomal_S19_bac-type
IPR023575Ribosomal_S19_SF
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G010080.1CmoCh16G010080.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002222Ribosomal protein S19/S15PRINTSPR00975RIBOSOMALS19coord: 37..56
score: 2.3E-14coord: 57..69
score: 2.3
IPR002222Ribosomal protein S19/S15HAMAPMF_00531Ribosomal_S19coord: 5..93
score: 1
IPR002222Ribosomal protein S19/S15PANTHERPTHR11880RIBOSOMAL PROTEIN S19P FAMILY MEMBERcoord: 7..107
score: 1.8
IPR002222Ribosomal protein S19/S15PFAMPF00203Ribosomal_S19coord: 7..76
score: 2.1
IPR005732Ribosomal protein S19, bacterial-typeTIGRFAMsTIGR01050TIGR01050coord: 6..77
score: 1.8
IPR023575Ribosomal protein S19, superfamilyGENE3DG3DSA:3.30.860.10coord: 6..76
score: 3.1
IPR023575Ribosomal protein S19, superfamilyunknownSSF54570Ribosomal protein S19coord: 7..76
score: 6.41
NoneNo IPR availablePANTHERPTHR11880:SF9RIBOSOMAL PROTEIN S19, MITOCHONDRIALcoord: 7..107
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G010080Cucumber (Gy14) v1cgycmoB0027
CmoCh16G010080Cucurbita maxima (Rimu)cmacmoB323
CmoCh16G010080Cucurbita maxima (Rimu)cmacmoB804
CmoCh16G010080Wild cucumber (PI 183967)cmocpiB324
CmoCh16G010080Cucumber (Chinese Long) v2cmocuB315
CmoCh16G010080Melon (DHL92) v3.5.1cmomeB283
CmoCh16G010080Watermelon (Charleston Gray)cmowcgB277
CmoCh16G010080Watermelon (Charleston Gray)cmowcgB280
CmoCh16G010080Watermelon (97103) v1cmowmB286
CmoCh16G010080Cucurbita pepo (Zucchini)cmocpeB308
CmoCh16G010080Cucurbita pepo (Zucchini)cmocpeB329
CmoCh16G010080Bottle gourd (USVL1VR-Ls)cmolsiB306
CmoCh16G010080Cucumber (Gy14) v2cgybcmoB311
CmoCh16G010080Melon (DHL92) v3.6.1cmomedB330
CmoCh16G010080Silver-seed gourdcarcmoB0012
CmoCh16G010080Cucumber (Chinese Long) v3cmocucB0378
CmoCh16G010080Watermelon (97103) v2cmowmbB321
CmoCh16G010080Wax gourdcmowgoB0414
CmoCh16G010080Cucurbita moschata (Rifu)cmocmoB291