CmoCh16G009110 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G009110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	S-antigen protein
Location	Cmo_Chr16 : 5502765 .. 5504654 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCACACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCCCACAAGAAATTGAGCAAAAGGGAGGTCAAGAGGCCATGAAATTGAGCAAAAGGGAGGCCAAGAGGCCATTCCCTTGACTCGTACCGATCAGAACCTGACCCCACAAGAAATTGAGCAAAAGGGAGACCAAGAGGCCATTCCCTTGACTCGTACCGATCAGAACCTGACCACACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGCCATTCCCTTGACTCGTACCGATCAGAACCTGACCCCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTCCCTTGACTCGTACCGATCAGAACCTGACCCCACAAGAAATTGAGCAAAAGGGAGGCCAAGAGGCCATTCCCTTGACTCGTACCGATCAGAACCTGACCCCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTCCCTTGACTCGTACCGATCATAACCTGACCCCACAAGAAATTGAGCAAAAGGGAGGTCAAGAGGCCATGAAATTGAGCAAAAGGGAGGCCAAGAGGCCATTCCCTTGACTCGTACCGATCAGAACCTGACCCCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGCCATTCCCTTGACTCGTACCGATCATAACCTGACCCCACAAGAAATTGAGCAAAAGGGAGGCCAAGAGGCCATGAAATTGAGCAAAAGGGAGGCCAAGAGGCCATTCCCTTGACTCGTACCGATCAGAACCTGACCCCACAAGAAATTGAGCAAAAGGGAGACCAAGAGGCCATTCCCTTGACTCGTATCGATCAGAACCTGACCACACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTCCCTTGACTCGTACCGATCAGAACCTGACCCCACGAGAAATTGAGCAAAAGGGAGGCTAAGAGGCCATTCCCTTGACTCGTACCGATCAGAACCTGACCCCACGAGAAATTGAGCAAAAGGGAGACCAAGGAGTCATTCCCTTGACTCGTACCGATCAGAACCTGACCCCACGAGAAATTGAGCAAAAGGGAGACCAAGAGGCCATTCCCTTGACTCGTACCGATCAGAATCTAACCCACGAGAAATTGAGCAAAAGATAG

mRNA sequence

GGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCACACGAGAAATTGAGCAAAAGGGAGGCCAAGAGAACCTGACCCCACAAGAAATTGAGCAAAAGGGAGACCAAGAGGCCATTCCCTTGACTCGTACCGATCAGAACCTGACCACACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGCCATTCCCTTGACTCGTACCGATCAGAACCTGACCCCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTCCCTTGACTCGTACCGATCAGAACCTGACCCCACAAGAAATTGAGCAAAAGGGAGGCCAAGAGGCCATTCCCTTGACTCGTACCGATCAGAACCTGACCCCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGAACCTGACCCCACAAGAAATTGAGCAAAAGGGAGACCAAGAGGCCATTCCCTTGACTCGTATCGATCAGAACCTGACCACACGAGAAATTGAGCAAAAGGGAGGCCAAGAGAACCTGACCCCACGAGAAATTGAGCAAAAGGGAGACCAAGGAGTCATTCCCTTGACTCGTACCGATCAGAACCTGACCCCACGAGAAATTGAGCAAAAGGGAGACCAAGAGGCCATTCCCTTGACTCGTACCGATCAGAATCTAACCCACGAGAAATTGAGCAAAAGATAG

Coding sequence (CDS)

GGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCGCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTTCCTTGACTCGTACCGATCAGAACCTGACCACACGAGAAATTGAGCAAAAGGGAGGCCAAGAGAACCTGACCCCACAAGAAATTGAGCAAAAGGGAGACCAAGAGGCCATTCCCTTGACTCGTACCGATCAGAACCTGACCACACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGCCATTCCCTTGACTCGTACCGATCAGAACCTGACCCCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGGTCATTCCCTTGACTCGTACCGATCAGAACCTGACCCCACAAGAAATTGAGCAAAAGGGAGGCCAAGAGGCCATTCCCTTGACTCGTACCGATCAGAACCTGACCCCACGAGAAATTGAGCAAAAGGGAGGCCAAGAGAACCTGACCCCACAAGAAATTGAGCAAAAGGGAGACCAAGAGGCCATTCCCTTGACTCGTATCGATCAGAACCTGACCACACGAGAAATTGAGCAAAAGGGAGGCCAAGAGAACCTGACCCCACGAGAAATTGAGCAAAAGGGAGACCAAGGAGTCATTCCCTTGACTCGTACCGATCAGAACCTGACCCCACGAGAAATTGAGCAAAAGGGAGACCAAGAGGCCATTCCCTTGACTCGTACCGATCAGAATCTAACCCACGAGAAATTGAGCAAAAGATAG

