CmoCh16G008960 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G008960
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Putative aminoacrylate peracid reductase RutC
Location	Cmo_Chr16 : 5204595 .. 5206074 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTAAACCTATGGCTTACTGCTCAGCAAACAGCTTCCAAATCCCGGCCACCAACGTCATTTCACGGCCGCGCACTGTCACTCCCTCTGTCGGCGCCTCCGTCTCCTTGTGGCGCCGCCCTTCTTCTATTCCATCTATTTCAAACCGCAACATGTCCTTCAAATGCCATGCCATTTCCAAGTGTCGTGGTACTACGCCCTCACTTACTTCCCCTCTCTCTCTCTCTCCCTGGTTCGTGAGAAAATTTGTTCAAACAAAATGTTTTTGTTCAAACAATATGTTTTTCAAATTTTTCCTTTTCTGAGACGGGATTTTCCATCTTTTGATTAGATGGGAGATATATAATGTTTTTTAATAATCGAATTAGGTTGATATTAGCCATTGACATTTATGAGTCTAATTTTGCTTAAATGCTGATGGACTTGTAATGCTTAAAAGCTTTGAATTTTTTATTAACACTTAACCACATAAATGGAGTGAAAGTAAAAAAAAGGCTATGAGTAAAAATTTATTTTTTCCTTCCAAATATTTTCCCATCGTAATATCAACCGCCATCAATATCTTATGTGACAGATATCATACCTATTGAAACCAAAGAGGCTCCAGAAGCATTGGGGCCATATTCTCAAGGCATCATTGCCAACAACTTTATATTTGTGTCTGGCTCCCTAGGTCTGATTCCCGAGGTAGCTTCATCACTTTATGATTTTATTTATTGATACGTTCTACTTTACATTCGTGTTTTAGAATTGGTGGTCGTGTATGCACTTTCCATGAGATCTAATTGAGTGTGTGTTTATGGTTTAATGCAGACAGGAGAATTAATTTCTGATCATGTTGGAGACCAACCGAGCAGGTATTATTTATTATTTTTTTTCATTAGATGTTGGTGTGCTTTGTAGGCCCAAAAGTTCTATAAAAAAAAAAAAAAAAAAATGTAATGAAATATGATTATGCAGGCCCTCAGAAATATAGGTGCAATATTGAGAGCTGGAGGTGCAGACTATAATAGAGTGGTTAAGACAACTATTATGTATGTAATCCTTTTTCGTATATTTTTTAGGTTTTTTTTGGAAAATGGTGTGTTTTTTTTTTTTTTGTCTTGAAACCTACATTTTTACAACAATTCTTTGTTGCAGGCTGGCTGATGTAGCAGACTTTGCATTAGTGAATGAAATTTATGCTCGATGTAAGTTCTTTTCTTTCATTTTTTTGTAATTTTTTTTGTGAAGAAAATGAAACTGAGAGGAGTTCTTGGTCTTTTTTACAGACTTTTCCGAGCAACCTTTTCCAGCTCGGTCAACATTTCAGGTTGGAGCGTTGCCCAAAAATGCCAAGATCGAAATCGATGCAATAGCTTTGGTTTAAACTGTAGTACCTCGACCTGACATGAGCACAGGTTGTGAAGTATCCGATATATTAGTATGGTTTCTTGCTGGTTGTTACCAACATTATTGTAATAATTTTATTATCTCATGGAC

