CmoCh16G009590 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G009590
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Syntaxin-51
Location	Cmo_Chr16 : 6354364 .. 6357619 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTCTTCCATTCCCTTCCCTGGACCTTCTACGAAGAACATCCAACGTCGACCACGGGAATTTGACTCCCTCTCCCGCCGTGGTCAATACGACGTTGATCTCATTCATCTCAAATTGTGCTTTATTTCCTCCTCCCACAGGTGAATTTCCTGGTCTGATTTTTTTCTTCCTTGAGCCTTTGATTCTGCTTCGTCTTCATCCATTTTGTCCGTCAATTTCTGGAAACTGGCCGACATTGCATTGGATTATTGAAACGAGTTTCGTTTGCGTTGGTTATTCCGATGAACGCATCCTTATTTTTCCGATATATACAATTAGGTTTCGTTCAGCAGACGGTAGTTTATTTTGATTGATTCTTTTTCGGCCTTGTTTCTTTTGGTAAGATGAATGATAGAAGTAGAATTATTCATCTGGTTTCGTGATATGTTTACTTGTCATCAATTTTCCTTGTATTTTCTTACCATTTTTAATTTCATGGTAGATGGTTATATGAATTGGAATATTTTTCTTTTTAGCAAACCGAGCTATGCTAGGTAGATATTATGAATTTGAATATTTGATTATGTCATTTGGAAACTTTTAATTCAATCGCCATCGGTTAGCTTTATGGGGTTGTGACATTAGGTGGAGGGGCATGCACGCTGGATACTCTCTGATATGAACACAAAATTAACCAAAAATCCGTTTTGGTGCTTGTTTTTGGAATTGATTTTAGGAGTATTTATGAGTCTAATGGAGATAAGAGTATAATATACCGTTATTAATGCGTCTCTTCTTGTCAGGTTGGTGATGGCTTCTTCTGATTTATGGTTAAAGGAATATAATGAAGCCTCTAAGCTTGGGGATGATATCAATGGCATGATTTCTGAAAGAAGTTCCGTTCCTGCAACTGGACCAGAAGCTCAACGTCATGCCTCCGCGATTCGGAGGAAGATCACGATTTTGGGGACTAAAGTTGATGGCTTAGAGTCCCTTTTGTTGAAGCTTCCTGTAAAGCAGCCCCTGTATGTCATGTCTTAAATTGAATTTAGCAATATCCTTACTTGCATAATGCTATGCTAATGTTAGAGCATTTTGGTTTGAGTTCTGTTTCTGTCATGTATATACTCACGTTGCTTTAAAATCCAAGTAACAATTGTTCATCTAACCTTGAGATGTAGATGACTTTTCGTGTTCTAGAGGGATGCATAGTTGAGAAAGATATATGTACTAGTTCTTAGTTCTTGGCATCTTTGAGGGGACAGCAAATGCCATGGTTCGATCTCCCTCCTCTTCACTACTGCACTAAATTATGAGAGACTGATGAAGGGGAGGGGAGTGAGTACGGCGGAGTTCTTGCCAGAAATGTCCTCTGACTTTGATCCTTGCATCAACCAAGGCATAAGAACTATTTTTCCATCCCAAGGGACCAAAACTTTGAGATTGAAATTACATATGTAATGGCCCAAGCCTACTGCCAGTAGATATTGTCCTCTATAGGCTTTCCCTTTCGGGCTTCCTCTTAAGATTTTTAAAACGCGTCTAGTAGGGAGAGGTTTCCACACCCTTATAAAGAATAATTCGTTCTCCTCTCCAACCGATGTGGGATCTCACACTATTTTTTTCCTCTCAAGGTTTTTAAAACACGTCTGGTAGGGAGAGGAAGGGAGAGGTTTCTACACCATTATAAAGAATAATTCGTTCTCCTCTCCAACCGACATGGGATCTCACACTATTTTTTTCTAAGCCCAAGTTTGTTCTTTCTTGTGGTTTGCAGGTCTGAAAAGGAGATAAATCGACGAAAGGACATGCTTGCTCAGATGAGATCAAAAGTAAACCAGATGGCCTCAACGCTGAACATGTCAAACTTCGCTAACCGCAACAGTTTGCTTGGCCCTGATATGAAATCAGCGGATGTAATGAGCAAAACAGCTGAACTAGACAACCAAGGACTTGTTGGTTTTCAAAGACAAATCATGAAGGGCAAGTTTTTGTGTCAACTCTACTTTCAACATATTATATACTTCCTTGTATCCCTTTTGGGTCTTCTCTGATATGATTTTGAAACAGAGCAAGATGAAGGTCTTGAAAAGTTGGAGGAGACCATAAGAAGTACAAAACATATTGCTTTGGCAGTTAATGAAGAACTCGATCTTCATACTCGCCTAATTGTATGTATGATTTCTTGTTTTCTTTATGCATGCTGTAAGAGTTCATTCCATGTCGTCTACGTTTAGTTTTACATGTCATCTAATCATACTTTTCTCTGCAGGATGACTTAGACCAGCATGTCGATGTTACAGACTCTCGATTAGCGGTAAAATCCTCTCTTACTATTCATTTTTGGCTTTAGATATCTCTAGGATGTAGGGCTAATTCATCACTAGTTGAAATAGATATGGTAATATTCGTGTTATTGTTGCCTCTTTTACAACAATGACAAGAAAAATTGGTTAATTAATCTGGGAGCTTCACAGAATATGAAACTGACTGTTGTAGAAAATATTCAACTGTAAAAACCTGATAATTATATGTGCTTGATGATCTTGATCTCAAGAAGCTAATATGTCTTACGGATCCTGGCCTTTGCATCTCAATATGGCGATATTGTCCAACTTAATAAGCTGCTCTCTGATAAGCGCCTACAATACTAGATTTACAAAGTTAGAGGTCCTTCTAAGATCCTTGCACACTTTCACAAATAAAGCTACTTAACGAATGATTCCAACCAAGAGCTAGTTAGAAGGAATTAACTACTTTGCAGATGTAATGTAAAGGCTTCTTGAATCTTCTTTACCCTGCTTCTTCTAATTGCTCCTCCGGTACATGCAAAAGATCCGTTGTTAGATTCATATCACTCTCCGCACATGGTTTTACTTTAAGATTTTATACAAAAGACTTCGTACAGCTCTTACTCATACCTGATCTCTAATGAACGTGAAACTATTGATATCTCAACGATCCTTCCATCAAATAAAAGATGATCAAATGAAGGATGAACGAGCATTAAATTTCTTGAAATCCTTTGTGTGTTACCCTGTGGTTAAATCTTGGTTTTGTTTCTGAGAACAGAGGGTGCAGAAGAGATTAGGAATATTGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTGGGAATGCTTCTGTCTGTGGTAGGTATTGTGGGTTTAATTGCTGTCATATGGCTACTCATTCGATACTTGTAAACACAACATAACCATATGGGTATAGATTTTTCACTTTATGATTAATATCATCATCCATAATTGTCCAG