Homology

[Close]

BLAST of CmoCh16G009110 vs. TrEMBL
Match: A0A0Y9WP03_PLABE (Uncharacterized protein OS=Plasmodium berghei GN=PBK173_000205100 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.4e-21
Identity = 84/260 (32.31%), Postives = 140/260 (53.85%), Query Frame = 1


Query: 1   GQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNL 60
           G  + SLT+   NL  ++ +Q GG  + SLT+   NL  ++ +Q GG  + SLT+   NL
Sbjct: 97  GNGLESLTKLFGNLGKKDGDQNGGSGLESLTKLFGNLGKKDGDQNGGSGLESLTKLLGNL 156

Query: 61  TAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVI 120
             ++ +Q GG  + SLT+   NL  ++ +Q GG  + SLT+   NL  ++ +Q GG  + 
Sbjct: 157 GKKDGDQNGGSGLESLTKLFGNLGKKDGDQNGGSGLESLTKLLGNLGKKDGDQNGGSGLE 216

Query: 121 SLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREI 180
           SLT+   NL  ++ +Q GG  + SLT+   NL  ++ +Q GG  + SLT+   NL  ++ 
Sbjct: 217 SLTKLFGNLGKKDGDQNGGSGLESLTKLLGNLGKKDGDQNGGSGLESLTKLLGNLGKKDG 276

Query: 181 EQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRT 240
           +Q GG  + SLT+   NL  ++ +Q     + SLT+   N +  E  +K G  +  L+  
Sbjct: 277 DQNGGSGLESLTKLFGNLGKKDGDQNEKNPLESLTKLFGNASKNEGNEKVGNLLDGLSSL 336

Query: 241 DQNLTTREIEQKGGQENLTP 261
             NL+    +++G + N  P
Sbjct: 337 IGNLS----KKRGDENNKNP 352

[Close]

BLAST of CmoCh16G009110 vs. TrEMBL
Match: A0A077XDQ5_PLABA (Uncharacterized protein OS=Plasmodium berghei (strain Anka) GN=PBANKA_092480 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.1e-21
Identity = 84/260 (32.31%), Postives = 140/260 (53.85%), Query Frame = 1


Query: 1   GQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNL 60
           G  + SLT+   NL  ++ +Q GG  + SLT+   NL  ++ +Q GG  + SLT+   NL
Sbjct: 97  GNGLESLTKLLGNLGKKDGDQNGGSGLESLTKLFGNLGKKDGDQNGGSGLESLTKLLGNL 156

Query: 61  TAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVI 120
             ++ +Q GG  + SLT+   NL  ++ +Q GG  + SLT+   NL  ++ +Q GG  + 
Sbjct: 157 GKKDGDQNGGSGLESLTKLFGNLGKKDGDQNGGSGLESLTKLLGNLGKKDGDQNGGSGLE 216

Query: 121 SLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREI 180
           SLT+   NL  ++ +Q GG  + SLT+   NL  ++ +Q GG  + SLT+   NL  ++ 
Sbjct: 217 SLTKLFGNLGKKDGDQNGGSGLESLTKLLGNLGKKDGDQNGGSGLESLTKLLGNLGKKDG 276

Query: 181 EQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRT 240
           +Q GG  + SLT+   NL  ++ +Q     + SLT+   N +  E  +K G  +  L+  
Sbjct: 277 DQNGGSGLESLTKLFGNLGKKDGDQNEKNPLESLTKLFGNASKNEGNEKVGNLLDGLSSL 336