mRNA sequence

TGTAAACCTATGGCTTACTGCTCAGCAAACAGCTTCCAAATCCCGGCCACCAACGTCATTTCACGGCCGCGCACTGTCACTCCCTCTGTCGGCGCCTCCGTCTCCTTGTGGCGCCGCCCTTCTTCTATTCCATCTATTTCAAACCGCAACATGTCCTTCAAATGCCATGCCATTTCCAAGTGTCGTGATATCATACCTATTGAAACCAAAGAGGCTCCAGAAGCATTGGGGCCATATTCTCAAGGCATCATTGCCAACAACTTTATATTTGTGTCTGGCTCCCTAGGTCTGATTCCCGAGACAGGAGAATTAATTTCTGATCATGTTGGAGACCAACCGAGCAGAAATATAGGTGCAATATTGAGAGCTGGAGGTGCAGACTATAATAGAGTGGTTAAGACAACTATTATGCTGGCTGATGTAGCAGACTTTGCATTAGTGAATGAAATTTATGCTCGATACTTTTCCGAGCAACCTTTTCCAGCTCGGTCAACATTTCAGGTTGGAGCGTTGCCCAAAAATGCCAAGATCGAAATCGATGCAATAGCTTTGGTTTAAACTGTAGTACCTCGACCTGACATGAGCACAGGTTGTGAAGTATCCGATATATTAGTATGGTTTCTTGCTGGTTGTTACCAACATTATTGTAATAATTTTATTATCTCATGGAC

Coding sequence (CDS)

ATGGCTTACTGCTCAGCAAACAGCTTCCAAATCCCGGCCACCAACGTCATTTCACGGCCGCGCACTGTCACTCCCTCTGTCGGCGCCTCCGTCTCCTTGTGGCGCCGCCCTTCTTCTATTCCATCTATTTCAAACCGCAACATGTCCTTCAAATGCCATGCCATTTCCAAGTGTCGTGATATCATACCTATTGAAACCAAAGAGGCTCCAGAAGCATTGGGGCCATATTCTCAAGGCATCATTGCCAACAACTTTATATTTGTGTCTGGCTCCCTAGGTCTGATTCCCGAGACAGGAGAATTAATTTCTGATCATGTTGGAGACCAACCGAGCAGAAATATAGGTGCAATATTGAGAGCTGGAGGTGCAGACTATAATAGAGTGGTTAAGACAACTATTATGCTGGCTGATGTAGCAGACTTTGCATTAGTGAATGAAATTTATGCTCGATACTTTTCCGAGCAACCTTTTCCAGCTCGGTCAACATTTCAGGTTGGAGCGTTGCCCAAAAATGCCAAGATCGAAATCGATGCAATAGCTTTGGTTTAA

Homology

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BLAST of CmoCh16G008960 vs. Swiss-Prot
Match: RIDA_ARATH (Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana GN=RIDA PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.0e-37
Identity = 88/155 (56.77%), Postives = 112/155 (72.26%), Query Frame = 1


Query: 29  ASVSLWRRPSSIPSISNRNMSFKCHAISKCRDIIPIETKEAPEALGPYSQGIIANNFIFV 88
           A VSL+R  S  P  ++ ++S    A S  ++++   T++AP ALGPYSQ I ANN +F+
Sbjct: 38  AGVSLFRMSSRSPPFASLSVS----ASSVKKEVV--STEKAPAALGPYSQAIKANNLVFL 97

Query: 89  SGSLGLIPETGELISDHVGDQPS---RNIGAILRAGGADYNRVVKTTIMLADVADFALVN 148
           SG LGLIPETG+ +S+ V DQ     +N+G IL+A GADY+ VVKTTIMLAD+ADF  VN
Sbjct: 98  SGVLGLIPETGKFVSESVEDQTEQVLKNMGEILKASGADYSSVVKTTIMLADLADFKTVN 157

Query: 149 EIYARYFSEQPFPARSTFQVGALPKNAKIEIDAIA 181
           EIYA+YF   P PARST+QV ALP NAKIEI+ IA
Sbjct: 158 EIYAKYF-PAPSPARSTYQVAALPLNAKIEIECIA 185

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BLAST of CmoCh16G008960 vs. Swiss-Prot
Match: YSD2_CAEEL (RutC family protein C23G10.2 OS=Caenorhabditis elegans GN=C23G10.2 PE=3 SV=3)

HSP 1 Score: 128.3 bits (321), Expect = 8.8e-29
Identity = 62/120 (51.67%), Postives = 87/120 (72.50%), Query Frame = 1