mRNA sequence

ATGGAGTTTCTTCCATTCCCTTCCCTGGACCTTCTACGAAGAACATCCAACGTCGACCACGGGAATTTGACTCCCTCTCCCGCCGTGGTCAATACGACGTTGGTGATGGCTTCTTCTGATTTATGGTTAAAGGAATATAATGAAGCCTCTAAGCTTGGGGATGATATCAATGGCATGATTTCTGAAAGAAGTTCCGTTCCTGCAACTGGACCAGAAGCTCAACGTCATGCCTCCGCGATTCGGAGGAAGATCACGATTTTGGGGACTAAAGTTGATGGCTTAGAGTCCCTTTTGTTGAAGCTTCCTGTAAAGCAGCCCCTATCAAAAGTAAACCAGATGGCCTCAACGCTGAACATGTCAAACTTCGCTAACCGCAACAGTTTGCTTGGCCCTGATATGAAATCAGCGGATGTAATGAGCAAAACAGCTGAACTAGACAACCAAGGACTTGTTGAGCAAGATGAAGGTCTTGAAAAGTTGGAGGAGACCATAAGAAGTACAAAACATATTGCTTTGGCAGTTAATGAAGAACTCGATCTTCATACTCGCCTAATTGATGACTTAGACCAGCATGTCGATGTTACAGACTCTCGATTAGCGATATCTCTAGGATGTAGGGCTAATTCATCACTAGTTGAAATAGATATGAGGGTGCAGAAGAGATTAGGAATATTGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTGGGAATGCTTCTGTCTGTGGTAGGTATTGTGGGTTTAATTGCTGTCATATGGCTACTCATTCGATACTTGTAAACACAACATAACCATATGGGTATAGATTTTTCACTTTATGATTAATATCATCATCCATAATTGTCCAG

Coding sequence (CDS)

ATGGAGTTTCTTCCATTCCCTTCCCTGGACCTTCTACGAAGAACATCCAACGTCGACCACGGGAATTTGACTCCCTCTCCCGCCGTGGTCAATACGACGTTGGTGATGGCTTCTTCTGATTTATGGTTAAAGGAATATAATGAAGCCTCTAAGCTTGGGGATGATATCAATGGCATGATTTCTGAAAGAAGTTCCGTTCCTGCAACTGGACCAGAAGCTCAACGTCATGCCTCCGCGATTCGGAGGAAGATCACGATTTTGGGGACTAAAGTTGATGGCTTAGAGTCCCTTTTGTTGAAGCTTCCTGTAAAGCAGCCCCTATCAAAAGTAAACCAGATGGCCTCAACGCTGAACATGTCAAACTTCGCTAACCGCAACAGTTTGCTTGGCCCTGATATGAAATCAGCGGATGTAATGAGCAAAACAGCTGAACTAGACAACCAAGGACTTGTTGAGCAAGATGAAGGTCTTGAAAAGTTGGAGGAGACCATAAGAAGTACAAAACATATTGCTTTGGCAGTTAATGAAGAACTCGATCTTCATACTCGCCTAATTGATGACTTAGACCAGCATGTCGATGTTACAGACTCTCGATTAGCGATATCTCTAGGATGTAGGGCTAATTCATCACTAGTTGAAATAGATATGAGGGTGCAGAAGAGATTAGGAATATTGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTGGGAATGCTTCTGTCTGTGGTAGGTATTGTGGGTTTAATTGCTGTCATATGGCTACTCATTCGATACTTGTAA