Query: 241 DQNLTTREIEQKGGQENLTP 261
             NL+    +++G + N  P
Sbjct: 337 IGNLS----KKRGDENNKNP 352

[Close]

BLAST of CmoCh16G009110 vs. TrEMBL
Match: G3HG75_CRIGR (Nestin OS=Cricetulus griseus GN=I79_009594 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-14
Identity = 125/434 (28.80%), Postives = 213/434 (49.08%), Query Frame = 1


Query: 17  REIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISL 76
           +E  +  GQE+IS   T + L     E     E +  +  ++NL +    +K  Q  +  
Sbjct: 383 KEDPRMEGQELISPEGTLETLPFIGKEN----EEVMRSSEEKNLESLTAFKKESQPPLGC 442

Query: 77  TRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQ 136
              +     R IE++G + + SL   DQ  T R +E++ G+ + S+    Q L  R IE+
Sbjct: 443 PEEEVQRVERLIEKEGQESLRSLEEEDQE-TYRPLEKENGEPLKSVEEEVQ-LVERLIEK 502

Query: 137 KGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQ 196
           +G + + SL   DQ  T R +E++ G+ + S+   DQ L  R IE++G + + SL   DQ
Sbjct: 503 EGQESLRSLEEEDQE-TYRPLEKENGEPLKSVEEEDQ-LVERLIEKEGQESLRSLEEEDQ 562

Query: 197 NLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTTREIEQKGGQE 256
             T R +E++  Q           L  R IE++G + + SL   DQ  T R +E++  ++
Sbjct: 563 E-TYRPLEKEEDQ-----------LVERLIEKEGQESLGSLEEEDQE-TYRSLEKE--ED 622

Query: 257 NLTPQEIEQKGDQEAIPLTRTDQNLTTREIEQKGGQEAI-PLTRTDQNLTPREIEQKGGQ 316
            L  + IE++G QE++     ++  T R +E++  QE   PL +  +N  P +  ++  Q
Sbjct: 623 QLVERLIEKEG-QESLRFLEEEEQETYRPLEKEEDQETYRPLEK--ENGEPLKSVEEEVQ 682

Query: 317 EVIPLTRTDQNLTPQEIEQKGGQEAIPLTRTDQNLTPREIEQKGGQENLTPQEIEQKGDQ 376
            V  L   +   +   +E++  +   PL + DQ +    + +K GQE+L   E E   DQ
Sbjct: 683 LVERLIEKEGQESLGSLEEEDQETYRPLEKEDQKV--ERLIEKEGQESLGSLEEE---DQ 742

Query: 377 EAI-PLTRIDQNLTTREIEQKGGQENLTPREIEQKGDQGVIPLTRTDQNLTPREIEQKGD 436
           E   PL + DQ +    + +K  QE+L+   +E++  +   PL + D     R IE KGD
Sbjct: 743 ETYRPLEKEDQKV--ERLIEKEDQESLSC--LEEEEQETYRPLEKEDDQKFERLIE-KGD 780

Query: 437 QEAIP-LTRTDQNL 448
           QE++  L   DQ +
Sbjct: 803 QESLTCLEEEDQRI 780

[Close]

BLAST of CmoCh16G009110 vs. TrEMBL
Match: Q7RPL0_PLAYO (Uncharacterized protein (Fragment) OS=Plasmodium yoelii yoelii GN=PY01448 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-11
Identity = 72/257 (28.02%), Postives = 123/257 (47.86%), Query Frame = 1


Query: 1   GQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNL 60
           G  + +LT+   NL  ++ +Q GG  + +LT+   NL  ++ +Q GG  + +LT+   NL
Sbjct: 98  GNGLDNLTKLLGNLGKKDGDQSGGSGLENLTKLFGNLGKKDGDQSGGSGLENLTKLFGNL 157

Query: 61  TAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVI 120
             ++ +Q GG  +  LT+   NL  ++ +Q GG  +  LT+   N       Q GG  + 
Sbjct: 158 GKKDGDQSGGSGIEGLTKLFGNLGKKDGDQSGGSGIEGLTKLLGN-------QSGGSGLE 217