Query: 64  IETKEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGD--QPSRNIGAILRAG 123
           I +  AP A+GPYSQ + A N I++SGSLGL P+TG+L    V    Q  +N+G +L+A 
Sbjct: 44  ISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVEQTHQSLKNLGEVLKAA 103

Query: 124 GADYNRVVKTTIMLADVADFALVNEIYARYFSEQPFPARSTFQVGALPKNAKIEIDAIAL 182
           GADY  VVKTT++L ++ADFA VNE+Y +YF + P+PAR+ +QV ALPK   +EI+A+A+
Sbjct: 104 GADYGNVVKTTVLLQNIADFAAVNEVYGQYF-KSPYPARAAYQVAALPKGGLVEIEAVAI 162

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BLAST of CmoCh16G008960 vs. Swiss-Prot
Match: UK114_HUMAN (Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.6e-28
Identity = 59/121 (48.76%), Postives = 87/121 (71.90%), Query Frame = 1


Query: 64  IETKEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGD---QPSRNIGAILRA 123
           I T +AP A+GPYSQ ++ +  I++SG +G+ P +G+L+S  V +   Q  +N+G IL+A
Sbjct: 9   ISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKA 68

Query: 124 GGADYNRVVKTTIMLADVADFALVNEIYARYFSEQPFPARSTFQVGALPKNAKIEIDAIA 182
            G D+  VVKTT++LAD+ DF  VNEIY +YF    FPAR+ +QV ALPK ++IEI+A+A
Sbjct: 69  AGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSN-FPARAAYQVAALPKGSRIEIEAVA 128

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BLAST of CmoCh16G008960 vs. Swiss-Prot
Match: UK114_BOVIN (Ribonuclease UK114 OS=Bos taurus GN=HRSP12 PE=2 SV=3)

HSP 1 Score: 122.9 bits (307), Expect = 3.7e-27
Identity = 56/121 (46.28%), Postives = 86/121 (71.07%), Query Frame = 1


Query: 64  IETKEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQPSR---NIGAILRA 123
           I T +AP A+GPYSQ ++ +  I++SG LG+ P +G+L+   V ++  +   NIG IL+A
Sbjct: 9   ISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVAEEAKQALTNIGEILKA 68

Query: 124 GGADYNRVVKTTIMLADVADFALVNEIYARYFSEQPFPARSTFQVGALPKNAKIEIDAIA 182
            G D+  VVK T++LAD+ DF+ VN++Y +YF +  FPAR+ +QV ALPK  ++EI+AIA
Sbjct: 69  AGCDFTNVVKATVLLADINDFSTVNDVYKQYF-QSSFPARAAYQVAALPKGGRVEIEAIA 128

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BLAST of CmoCh16G008960 vs. Swiss-Prot
Match: UK114_CAPHI (Ribonuclease UK114 OS=Capra hircus GN=HRSP12 PE=1 SV=3)

HSP 1 Score: 121.7 bits (304), Expect = 8.3e-27
Identity = 56/121 (46.28%), Postives = 86/121 (71.07%), Query Frame = 1


Query: 64  IETKEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQPSR---NIGAILRA 123
           I T +AP A+GPYSQ ++ +  I++SG LG+ P +G+L+   V ++  +   NIG IL+A
Sbjct: 9   ISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVVEEAKQALTNIGEILKA 68

Query: 124 GGADYNRVVKTTIMLADVADFALVNEIYARYFSEQPFPARSTFQVGALPKNAKIEIDAIA 182
            G D+  VVK T++LAD+ DF+ VN++Y +YF +  FPAR+ +QV ALPK  ++EI+AIA
Sbjct: 69  AGCDFTNVVKATVLLADINDFSAVNDVYKQYF-QSSFPARAAYQVAALPKGGRVEIEAIA 128

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BLAST of CmoCh16G008960 vs. TrEMBL
Match: A0RZC7_CUCSA (Plastid-lipid associated protein OS=Cucumis sativus GN=CHRD PE=2 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.4e-65
Identity = 132/187 (70.59%), Postives = 155/187 (82.89%), Query Frame = 1