Homology

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BLAST of CmoCh16G009590 vs. Swiss-Prot
Match: SYP52_ARATH (Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.4e-64
Identity = 142/247 (57.49%), Postives = 173/247 (70.04%), Query Frame = 1


Query: 37  ASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASAIRRKITILGTKVDGLES 96
           +SSD W++EYNEA KL +DINGM+SER++   TGP+AQR ASAIRRKITILGT++D L+S
Sbjct: 3   SSSDPWMREYNEALKLSEDINGMMSERNASGLTGPDAQRRASAIRRKITILGTRLDSLQS 62

Query: 97  LLLKLPVKQPL----------------SKVNQMASTLNMSNFANRNSLLGPDMKSADVMS 156
           LL+K+P KQ +                SK NQ+AS LNMSNFANR+SL G D+K  D ++
Sbjct: 63  LLVKVPGKQHVSEKEMNRRKDMVGNLRSKTNQVASALNMSNFANRDSLFGTDLKPDDAIN 122

Query: 157 KTAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHV 216
           + + +DNQG+V        EQDEGLEKLEET+ STKHIALAVNEEL L TRLIDDLD  V
Sbjct: 123 RVSGMDNQGIVVFQRQVMREQDEGLEKLEETVMSTKHIALAVNEELTLQTRLIDDLDYDV 182

Query: 217 DVTDSRLAISLGCRANSSLVEIDMRVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVI 260
           D+TDSRL                 RVQK L ++NK  K  CSC+ MLLSV+GIVGL  VI
Sbjct: 183 DITDSRL----------------RRVQKSLALMNKSMKSGCSCMSMLLSVLGIVGLALVI 233

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BLAST of CmoCh16G009590 vs. Swiss-Prot
Match: SYP51_ARATH (Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.5e-63
Identity = 140/246 (56.91%), Postives = 170/246 (69.11%), Query Frame = 1


Query: 37  ASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASAIRRKITILGTKVDGLES 96
           +SSD W++ YNEA KL ++INGMISERSS   TGP+AQR ASAIRRKITI G K+D L+S
Sbjct: 3   SSSDSWMRAYNEALKLSEEINGMISERSSSAVTGPDAQRRASAIRRKITIFGNKLDSLQS 62

Query: 97  LLLKL---PVKQP------------LSKVNQMASTLNMSNFANRNSLLGPDMKSADVMSK 156
           LL ++   P+ +              SK NQMA+ LNMSNFANR+SLLGPD+K  D MS+
Sbjct: 63  LLAEIHGKPISEKEMNRRKDMVGNLRSKANQMANALNMSNFANRDSLLGPDIKPDDSMSR 122

Query: 157 TAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHVD 216
              +DNQG+V        EQDEGLE+LE T+ STKHIALAV+EELDL TRLIDDLD HVD
Sbjct: 123 VTGMDNQGIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELDLQTRLIDDLDYHVD 182

Query: 217 VTDSRLAISLGCRANSSLVEIDMRVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVIW 260
           VTDSRL                 RVQK L ++NK  +  CSC+ MLLSV+GIVGL  VIW
Sbjct: 183 VTDSRL----------------RRVQKSLAVMNKNMRSGCSCMSMLLSVLGIVGLAVVIW 232

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BLAST of CmoCh16G009590 vs. TrEMBL
Match: A0A0A0L4X9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G064180 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 1.2e-86
Identity = 188/249 (75.50%), Postives = 198/249 (79.52%), Query Frame = 1


Query: 35  VMASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASAIRRKITILGTKVDGL 94
           +MA SDLW+KEYNEASKLGDDINGMISERSS PATGPE+QRHASAIRRKITILGTKVDGL
Sbjct: 1   MMAPSDLWIKEYNEASKLGDDINGMISERSSFPATGPESQRHASAIRRKITILGTKVDGL 60

Query: 95  ESLLLKLPVKQPL----------------SKVNQMASTLNMSNFANRNSLLGPDMKSADV 154
           +SLLLKLPVKQPL                SKV QMASTLNMSNFANR+SLLGP+MKSADV
Sbjct: 61  QSLLLKLPVKQPLSEKEINRRKDMLVQMRSKVKQMASTLNMSNFANRDSLLGPEMKSADV 120

Query: 155 MSKTAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQ 214
           MSKTAELDNQGLV        EQDEGLEKLEETI STKHIALAVNEEL LHTRLIDDLDQ
Sbjct: 121 MSKTAELDNQGLVGFQRKIMKEQDEGLEKLEETITSTKHIALAVNEELSLHTRLIDDLDQ 180

Query: 215 HVDVTDSRLAISLGCRANSSLVEIDMRVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIA 260
           HVDVTDS+LA                   KRLGI+NKRAKGSCSC GMLLSVVGIV LI 
Sbjct: 181 HVDVTDSQLA-------------------KRLGIMNKRAKGSCSCFGMLLSVVGIVVLIT 230