Query: 121 SLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREI 180
            LT+   +L  ++ +Q GG  +  LT+   N       Q GG  +  LT+   NL  ++ 
Sbjct: 218 GLTKLFGDLGKKDGDQSGGSGIEGLTKLLGN-------QSGGSGLEGLTKLFGNLGKKDG 277

Query: 181 EQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRT 240
           +Q GG  + +LT+   NL  ++ +Q     + SLT+   N    E  +K G  +  L+  
Sbjct: 278 DQSGGSGLENLTKLLGNLGKKDGDQNEKNPLESLTKLFGNGGKGEGNEKVGNLLDGLSSL 335

Query: 241 DQNLTTREIEQKGGQEN 258
             N +     +K G EN
Sbjct: 338 IGNFS-----KKSGDEN 335

[Close]

BLAST of CmoCh16G009110 vs. TrEMBL
Match: A0A078K4N4_9APIC (Uncharacterized protein OS=Plasmodium yoelii GN=PY17X_0926800 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-11
Identity = 72/257 (28.02%), Postives = 123/257 (47.86%), Query Frame = 1


Query: 1   GQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNL 60
           G  + +LT+   NL  ++ +Q GG  + +LT+   NL  ++ +Q GG  + +LT+   NL
Sbjct: 98  GNGLDNLTKLLGNLGKKDGDQSGGSGLENLTKLFGNLGKKDGDQSGGSGLENLTKLFGNL 157

Query: 61  TAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVI 120
             ++ +Q GG  +  LT+   NL  ++ +Q GG  +  LT+   N       Q GG  + 
Sbjct: 158 GKKDGDQSGGSGIEGLTKLFGNLGKKDGDQSGGSGIEGLTKLLGN-------QSGGSGLE 217

Query: 121 SLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREI 180
            LT+   +L  ++ +Q GG  +  LT+   N       Q GG  +  LT+   NL  ++ 
Sbjct: 218 GLTKLFGDLGKKDGDQSGGSGIEGLTKLLGN-------QSGGSGLEGLTKLFGNLGKKDG 277

Query: 181 EQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRT 240
           +Q GG  + +LT+   NL  ++ +Q     + SLT+   N    E  +K G  +  L+  
Sbjct: 278 DQSGGSGLENLTKLLGNLGKKDGDQNEKNPLESLTKLFGNGGKGEGNEKVGNLLDGLSSL 335

Query: 241 DQNLTTREIEQKGGQEN 258
             N +     +K G EN
Sbjct: 338 IGNFS-----KKSGDEN 335

[Close]

BLAST of CmoCh16G009110 vs. NCBI nr
Match: gi|991455939|emb|CXI43462.1| (conserved Plasmodium protein, unknown function [Plasmodium berghei])

HSP 1 Score: 111.7 bits (278), Expect = 3.4e-21
Identity = 84/260 (32.31%), Postives = 140/260 (53.85%), Query Frame = 1


Query: 1   GQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNL 60
           G  + SLT+   NL  ++ +Q GG  + SLT+   NL  ++ +Q GG  + SLT+   NL
Sbjct: 97  GNGLESLTKLFGNLGKKDGDQNGGSGLESLTKLFGNLGKKDGDQNGGSGLESLTKLLGNL 156

Query: 61  TAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVI 120
             ++ +Q GG  + SLT+   NL  ++ +Q GG  + SLT+   NL  ++ +Q GG  + 
Sbjct: 157 GKKDGDQNGGSGLESLTKLFGNLGKKDGDQNGGSGLESLTKLLGNLGKKDGDQNGGSGLE 216

Query: 121 SLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREI 180
           SLT+   NL  ++ +Q GG  + SLT+   NL  ++ +Q GG  + SLT+   NL  ++ 
Sbjct: 217 SLTKLFGNLGKKDGDQNGGSGLESLTKLLGNLGKKDGDQNGGSGLESLTKLLGNLGKKDG 276

Query: 181 EQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRT 240
           +Q GG  + SLT+   NL  ++ +Q     + SLT+   N +  E  +K G  +  L+  
Sbjct: 277 DQNGGSGLESLTKLFGNLGKKDGDQNEKNPLESLTKLFGNASKNEGNEKVGNLLDGLSSL 336