Query: 1   MAYCSANSFQIPATNVISRPRTVTPSVGASVSLWRRPS-SIPSISNRNMSFKCHAISKCR 60
           MA  +A++ QIPA+  I+R R++TPS G +VSLWRRPS +IPSIS+  MSFKCHAISKC 
Sbjct: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60

Query: 61  -DIIPIETKEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQPS---RNIG 120
            +II I T  APEALGPYSQGIIANN ++VSGSLGLIPETG+LISD VG+Q     +N+G
Sbjct: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120

Query: 121 AILRAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEQPFPARSTFQVGALPKNAKIE 180
           AILRAGGADY+RV+KTTIMLA+VADF LVNEIY +YF   P PARSTF  GALPKNAKIE
Sbjct: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIALV 183
           IDAIA++
Sbjct: 181 IDAIAVL 187

[Close]

BLAST of CmoCh16G008960 vs. TrEMBL
Match: A0A0A0L6A5_CUCSA (Plastid-lipid associated protein OS=Cucumis sativus GN=Csa_3G076580 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 7.0e-65
Identity = 132/187 (70.59%), Postives = 155/187 (82.89%), Query Frame = 1


Query: 1   MAYCSANSFQIPATNVISRPRTVTPSVGASVSLWRRPS-SIPSISNRNMSFKCHAISKCR 60
           MA  +A++ QIPA+  I+R R++TPS   +VSLWRRPS +IPSIS+R MSFKCHAISKC 
Sbjct: 1   MAMSAAHTLQIPASTAITRRRSITPSASTAVSLWRRPSPAIPSISSRQMSFKCHAISKCT 60

Query: 61  -DIIPIETKEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQPS---RNIG 120
            +II I T  APEALGPYSQGIIANN ++VSGSLGLIPETG+LISD VG+Q     +N+G
Sbjct: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120

Query: 121 AILRAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEQPFPARSTFQVGALPKNAKIE 180
           AILRAGGADY+RV+KTTIMLA+VADF LVNEIY +YF   P PARSTF  GALPKNAKIE
Sbjct: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNCPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIALV 183
           IDAIA++
Sbjct: 181 IDAIAVL 187

[Close]

BLAST of CmoCh16G008960 vs. TrEMBL
Match: W9R0G1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017847 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-39
Identity = 102/191 (53.40%), Postives = 128/191 (67.02%), Query Frame = 1


Query: 1   MAYCSANSFQIPATNVIS-RPRTVTPSVG------ASVSLWRRPSSIPSISNRNMSFKCH 60
           MA+C+A +F +PA  + + R RT   + G      A  +LWR  SS      R+  F C 
Sbjct: 1   MAWCAARTFNMPAAEMGALRGRTPLAAAGVGCASLAGSTLWRSSSS-----KRSAPFACL 60

Query: 61  AISK-CRDIIPIETKEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQPS- 120
            IS   R    ++T++AP ALGPYSQ I ANNF++VSG LGLIPETG+ ISD+V DQ   
Sbjct: 61  GISTDSRSKEAVKTEKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFISDNVEDQTEQ 120

Query: 121 --RNIGAILRAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEQPFPARSTFQVGALP 180
             +N+G IL+AGGA Y+ VVKTTIMLAD+ DF  VNEIYA+YF   P PARST+QV ALP
Sbjct: 121 VLKNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYF-PSPAPARSTYQVAALP 180

[Close]

BLAST of CmoCh16G008960 vs. TrEMBL
Match: C6T4P6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G291100 PE=2 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.7e-39
Identity = 100/191 (52.36%), Postives = 126/191 (65.97%), Query Frame = 1


Query: 2   AYCSANSFQIPAT--NVISRPRTVTPSVG----ASVSLWRRPSSIPSISNRNMSFKCHAI 61
           ++C A SFQIPA   + +    ++   VG    A  S WR  SS      R++ F C +I
Sbjct: 3   SWCGARSFQIPAMEDSALRNRASLAAGVGCLSVAGTSFWRSSSS----PKRSLPFTCLSI 62