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BLAST of CmoCh16G009590 vs. TrEMBL
Match: A0A067F471_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026774mg PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 2.1e-75
Identity = 165/247 (66.80%), Postives = 189/247 (76.52%), Query Frame = 1


Query: 37  ASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASAIRRKITILGTKVDGLES 96
           ++SD W+KEYNEA KL DDINGMISERSS+PA+GPE+QRHASAIRRKITILGT++D L+S
Sbjct: 3   SASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQS 62

Query: 97  LLLKLPVKQPL----------------SKVNQMASTLNMSNFANRNSLLGPDMKSADVMS 156
           LL KLP KQP+                SKVNQMASTLNMSNFANR+SLLGP++KSADVM+
Sbjct: 63  LLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMN 122

Query: 157 KTAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHV 216
           +   LDNQGLV        EQDEGLEKLEET+ STKHIALAVNEELDLHTRLIDDLDQHV
Sbjct: 123 RATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHV 182

Query: 217 DVTDSRLAISLGCRANSSLVEIDMRVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVI 260
           DVTDSRL                 RVQK L ILNKR KG C+C+ MLL+V+GIV L+ VI
Sbjct: 183 DVTDSRL----------------RRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVI 233

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BLAST of CmoCh16G009590 vs. TrEMBL
Match: V4TYR6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009364mg PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 2.1e-75
Identity = 165/247 (66.80%), Postives = 189/247 (76.52%), Query Frame = 1


Query: 37  ASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASAIRRKITILGTKVDGLES 96
           ++SD W+KEYNEA KL DDINGMISERSS+PA+GPE+QRHASAIRRKITILGT++D L+S
Sbjct: 3   SASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQS 62

Query: 97  LLLKLPVKQPL----------------SKVNQMASTLNMSNFANRNSLLGPDMKSADVMS 156
           LL KLP KQP+                SKVNQMASTLNMSNFANR+SLLGP++KSADVM+
Sbjct: 63  LLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMN 122

Query: 157 KTAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHV 216
           +   LDNQGLV        EQDEGLEKLEET+ STKHIALAVNEELDLHTRLIDDLDQHV
Sbjct: 123 RATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHV 182

Query: 217 DVTDSRLAISLGCRANSSLVEIDMRVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVI 260
           DVTDSRL                 RVQK L ILNKR KG C+C+ MLL+V+GIV L+ VI
Sbjct: 183 DVTDSRL----------------RRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVI 233

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BLAST of CmoCh16G009590 vs. TrEMBL
Match: A0A0B2NR01_GLYSO (Syntaxin-51 OS=Glycine soja GN=glysoja_006358 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.8e-74
Identity = 165/246 (67.07%), Postives = 185/246 (75.20%), Query Frame = 1


Query: 35  VMASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASAIRRKITILGTKVDGL 94
           +MASSD W+KEYNEA KL DDINGMISERSS PA+GPE QRHASAIRRKITILGT++D L
Sbjct: 6   LMASSDSWMKEYNEAVKLADDINGMISERSSFPASGPETQRHASAIRRKITILGTRLDSL 65

Query: 95  ESLLLKLPVKQP-------------LSKVNQMASTLNMSNFANRNSLLGPDMKSADVMSK 154
           +SLL K+P K                +KVNQMASTLNMSNFANR+SLLGP++KS D MS+
Sbjct: 66  QSLLSKVPAKTEKEMNRRKDMLANLRTKVNQMASTLNMSNFANRDSLLGPEIKS-DAMSR 125

Query: 155 TAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHVD 214
           T  LDN GLV        EQD+GLEKLEET+ STKHIALAVNEEL+LHTRLIDDLDQHVD
Sbjct: 126 TVGLDNSGLVGLQRQIMKEQDDGLEKLEETVISTKHIALAVNEELNLHTRLIDDLDQHVD 185

Query: 215 VTDSRLAISLGCRANSSLVEIDMRVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVIW 260
           VTDSRL                 RVQK L +LNKR KG CSCL MLLSV+GIVGL+ VIW
Sbjct: 186 VTDSRL----------------RRVQKNLAVLNKRTKGGCSCLCMLLSVIGIVGLVVVIW 234

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BLAST of CmoCh16G009590 vs. TrEMBL
Match: I1KYD6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G322600 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.4e-74
Identity = 165/245 (67.35%), Postives = 184/245 (75.10%), Query Frame = 1


Query: 36  MASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASAIRRKITILGTKVDGLE 95
           MASSD W+KEYNEA KL DDINGMISERSS PA+GPE QRHASAIRRKITILGT++D L+
Sbjct: 1   MASSDSWMKEYNEAVKLADDINGMISERSSFPASGPETQRHASAIRRKITILGTRLDSLQ 60