Query: 241 DQNLTTREIEQKGGQENLTP 261
             NL+    +++G + N  P
Sbjct: 337 IGNLS----KKRGDENNKNP 352

[Close]

BLAST of CmoCh16G009110 vs. NCBI nr
Match: gi|675226526|emb|CDS46725.1| (conserved Plasmodium protein, unknown function [Plasmodium berghei ANKA])

HSP 1 Score: 111.3 bits (277), Expect = 4.5e-21
Identity = 84/260 (32.31%), Postives = 140/260 (53.85%), Query Frame = 1


Query: 1   GQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNL 60
           G  + SLT+   NL  ++ +Q GG  + SLT+   NL  ++ +Q GG  + SLT+   NL
Sbjct: 97  GNGLESLTKLLGNLGKKDGDQNGGSGLESLTKLFGNLGKKDGDQNGGSGLESLTKLLGNL 156

Query: 61  TAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVI 120
             ++ +Q GG  + SLT+   NL  ++ +Q GG  + SLT+   NL  ++ +Q GG  + 
Sbjct: 157 GKKDGDQNGGSGLESLTKLFGNLGKKDGDQNGGSGLESLTKLLGNLGKKDGDQNGGSGLE 216

Query: 121 SLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREI 180
           SLT+   NL  ++ +Q GG  + SLT+   NL  ++ +Q GG  + SLT+   NL  ++ 
Sbjct: 217 SLTKLFGNLGKKDGDQNGGSGLESLTKLLGNLGKKDGDQNGGSGLESLTKLLGNLGKKDG 276

Query: 181 EQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRT 240
           +Q GG  + SLT+   NL  ++ +Q     + SLT+   N +  E  +K G  +  L+  
Sbjct: 277 DQNGGSGLESLTKLFGNLGKKDGDQNEKNPLESLTKLFGNASKNEGNEKVGNLLDGLSSL 336

Query: 241 DQNLTTREIEQKGGQENLTP 261
             NL+    +++G + N  P
Sbjct: 337 IGNLS----KKRGDENNKNP 352

[Close]

BLAST of CmoCh16G009110 vs. NCBI nr
Match: gi|743725479|ref|XP_010956698.1| (PREDICTED: trichohyalin [Camelus bactrianus])

HSP 1 Score: 88.2 bits (217), Expect = 4.0e-14
Identity = 108/390 (27.69%), Postives = 189/390 (48.46%), Query Frame = 1


Query: 66  EQKGGQEVISLTRTDQNLTAREI----EQKGGQEVISLTRTDQNLTAREIEQKGGQEVIS 125
           E++G QE  S  + D+   A ++    +QK  +      R ++ L   EIE+K       
Sbjct: 543 EREGEQERRSKQQRDRQFPAEDLLEREQQKEAKRRDRKFREEEQLLREEIEEKR------ 602

Query: 126 LTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIE 185
             R +++   RE EQ   QE     R ++ L+ +E ++K  +E   L + ++ L+ +E +
Sbjct: 603 -RRQEEDRKFREEEQLRRQERDRKFREEEQLSRQERDRKFREEERLLQQEEEQLSRQERD 662

Query: 186 QKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTD 245
           +K  +E + L + ++ L+ +E ++K  +E   L + ++ L  +E ++K  +E + L + +
Sbjct: 663 RKFREEQL-LQQEEEQLSRQERDRKFREEERLLQQEEEQLRRQERDRKFREEQL-LQQEE 722

Query: 246 QNLTTREIEQKGGQENLTPQEIEQKGDQEAIPLTRTDQNLTTREIEQKGGQEAIPLTRTD 305
           + L+ +E ++K  +E L  QE E+   QE     R ++ L  +E EQ   QE     R +
Sbjct: 723 EQLSRQERDRKFREEQLLQQEEERLRRQERDRKFRGEERLLQQEEEQLRRQERDRKFREE 782