Query: 62  SKCRDIIP-IETKEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQPS--- 121
           S    I   ++T+ AP ALGPYSQ I +NN IFVSG LGL+PETG+ +SD V DQ     
Sbjct: 63  SSDTRIKESVQTEGAPAALGPYSQAIKSNNLIFVSGVLGLVPETGKFVSDDVEDQTEQLL 122

Query: 122 RNIGAILRAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEQPFPARSTFQVGALPKN 181
           +N+G IL+AGGA Y+ VVKTTIMLAD+ DF  VNEIYA+YF   PFPARST+QV ALP +
Sbjct: 123 KNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYF-PSPFPARSTYQVAALPLD 182

Query: 182 AKIEIDAIALV 183
           AKIEI+ IA +
Sbjct: 183 AKIEIECIATI 188

[Close]

BLAST of CmoCh16G008960 vs. TrEMBL
Match: A0A0B2PWL0_GLYSO (Ribonuclease UK114-like protein OS=Glycine soja GN=glysoja_019895 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.6e-39
Identity = 98/189 (51.85%), Postives = 126/189 (66.67%), Query Frame = 1


Query: 2   AYCSANSFQIPAT--NVISRPRTVTPSVG----ASVSLWRRPSSIPSISNRNMSFKCHAI 61
           ++CS  SFQ+PA   + +    ++   VG    A  S WR  SS       ++SF C +I
Sbjct: 3   SWCSVRSFQVPAMEGSALRNRASLAARVGCLSVAGTSFWRSSSS----PKHSLSFTCLSI 62

Query: 62  S-KCRDIIPIETKEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQPS--- 121
           S + R    ++T+ AP ALGPYSQ I +NN +FVSG LGL+PETG+ +SD V DQ     
Sbjct: 63  SSETRIKENVQTEGAPAALGPYSQAIKSNNLLFVSGVLGLVPETGKFVSDDVEDQTEQLL 122

Query: 122 RNIGAILRAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEQPFPARSTFQVGALPKN 181
           +N+G IL+AGGA Y+ VVKTTIMLAD+ DF  VNEIYA+YF   PFPARST+QV ALP +
Sbjct: 123 KNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYF-PSPFPARSTYQVAALPLD 182

[Close]

BLAST of CmoCh16G008960 vs. TAIR10
Match: AT3G20390.1 (AT3G20390.1 endoribonuclease L-PSP family protein)

HSP 1 Score: 156.4 bits (394), Expect = 1.7e-38
Identity = 88/155 (56.77%), Postives = 112/155 (72.26%), Query Frame = 1


Query: 29  ASVSLWRRPSSIPSISNRNMSFKCHAISKCRDIIPIETKEAPEALGPYSQGIIANNFIFV 88
           A VSL+R  S  P  ++ ++S    A S  ++++   T++AP ALGPYSQ I ANN +F+
Sbjct: 38  AGVSLFRMSSRSPPFASLSVS----ASSVKKEVV--STEKAPAALGPYSQAIKANNLVFL 97

Query: 89  SGSLGLIPETGELISDHVGDQPS---RNIGAILRAGGADYNRVVKTTIMLADVADFALVN 148
           SG LGLIPETG+ +S+ V DQ     +N+G IL+A GADY+ VVKTTIMLAD+ADF  VN
Sbjct: 98  SGVLGLIPETGKFVSESVEDQTEQVLKNMGEILKASGADYSSVVKTTIMLADLADFKTVN 157

Query: 149 EIYARYFSEQPFPARSTFQVGALPKNAKIEIDAIA 181
           EIYA+YF   P PARST+QV ALP NAKIEI+ IA
Sbjct: 158 EIYAKYF-PAPSPARSTYQVAALPLNAKIEIECIA 185

[Close]

BLAST of CmoCh16G008960 vs. NCBI nr
Match: gi|525507246|ref|NP_001267661.1| (chordin [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 3.4e-65
Identity = 132/187 (70.59%), Postives = 155/187 (82.89%), Query Frame = 1