Query: 96  SLLLKLPVKQP-------------LSKVNQMASTLNMSNFANRNSLLGPDMKSADVMSKT 155
           SLL K+P K                +KVNQMASTLNMSNFANR+SLLGP++KS D MS+T
Sbjct: 61  SLLSKVPAKTEKEMNRRKDMLANLRTKVNQMASTLNMSNFANRDSLLGPEIKS-DAMSRT 120

Query: 156 AELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHVDV 215
             LDN GLV        EQD+GLEKLEET+ STKHIALAVNEEL+LHTRLIDDLDQHVDV
Sbjct: 121 VGLDNSGLVGLQRQIMKEQDDGLEKLEETVISTKHIALAVNEELNLHTRLIDDLDQHVDV 180

Query: 216 TDSRLAISLGCRANSSLVEIDMRVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVIWL 260
           TDSRL                 RVQK L +LNKR KG CSCL MLLSV+GIVGL+ VIWL
Sbjct: 181 TDSRL----------------RRVQKNLAVLNKRTKGGCSCLCMLLSVIGIVGLVVVIWL 228

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BLAST of CmoCh16G009590 vs. TAIR10
Match: AT1G79590.1 (AT1G79590.1 syntaxin of plants 52)

HSP 1 Score: 246.9 bits (629), Expect = 1.4e-65
Identity = 142/247 (57.49%), Postives = 173/247 (70.04%), Query Frame = 1


Query: 37  ASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASAIRRKITILGTKVDGLES 96
           +SSD W++EYNEA KL +DINGM+SER++   TGP+AQR ASAIRRKITILGT++D L+S
Sbjct: 3   SSSDPWMREYNEALKLSEDINGMMSERNASGLTGPDAQRRASAIRRKITILGTRLDSLQS 62

Query: 97  LLLKLPVKQPL----------------SKVNQMASTLNMSNFANRNSLLGPDMKSADVMS 156
           LL+K+P KQ +                SK NQ+AS LNMSNFANR+SL G D+K  D ++
Sbjct: 63  LLVKVPGKQHVSEKEMNRRKDMVGNLRSKTNQVASALNMSNFANRDSLFGTDLKPDDAIN 122

Query: 157 KTAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHV 216
           + + +DNQG+V        EQDEGLEKLEET+ STKHIALAVNEEL L TRLIDDLD  V
Sbjct: 123 RVSGMDNQGIVVFQRQVMREQDEGLEKLEETVMSTKHIALAVNEELTLQTRLIDDLDYDV 182

Query: 217 DVTDSRLAISLGCRANSSLVEIDMRVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVI 260
           D+TDSRL                 RVQK L ++NK  K  CSC+ MLLSV+GIVGL  VI
Sbjct: 183 DITDSRL----------------RRVQKSLALMNKSMKSGCSCMSMLLSVLGIVGLALVI 233

[Close]

BLAST of CmoCh16G009590 vs. TAIR10
Match: AT1G16240.1 (AT1G16240.1 syntaxin of plants 51)

HSP 1 Score: 243.0 bits (619), Expect = 2.0e-64
Identity = 140/246 (56.91%), Postives = 170/246 (69.11%), Query Frame = 1


Query: 37  ASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASAIRRKITILGTKVDGLES 96
           +SSD W++ YNEA KL ++INGMISERSS   TGP+AQR ASAIRRKITI G K+D L+S
Sbjct: 3   SSSDSWMRAYNEALKLSEEINGMISERSSSAVTGPDAQRRASAIRRKITIFGNKLDSLQS 62

Query: 97  LLLKL---PVKQP------------LSKVNQMASTLNMSNFANRNSLLGPDMKSADVMSK 156
           LL ++   P+ +              SK NQMA+ LNMSNFANR+SLLGPD+K  D MS+
Sbjct: 63  LLAEIHGKPISEKEMNRRKDMVGNLRSKANQMANALNMSNFANRDSLLGPDIKPDDSMSR 122

Query: 157 TAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHVD 216
              +DNQG+V        EQDEGLE+LE T+ STKHIALAV+EELDL TRLIDDLD HVD
Sbjct: 123 VTGMDNQGIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELDLQTRLIDDLDYHVD 182

Query: 217 VTDSRLAISLGCRANSSLVEIDMRVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVIW 260
           VTDSRL                 RVQK L ++NK  +  CSC+ MLLSV+GIVGL  VIW
Sbjct: 183 VTDSRL----------------RRVQKSLAVMNKNMRSGCSCMSMLLSVLGIVGLAVVIW 232

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BLAST of CmoCh16G009590 vs. TAIR10
Match: AT1G16230.1 (AT1G16230.1 Target SNARE coiled-coil domain protein)

HSP 1 Score: 134.8 bits (338), Expect = 7.6e-32
Identity = 85/185 (45.95%), Postives = 111/185 (60.00%), Query Frame = 1


Query: 40  DLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASAIRRKITILGTKVDGLESLLL 99
           D W++E NE  KL ++I+GMI ERSS+  T   A RHAS++RRKITIL T+V  L+ LL 
Sbjct: 6   DSWIREQNETLKLSEEIDGMILERSSLAETSSYALRHASSMRRKITILATRVQTLKYLLA 65