Query: 306 QNLTPREIEQKGGQEVIPLTRTDQNLTPQEIEQKGGQEAIPLTRTDQNLTPREIEQKGGQ 365
           Q L  +E EQ   QE     R +Q L  QE EQ   QE     R ++ L  +E ++K  +
Sbjct: 783 Q-LLQQEEEQLSRQERDRKFREEQ-LLQQEEEQLSRQERDRKFREEEQLRRQERDRKFRE 842

Query: 366 ENLTPQEIEQKGDQEAIPLTRIDQNLTTREIEQKGGQENLTPREIEQKGDQGVIPLTRTD 425
           E L  QE EQ   QE     R ++ L  +E ++K  +E L  +E EQ   Q      R +
Sbjct: 843 EQLLQQEEEQLSRQERDRKFREEEQLRRQERDRKFREEQLLQQEEEQLSRQERDRKFREE 902

Query: 426 QNLTPREIEQKGDQEAIPLTRTDQNLTHEK 452
           + L  +E EQ   QE     R ++ L  ++
Sbjct: 903 ERLLQQEEEQLSRQERDRKFREEERLQRDR 921

[Close]

BLAST of CmoCh16G009110 vs. NCBI nr
Match: gi|672826424|gb|KFH71314.1| (hypothetical protein MVEG_01614 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 130/497 (26.16%), Postives = 197/497 (39.64%), Query Frame = 1


Query: 4   VISLTRTDQNLTAREIEQKGGQEV-----ISLTRTDQNLTAREIEQKGGQEVISLTRTDQ 63
           ++SLT  D    +  I +KG Q++     I+LT T  NL +  IE+ G Q +    +T+ 
Sbjct: 23  IMSLTMLDMQDCS--IGEKGAQDLAEALKINLTLTTLNLQSNSIEENGAQGLGEALKTNS 82

Query: 64  NLTAREIE-----QKGGQEVISLTRTDQNLTAREIE-----QKGGQEVISLTRTDQNLTA 123
            LT  ++E     +KG Q +    +T+  LT  ++E     +KG Q +    +T+  LT 
Sbjct: 83  TLTTLDLEDNSIGEKGAQALGEALKTNSTLTTLDLEDNSIGEKGAQALGEALKTNSTLTT 142

Query: 124 REIE-----QKGGQEV-----ISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIE 183
             +E     +KG Q +      + T T  NL    I     Q +    +T+  L   ++E
Sbjct: 143 LYLEDNSIGEKGAQALGEALNTNSTLTTLNLCGNSIGDNEAQALGEALKTNSTLITLDLE 202

Query: 184 -----QKGGQEVISLTRTDQNLT-----AREIEQKGGQEVISLTRTDQNLTAREIE---- 243
                + G Q +    +T+  LT        I +KG Q +    +T+  LT   +E    
Sbjct: 203 DNSIGENGAQALGEALKTNSTLTNLYLEKNSIGEKGAQALGEALKTNSTLTNLYLENNSI 262

Query: 244 -QKGGQEVISLTRTDQNLTAREIE-----QKGGQEVISLTRTDQNLTTREIEQKGGQENL 303
            +KG Q +    +T+  LT  +++     +KG Q +    +T+  LTT  +E        
Sbjct: 263 GRKGAQALGEALKTNSTLTTLDLQNNSIGEKGAQTLGETLKTNSTLTTLYLED------- 322

Query: 304 TPQEIEQKGDQEAIPLTRTDQNLTT-----REIEQKGGQEAIPLTRTDQNLTP-----RE 363
               I +KG Q      +T+  LTT       I   G Q      +T+  LT        
Sbjct: 323 --NSIGEKGAQALGEALKTNSTLTTLNLWHNSIGDNGAQALGETLKTNSTLTTLNLWGNS 382

Query: 364 IEQKGGQ---EVIPL--TRTDQNLTPQEIEQKGGQEAIPLTRTDQNLTPREIEQKGGQEN 423
           I  KG Q   EV+    T T  NL    I +KG Q      +T+  LT           N
Sbjct: 383 IGDKGAQALGEVLKTNSTLTTLNLRENSIGEKGAQALGEALKTNSTLTTL---------N 442