Query: 1   MAYCSANSFQIPATNVISRPRTVTPSVGASVSLWRRPS-SIPSISNRNMSFKCHAISKCR 60
           MA  +A++ QIPA+  I+R R++TPS G +VSLWRRPS +IPSIS+  MSFKCHAISKC 
Sbjct: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60

Query: 61  -DIIPIETKEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQPS---RNIG 120
            +II I T  APEALGPYSQGIIANN ++VSGSLGLIPETG+LISD VG+Q     +N+G
Sbjct: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120

Query: 121 AILRAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEQPFPARSTFQVGALPKNAKIE 180
           AILRAGGADY+RV+KTTIMLA+VADF LVNEIY +YF   P PARSTF  GALPKNAKIE
Sbjct: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIALV 183
           IDAIA++
Sbjct: 181 IDAIAVL 187

[Close]

BLAST of CmoCh16G008960 vs. NCBI nr
Match: gi|700200989|gb|KGN56122.1| (Plastid-lipid associated protein [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 1.0e-64
Identity = 132/187 (70.59%), Postives = 155/187 (82.89%), Query Frame = 1


Query: 1   MAYCSANSFQIPATNVISRPRTVTPSVGASVSLWRRPS-SIPSISNRNMSFKCHAISKCR 60
           MA  +A++ QIPA+  I+R R++TPS   +VSLWRRPS +IPSIS+R MSFKCHAISKC 
Sbjct: 1   MAMSAAHTLQIPASTAITRRRSITPSASTAVSLWRRPSPAIPSISSRQMSFKCHAISKCT 60

Query: 61  -DIIPIETKEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQPS---RNIG 120
            +II I T  APEALGPYSQGIIANN ++VSGSLGLIPETG+LISD VG+Q     +N+G
Sbjct: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120

Query: 121 AILRAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEQPFPARSTFQVGALPKNAKIE 180
           AILRAGGADY+RV+KTTIMLA+VADF LVNEIY +YF   P PARSTF  GALPKNAKIE
Sbjct: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNCPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIALV 183
           IDAIA++
Sbjct: 181 IDAIAVL 187

[Close]

BLAST of CmoCh16G008960 vs. NCBI nr
Match: gi|659126881|ref|XP_008463411.1| (PREDICTED: ribonuclease UK114-like [Cucumis melo])

HSP 1 Score: 249.2 bits (635), Expect = 5.5e-63
Identity = 132/187 (70.59%), Postives = 153/187 (81.82%), Query Frame = 1


Query: 1   MAYCSANSFQIPATNVISRPRTVTPSVGASVSLWRRP-SSIPSISNRNMSFKCHAISKCR 60
           MA  +A++ QIPA+  I+R R+ TPS G +VSLWRRP  +IPSIS+R MSFKC AISKC 
Sbjct: 1   MAMSAAHTLQIPASTAITRGRSFTPSAGTAVSLWRRPLPAIPSISSRQMSFKCLAISKCT 60

Query: 61  -DIIPIETKEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQPS---RNIG 120
            +I  I T  APEALGPYSQGIIANN ++VSGSLGLIP+TGELISD VG+Q     +N+G
Sbjct: 61  TEIKGIATDNAPEALGPYSQGIIANNILYVSGSLGLIPKTGELISDDVGEQTEQALKNVG 120

Query: 121 AILRAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEQPFPARSTFQVGALPKNAKIE 180
           AILRAGGADY+RVVKTTIMLA+VADF LVNEIYA+YF   P PARSTF  GALPKNAKIE
Sbjct: 121 AILRAGGADYDRVVKTTIMLANVADFTLVNEIYAKYFPNSPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIALV 183
           IDAIA++
Sbjct: 181 IDAIAVL 187

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BLAST of CmoCh16G008960 vs. NCBI nr
Match: gi|703083218|ref|XP_010092158.1| (hypothetical protein L484_017847 [Morus notabilis])

HSP 1 Score: 171.0 bits (432), Expect = 1.9e-39
Identity = 102/191 (53.40%), Postives = 128/191 (67.02%), Query Frame = 1