Query: 100 ---------------KLPVKQPLSKVNQMASTLNMSNFANRNSLLGPDMKSADVMSKTAE 159
                          K   +   SK NQMAS L+M  F+N + LL P+    D+MS+   
Sbjct: 66  ESQGKSISGKEMSRRKGTFENLRSKANQMASALDMLKFSNIDILLRPE--KDDIMSRVIG 125

Query: 160 LDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHVDVTD 202
           LDNQG+V        E DE L+ LEET+   KH AL +NE++ L TRLID LD HVDV+D
Sbjct: 126 LDNQGIVGLHRQVMKEHDEALDMLEETVMRVKHNALVMNEQIGLQTRLIDGLDHHVDVSD 185

[Close]

BLAST of CmoCh16G009590 vs. TAIR10
Match: AT1G16225.1 (AT1G16225.1 Target SNARE coiled-coil domain protein)

HSP 1 Score: 95.9 bits (237), Expect = 3.9e-20
Identity = 72/162 (44.44%), Postives = 90/162 (55.56%), Query Frame = 1


Query: 59  MISERSSVPATGPEAQRHASAIRRKITILGTKVDGLESLLL---------------KLPV 118
           MI ERSS+  T   A+ HAS +RRKITIL   V  L++LL                K  V
Sbjct: 1   MILERSSLAETSSYARGHASYMRRKITILANGVQTLKNLLAESQGKSISAKEMSRCKDMV 60

Query: 119 KQPLSKVNQMASTLNMSNFANRNSLLGPDMKSADVMSKTAELDNQGLVE--------QDE 178
           +   SK  QMAS L+M  F+N  SLLG D    D+MS+  ++DNQ +V         QD+
Sbjct: 61  EDLRSKAYQMASALDMLKFSNIGSLLGQD----DIMSRVIDMDNQEIVGFQRTTMKVQDK 120

Query: 179 GLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHVDVTDS 198
            LE LE+ +   K  ALA+N EL L TRLID LD HVDV+ S
Sbjct: 121 ALEMLEKGVMHLKREALAMNMELGLQTRLIDRLDHHVDVSAS 158

[Close]

BLAST of CmoCh16G009590 vs. NCBI nr
Match: gi|449463737|ref|XP_004149588.1| (PREDICTED: syntaxin-52-like [Cucumis sativus])

HSP 1 Score: 334.3 bits (856), Expect = 1.8e-88
Identity = 191/249 (76.71%), Postives = 201/249 (80.72%), Query Frame = 1


Query: 35  VMASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASAIRRKITILGTKVDGL 94
           +MA SDLW+KEYNEASKLGDDINGMISERSS PATGPE+QRHASAIRRKITILGTKVDGL
Sbjct: 1   MMAPSDLWIKEYNEASKLGDDINGMISERSSFPATGPESQRHASAIRRKITILGTKVDGL 60

Query: 95  ESLLLKLPVKQPL----------------SKVNQMASTLNMSNFANRNSLLGPDMKSADV 154
           +SLLLKLPVKQPL                SKV QMASTLNMSNFANR+SLLGP+MKSADV
Sbjct: 61  QSLLLKLPVKQPLSEKEINRRKDMLVQMRSKVKQMASTLNMSNFANRDSLLGPEMKSADV 120

Query: 155 MSKTAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQ 214
           MSKTAELDNQGLV        EQDEGLEKLEETI STKHIALAVNEEL LHTRLIDDLDQ
Sbjct: 121 MSKTAELDNQGLVGFQRKIMKEQDEGLEKLEETITSTKHIALAVNEELSLHTRLIDDLDQ 180

Query: 215 HVDVTDSRLAISLGCRANSSLVEIDMRVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIA 260
           HVDVTDS+LA                RVQKRLGI+NKRAKGSCSC GMLLSVVGIV LI 
Sbjct: 181 HVDVTDSQLA----------------RVQKRLGIMNKRAKGSCSCFGMLLSVVGIVVLIT 233

[Close]

BLAST of CmoCh16G009590 vs. NCBI nr
Match: gi|700200936|gb|KGN56069.1| (hypothetical protein Csa_3G064180 [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 1.7e-86
Identity = 188/249 (75.50%), Postives = 198/249 (79.52%), Query Frame = 1


Query: 35  VMASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASAIRRKITILGTKVDGL 94
           +MA SDLW+KEYNEASKLGDDINGMISERSS PATGPE+QRHASAIRRKITILGTKVDGL
Sbjct: 1   MMAPSDLWIKEYNEASKLGDDINGMISERSSFPATGPESQRHASAIRRKITILGTKVDGL 60

Query: 95  ESLLLKLPVKQPL----------------SKVNQMASTLNMSNFANRNSLLGPDMKSADV 154
           +SLLLKLPVKQPL                SKV QMASTLNMSNFANR+SLLGP+MKSADV
Sbjct: 61  QSLLLKLPVKQPLSEKEINRRKDMLVQMRSKVKQMASTLNMSNFANRDSLLGPEMKSADV 120