Query: 424 LTPQEIEQKGDQEAIPLTRIDQNLTTREIEQKGGQENLTPREIEQKGDQGV-----IPLT 436
           L    I   G Q      +I+  LTT          NL    I  KG Q +       LT
Sbjct: 443 LWGNSIGDNGAQALGEALKINSTLTTL---------NLRRNSIGDKGAQALGEALKTNLT 490

[Close]

BLAST of CmoCh16G009110 vs. NCBI nr
Match: gi|852766410|ref|XP_012877665.1| (PREDICTED: proprotein convertase subtilisin/kexin type 9-like [Dipodomys ordii])

HSP 1 Score: 80.9 bits (198), Expect = 6.4e-12
Identity = 101/473 (21.35%), Postives = 210/473 (44.40%), Query Frame = 1


Query: 11  DQNLTAREIEQKGGQEVISLTRTDQNLTA----REIEQKGGQEVISLTRTDQNLTAREIE 70
           D +    +++  G QE +  +R  + L       ++ + G QE ++ +R  +     E++
Sbjct: 44  DGSRAQAQLDGSGTQEQLDGSRAQEQLNGSRAQEQLHRSGAQEQLNGSRAQE-----ELD 103

Query: 71  QKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNL----TAREIEQKGGQEVISL 130
           +   QE +  +R  +     E+++ G QE +  +R  + L       E+++ G QE +  
Sbjct: 104 RSRAQEQLDRSRAQE-----ELDRSGAQEQLDGSRAQEQLDRSGAQEELDRSGAQEQL-- 163

Query: 131 TRTDQNLTAREIEQKGGQEVISLTRTDQNLTAREIEQKGGQEVISLTRTDQNLTA----R 190
              D +    ++ + G QE +  +R  + L      + G QE +  +R  + L       
Sbjct: 164 ---DGSGAQEQLHRFGAQEQLDGSRAQEQL-----HRSGAQEQLDGSRAQEQLDGSGAQE 223

Query: 191 EIEQKGGQEVISLTRTDQNLT-AREIEQKGG---QEVISLTRTDQNLTAREIEQKGGQEV 250
           +++  G QE +  +   + L  +R  EQ  G   QE ++ +R  + L      + G QE 
Sbjct: 224 QLDGSGAQEQLDGSGAQEQLNGSRAQEQLDGSRAQEQLNGSRAQEQL-----HRSGAQEQ 283

Query: 251 ISLTRTDQNLTTREIEQKGGQENL----TPQEIEQKGDQEAIPLTRTDQNL----TTREI 310
           ++ +R  +     E++  G QE L      +E++  G QE +  +R  + L       E+
Sbjct: 284 LNGSRAQE-----ELDGSGAQEQLDGSGAQEELDGSGAQEQLDGSRAQEELDRSGAQEEL 343

Query: 311 EQKGGQEAIPLTRTDQNL----TPREIEQKGGQEVIPLTRTDQNL----TPQEIEQKGGQ 370
           +Q G QE +  +   + L       E++    QE +  +R  + L      +E+++ G Q
Sbjct: 344 DQSGAQEQLDGSGAQEQLHRSGAQEELDGSRAQEQLDRSRAQEELYGSGAQEELDRSGAQ 403

Query: 371 EAIPLTRTDQNLTPREIEQKGGQENLTPQEIEQKGDQEAIPLTR----IDQNLTTREIEQ 430
           E +  +R  +     E+++ G QE+   +E+++ G QE +  +R    +D++ T  E+++
Sbjct: 404 EQLDRSRAQE-----ELDRSGAQESGAQEELDRSGAQEQLDGSRAQEELDRSGTQEELDR 463

Query: 431 KGGQENLTPREIEQKGDQGVIPLTRTDQNLTPREIEQKGDQEAIPLTRTDQNL 448
            G QE L     +++ + G     + D +    E+   G QE + ++   + L
Sbjct: 464 SGAQEQLNGSRAQEQLN-GSRAHEQLDGSGAQEELYGSGAQEELDVSGDQEEL 480

The following BLAST results are available for this feature:

BLAST of CmoCh16G009110 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh16G009110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0Y9WP03_PLABE	2.4e-21	32.31	Uncharacterized protein OS=Plasmodium berghei GN=PBK173_000205100 PE=4 SV=1	[more]
A0A077XDQ5_PLABA	3.1e-21	32.31	Uncharacterized protein OS=Plasmodium berghei (strain Anka) GN=PBANKA_092480 PE=...	[more]
G3HG75_CRIGR	1.3e-14	28.80	Nestin OS=Cricetulus griseus GN=I79_009594 PE=4 SV=1	[more]
Q7RPL0_PLAYO	1.0e-11	28.02	Uncharacterized protein (Fragment) OS=Plasmodium yoelii yoelii GN=PY01448 PE=4 S...	[more]
A0A078K4N4_9APIC	1.0e-11	28.02	Uncharacterized protein OS=Plasmodium yoelii GN=PY17X_0926800 PE=4 SV=1	[more]

BLAST of CmoCh16G009110 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh16G009110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|991455939\|emb\|CXI43462.1\|	3.4e-21	32.31	conserved Plasmodium protein, unknown function [Plasmodium berghei]	[more]
gi\|675226526\|emb\|CDS46725.1\|	4.5e-21	32.31	conserved Plasmodium protein, unknown function [Plasmodium berghei ANKA]	[more]
gi\|743725479\|ref\|XP_010956698.1\|	4.0e-14	27.69	PREDICTED: trichohyalin [Camelus bactrianus]	[more]
gi\|672826424\|gb\|KFH71314.1\|	1.2e-13	26.16	hypothetical protein MVEG_01614 [Mortierella verticillata NRRL 6337]	[more]
gi\|852766410\|ref\|XP_012877665.1\|	6.4e-12	21.35	PREDICTED: proprotein convertase subtilisin/kexin type 9-like [Dipodomys ordii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003359	PSI_Ycf4_assembly

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I
GO:0009579	thylakoid
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G009110.1	CmoCh16G009110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003359	Photosystem I Ycf4, assembly	PRODOM	PD003698		coord: 337..361 score: 2.0E-4coord: 382..440 score: 3.0E-5coord: 291..315 score: 2.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G009110	Cucurbita pepo (Zucchini)	cmocpeB301
CmoCh16G009110	Cucurbita pepo (Zucchini)	cmocpeB317
CmoCh16G009110	Bottle gourd (USVL1VR-Ls)	cmolsiB301
CmoCh16G009110	Bottle gourd (USVL1VR-Ls)	cmolsiB306
CmoCh16G009110	Cucumber (Gy14) v2	cgybcmoB303
CmoCh16G009110	Melon (DHL92) v3.6.1	cmomedB322
CmoCh16G009110	Silver-seed gourd	carcmoB0921
CmoCh16G009110	Silver-seed gourd	carcmoB1069
CmoCh16G009110	Cucumber (Chinese Long) v3	cmocucB0372
CmoCh16G009110	Watermelon (97103) v2	cmowmbB317
CmoCh16G009110	Watermelon (97103) v2	cmowmbB329
CmoCh16G009110	Wax gourd	cmowgoB0406
CmoCh16G009110	Wax gourd	cmowgoB0450
CmoCh16G009110	Cucurbita moschata (Rifu)	cmocmoB285
CmoCh16G009110	Cucurbita moschata (Rifu)	cmocmoB290
CmoCh16G009110	Cucumber (Gy14) v1	cgycmoB0075
CmoCh16G009110	Cucurbita maxima (Rimu)	cmacmoB324
CmoCh16G009110	Cucurbita maxima (Rimu)	cmacmoB700
CmoCh16G009110	Cucurbita maxima (Rimu)	cmacmoB704
CmoCh16G009110	Wild cucumber (PI 183967)	cmocpiB317
CmoCh16G009110	Cucumber (Chinese Long) v2	cmocuB309
CmoCh16G009110	Melon (DHL92) v3.5.1	cmomeB283
CmoCh16G009110	Melon (DHL92) v3.5.1	cmomeB293
CmoCh16G009110	Watermelon (Charleston Gray)	cmowcgB274
CmoCh16G009110	Watermelon (97103) v1	cmowmB289