Query: 1   MAYCSANSFQIPATNVIS-RPRTVTPSVG------ASVSLWRRPSSIPSISNRNMSFKCH 60
           MA+C+A +F +PA  + + R RT   + G      A  +LWR  SS      R+  F C 
Sbjct: 1   MAWCAARTFNMPAAEMGALRGRTPLAAAGVGCASLAGSTLWRSSSS-----KRSAPFACL 60

Query: 61  AISK-CRDIIPIETKEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQPS- 120
            IS   R    ++T++AP ALGPYSQ I ANNF++VSG LGLIPETG+ ISD+V DQ   
Sbjct: 61  GISTDSRSKEAVKTEKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFISDNVEDQTEQ 120

Query: 121 --RNIGAILRAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEQPFPARSTFQVGALP 180
             +N+G IL+AGGA Y+ VVKTTIMLAD+ DF  VNEIYA+YF   P PARST+QV ALP
Sbjct: 121 VLKNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYF-PSPAPARSTYQVAALP 180

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BLAST of CmoCh16G008960 vs. NCBI nr
Match: gi|351725031|ref|NP_001237846.1| (uncharacterized protein LOC100527559 [Glycine max])

HSP 1 Score: 170.6 bits (431), Expect = 2.5e-39
Identity = 100/191 (52.36%), Postives = 126/191 (65.97%), Query Frame = 1


Query: 2   AYCSANSFQIPAT--NVISRPRTVTPSVG----ASVSLWRRPSSIPSISNRNMSFKCHAI 61
           ++C A SFQIPA   + +    ++   VG    A  S WR  SS      R++ F C +I
Sbjct: 3   SWCGARSFQIPAMEDSALRNRASLAAGVGCLSVAGTSFWRSSSS----PKRSLPFTCLSI 62

Query: 62  SKCRDIIP-IETKEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQPS--- 121
           S    I   ++T+ AP ALGPYSQ I +NN IFVSG LGL+PETG+ +SD V DQ     
Sbjct: 63  SSDTRIKESVQTEGAPAALGPYSQAIKSNNLIFVSGVLGLVPETGKFVSDDVEDQTEQLL 122

Query: 122 RNIGAILRAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEQPFPARSTFQVGALPKN 181
           +N+G IL+AGGA Y+ VVKTTIMLAD+ DF  VNEIYA+YF   PFPARST+QV ALP +
Sbjct: 123 KNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYF-PSPFPARSTYQVAALPLD 182

Query: 182 AKIEIDAIALV 183
           AKIEI+ IA +
Sbjct: 183 AKIEIECIATI 188

The following BLAST results are available for this feature:

BLAST of CmoCh16G008960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIDA_ARATH	3.0e-37	56.77	Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana GN=RIDA...	[more]
YSD2_CAEEL	8.8e-29	51.67	RutC family protein C23G10.2 OS=Caenorhabditis elegans GN=C23G10.2 PE=3 SV=3	[more]
UK114_HUMAN	2.6e-28	48.76	Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1	[more]
UK114_BOVIN	3.7e-27	46.28	Ribonuclease UK114 OS=Bos taurus GN=HRSP12 PE=2 SV=3	[more]
UK114_CAPHI	8.3e-27	46.28	Ribonuclease UK114 OS=Capra hircus GN=HRSP12 PE=1 SV=3	[more]

BLAST of CmoCh16G008960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0RZC7_CUCSA	2.4e-65	70.59	Plastid-lipid associated protein OS=Cucumis sativus GN=CHRD PE=2 SV=1	[more]
A0A0A0L6A5_CUCSA	7.0e-65	70.59	Plastid-lipid associated protein OS=Cucumis sativus GN=Csa_3G076580 PE=4 SV=1	[more]
W9R0G1_9ROSA	1.3e-39	53.40	Uncharacterized protein OS=Morus notabilis GN=L484_017847 PE=4 SV=1	[more]
C6T4P6_SOYBN	1.7e-39	52.36	Uncharacterized protein OS=Glycine max GN=GLYMA_02G291100 PE=2 SV=1	[more]
A0A0B2PWL0_GLYSO	6.6e-39	51.85	Ribonuclease UK114-like protein OS=Glycine soja GN=glysoja_019895 PE=4 SV=1	[more]