Query: 155 MSKTAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQ 214
           MSKTAELDNQGLV        EQDEGLEKLEETI STKHIALAVNEEL LHTRLIDDLDQ
Sbjct: 121 MSKTAELDNQGLVGFQRKIMKEQDEGLEKLEETITSTKHIALAVNEELSLHTRLIDDLDQ 180

Query: 215 HVDVTDSRLAISLGCRANSSLVEIDMRVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIA 260
           HVDVTDS+LA                   KRLGI+NKRAKGSCSC GMLLSVVGIV LI 
Sbjct: 181 HVDVTDSQLA-------------------KRLGIMNKRAKGSCSCFGMLLSVVGIVVLIT 230

[Close]

BLAST of CmoCh16G009590 vs. NCBI nr
Match: gi|659096455|ref|XP_008449105.1| (PREDICTED: syntaxin-51-like [Cucumis melo])

HSP 1 Score: 324.3 bits (830), Expect = 1.9e-85
Identity = 187/244 (76.64%), Postives = 194/244 (79.51%), Query Frame = 1


Query: 36  MASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASAIRRKITILGTKVDGLE 95
           MA SDLW+KEYNEASKLGDDINGMISERSS PATGPE+QRHASAIRRKITILGTKVDGL+
Sbjct: 1   MAPSDLWIKEYNEASKLGDDINGMISERSSFPATGPESQRHASAIRRKITILGTKVDGLQ 60

Query: 96  SLLLKLPVKQPL----------------SKVNQMASTLNMSNFANRNSLLGPDMKSADVM 155
           SLL KLPVKQPL                S+V QMASTLNMSNFANR+SLLGP+MKS DVM
Sbjct: 61  SLLSKLPVKQPLSEKEINRRKDMLIQMRSEVKQMASTLNMSNFANRDSLLGPEMKSVDVM 120

Query: 156 SKTAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQH 215
           SKTAELDNQGLV        EQDEGLEKLEETI STKHIALAVNEELDLHTRLIDDLDQH
Sbjct: 121 SKTAELDNQGLVGFQRQIMKEQDEGLEKLEETIISTKHIALAVNEELDLHTRLIDDLDQH 180

Query: 216 VDVTDSRLAISLGCRANSSLVEIDMRVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAV 256
           VDV DSRLA                RVQKRLGI+NKRAKGSCSC GMLLSVVGIV LI V
Sbjct: 181 VDVIDSRLA----------------RVQKRLGIMNKRAKGSCSCFGMLLSVVGIVVLITV 228

[Close]

BLAST of CmoCh16G009590 vs. NCBI nr
Match: gi|567920934|ref|XP_006452473.1| (hypothetical protein CICLE_v10009364mg [Citrus clementina])

HSP 1 Score: 290.4 bits (742), Expect = 3.1e-75
Identity = 165/247 (66.80%), Postives = 189/247 (76.52%), Query Frame = 1


Query: 37  ASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASAIRRKITILGTKVDGLES 96
           ++SD W+KEYNEA KL DDINGMISERSS+PA+GPE+QRHASAIRRKITILGT++D L+S
Sbjct: 3   SASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQS 62

Query: 97  LLLKLPVKQPL----------------SKVNQMASTLNMSNFANRNSLLGPDMKSADVMS 156
           LL KLP KQP+                SKVNQMASTLNMSNFANR+SLLGP++KSADVM+
Sbjct: 63  LLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMN 122

Query: 157 KTAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHV 216
           +   LDNQGLV        EQDEGLEKLEET+ STKHIALAVNEELDLHTRLIDDLDQHV
Sbjct: 123 RATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHV 182

Query: 217 DVTDSRLAISLGCRANSSLVEIDMRVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVI 260
           DVTDSRL                 RVQK L ILNKR KG C+C+ MLL+V+GIV L+ VI
Sbjct: 183 DVTDSRL----------------RRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVI 233

[Close]

BLAST of CmoCh16G009590 vs. NCBI nr
Match: gi|734309705|gb|KHM99515.1| (Syntaxin-51 [Glycine soja])

HSP 1 Score: 287.3 bits (734), Expect = 2.6e-74
Identity = 165/246 (67.07%), Postives = 185/246 (75.20%), Query Frame = 1


Query: 35  VMASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASAIRRKITILGTKVDGL 94
           +MASSD W+KEYNEA KL DDINGMISERSS PA+GPE QRHASAIRRKITILGT++D L
Sbjct: 6   LMASSDSWMKEYNEAVKLADDINGMISERSSFPASGPETQRHASAIRRKITILGTRLDSL 65

Query: 95  ESLLLKLPVKQP-------------LSKVNQMASTLNMSNFANRNSLLGPDMKSADVMSK 154
           +SLL K+P K                +KVNQMASTLNMSNFANR+SLLGP++KS D MS+
Sbjct: 66  QSLLSKVPAKTEKEMNRRKDMLANLRTKVNQMASTLNMSNFANRDSLLGPEIKS-DAMSR 125

Query: 155 TAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHVD 214
           T  LDN GLV        EQD+GLEKLEET+ STKHIALAVNEEL+LHTRLIDDLDQHVD
Sbjct: 126 TVGLDNSGLVGLQRQIMKEQDDGLEKLEETVISTKHIALAVNEELNLHTRLIDDLDQHVD 185