BLAST of CmoCh16G008960 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20390.1	1.7e-38	56.77	endoribonuclease L-PSP family protein	[more]

BLAST of CmoCh16G008960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|525507246\|ref\|NP_001267661.1\|	3.4e-65	70.59	chordin [Cucumis sativus]	[more]
gi\|700200989\|gb\|KGN56122.1\|	1.0e-64	70.59	Plastid-lipid associated protein [Cucumis sativus]	[more]
gi\|659126881\|ref\|XP_008463411.1\|	5.5e-63	70.59	PREDICTED: ribonuclease UK114-like [Cucumis melo]	[more]
gi\|703083218\|ref\|XP_010092158.1\|	1.9e-39	53.40	hypothetical protein L484_017847 [Morus notabilis]	[more]
gi\|351725031\|ref\|NP_001237846.1\|	2.5e-39	52.36	uncharacterized protein LOC100527559 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006056	RidA
IPR006175	YjgF/YER057c/UK114
IPR013813	Endoribonuclease L-PSP/chorismate mutase-like
IPR019897	RidA_CS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0019239	deaminase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G008960.1	CmoCh16G008960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006056	RidA family	TIGRFAMs	TIGR00004	TIGR00004	coord: 63..181 score: 5.4
IPR006175	YjgF/YER057c/UK114 family	PANTHER	PTHR11803	TRANSLATION INITIATION INHIBITOR	coord: 63..182 score: 4.1
IPR006175	YjgF/YER057c/UK114 family	PFAM	PF01042	Ribonuc_L-PSP	coord: 67..181 score: 1.6
IPR013813	Endoribonuclease L-PSP/chorismate mutase-like	GENE3D	G3DSA:3.30.1330.40		coord: 64..181 score: 6.0
IPR013813	Endoribonuclease L-PSP/chorismate mutase-like	unknown	SSF55298	YjgF-like	coord: 62..182 score: 1.73
IPR019897	RidA, conserved site	PROSITE	PS01094	UPF0076	coord: 158..176 scor
None	No IPR available	PANTHER	PTHR11803:SF13	RIBONUCLEASE UK114	coord: 63..182 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G008960	Wild cucumber (PI 183967)	cmocpiB317
CmoCh16G008960	Cucumber (Chinese Long) v2	cmocuB309
CmoCh16G008960	Melon (DHL92) v3.5.1	cmomeB283
CmoCh16G008960	Melon (DHL92) v3.5.1	cmomeB293
CmoCh16G008960	Watermelon (Charleston Gray)	cmowcgB274
CmoCh16G008960	Watermelon (97103) v1	cmowmB289
CmoCh16G008960	Cucurbita pepo (Zucchini)	cmocpeB312
CmoCh16G008960	Cucurbita pepo (Zucchini)	cmocpeB317
CmoCh16G008960	Bottle gourd (USVL1VR-Ls)	cmolsiB301
CmoCh16G008960	Cucumber (Gy14) v2	cgybcmoB303
CmoCh16G008960	Melon (DHL92) v3.6.1	cmomedB322
CmoCh16G008960	Silver-seed gourd	carcmoB0920
CmoCh16G008960	Silver-seed gourd	carcmoB0921
CmoCh16G008960	Cucumber (Chinese Long) v3	cmocucB0372
CmoCh16G008960	Watermelon (97103) v2	cmowmbB317
CmoCh16G008960	Wax gourd	cmowgoB0406
CmoCh16G008960	Cucurbita moschata (Rifu)	cmocmoB285
CmoCh16G008960	Cucurbita moschata (Rifu)	cmocmoB290
CmoCh16G008960	Cucumber (Gy14) v1	cgycmoB0075
CmoCh16G008960	Cucurbita maxima (Rimu)	cmacmoB324
CmoCh16G008960	Cucurbita maxima (Rimu)	cmacmoB700
CmoCh16G008960	Cucurbita maxima (Rimu)	cmacmoB704