Query: 215 VTDSRLAISLGCRANSSLVEIDMRVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVIW 260
           VTDSRL                 RVQK L +LNKR KG CSCL MLLSV+GIVGL+ VIW
Sbjct: 186 VTDSRL----------------RRVQKNLAVLNKRTKGGCSCLCMLLSVIGIVGLVVVIW 234

The following BLAST results are available for this feature:

BLAST of CmoCh16G009590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SYP52_ARATH	2.4e-64	57.49	Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1	[more]
SYP51_ARATH	3.5e-63	56.91	Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 SV=1	[more]

BLAST of CmoCh16G009590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4X9_CUCSA	1.2e-86	75.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G064180 PE=4 SV=1	[more]
A0A067F471_CITSI	2.1e-75	66.80	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026774mg PE=4 SV=1	[more]
V4TYR6_9ROSI	2.1e-75	66.80	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009364mg PE=4 SV=1	[more]
A0A0B2NR01_GLYSO	1.8e-74	67.07	Syntaxin-51 OS=Glycine soja GN=glysoja_006358 PE=4 SV=1	[more]
I1KYD6_SOYBN	2.4e-74	67.35	Uncharacterized protein OS=Glycine max GN=GLYMA_08G322600 PE=4 SV=1	[more]

BLAST of CmoCh16G009590 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79590.1	1.4e-65	57.49	syntaxin of plants 52	[more]
AT1G16240.1	2.0e-64	56.91	syntaxin of plants 51	[more]
AT1G16230.1	7.6e-32	45.95	Target SNARE coiled-coil domain protein	[more]
AT1G16225.1	3.9e-20	44.44	Target SNARE coiled-coil domain protein	[more]

BLAST of CmoCh16G009590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463737\|ref\|XP_004149588.1\|	1.8e-88	76.71	PREDICTED: syntaxin-52-like [Cucumis sativus]	[more]
gi\|700200936\|gb\|KGN56069.1\|	1.7e-86	75.50	hypothetical protein Csa_3G064180 [Cucumis sativus]	[more]
gi\|659096455\|ref\|XP_008449105.1\|	1.9e-85	76.64	PREDICTED: syntaxin-51-like [Cucumis melo]	[more]
gi\|567920934\|ref\|XP_006452473.1\|	3.1e-75	66.80	hypothetical protein CICLE_v10009364mg [Citrus clementina]	[more]
gi\|734309705\|gb\|KHM99515.1\|	2.6e-74	67.07	Syntaxin-51 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000727	T_SNARE_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G009590.1	CmoCh16G009590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000727	Target SNARE coiled-coil homology domain	PROFILE	PS50192	T_SNARE	coord: 147..199 score: 10
None	No IPR available	unknown	Coil	Coil	coord: 157..177 scor
None	No IPR available	GENE3D	G3DSA:1.20.5.110		coord: 151..200 score: 2.0
None	No IPR available	PANTHER	PTHR19957	SYNTAXIN	coord: 36..200 score: 5.8E-49coord: 217..258 score: 5.8
None	No IPR available	PANTHER	PTHR19957:SF119	SYNTAXIN-8	coord: 36..200 score: 5.8E-49coord: 217..258 score: 5.8
None	No IPR available	unknown	SSF58038	SNARE fusion complex	coord: 146..200 score: 1.92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G009590	Cucsa.042480	Cucumber (Gy14) v1	cgycmoB0027
CmoCh16G009590	CmaCh16G009240	Cucurbita maxima (Rimu)	cmacmoB323
CmoCh16G009590	Cla005361	Watermelon (97103) v1	cmowmB293
CmoCh16G009590	Csa3G064180	Cucumber (Chinese Long) v2	cmocuB315
CmoCh16G009590	MELO3C014154	Melon (DHL92) v3.5.1	cmomeB283
CmoCh16G009590	ClCG10G004910	Watermelon (Charleston Gray)	cmowcgB277
CmoCh16G009590	CSPI03G04550	Wild cucumber (PI 183967)	cmocpiB324
CmoCh16G009590	Lsi05G005430	Bottle gourd (USVL1VR-Ls)	cmolsiB306
CmoCh16G009590	Cp4.1LG14g07520	Cucurbita pepo (Zucchini)	cmocpeB308
CmoCh16G009590	MELO3C014154.2	Melon (DHL92) v3.6.1	cmomedB330
CmoCh16G009590	CsaV3_3G004560	Cucumber (Chinese Long) v3	cmocucB0378
CmoCh16G009590	Cla97C10G189160	Watermelon (97103) v2	cmowmbB321
CmoCh16G009590	Bhi11G000413	Wax gourd	cmowgoB0414
CmoCh16G009590	Carg22359	Silver-seed gourd	carcmoB0796

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G009590	Cucurbita moschata (Rifu)	cmocmoB295
CmoCh16G009590	Cucurbita maxima (Rimu)	cmacmoB808
CmoCh16G009590	Cucumber (Gy14) v2	cgybcmoB311
CmoCh16G009590	Silver-seed gourd	carcmoB0657