CmoCh16G008780 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G008780
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(+)-delta-cadinene synthase
Location	Cmo_Chr16 : 4715424 .. 4715762 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATGGGTATTGCATAGCTCAGGATATTCCTTGATTGTAAACATTTCACTCATAGGCTTGGGTGACATAATAACAAATGAGGTAATTGAATGGTTTTCTAGAAGACCTAAAGTTATTAAAGCTGCATTAATAATTGCTAGACTCATGGATGACTTCATTTCCCACCAGGTATATATGGTTTACTATCCTTGGAAAGCAGCACAAACAAAATTGAATTTTTTTAAAGTAAAATGCATTTACTTACCTGTTTTTCTGTTTCAGTTTGAGCAACAGAGAGAACATGTTGCTTCAGCAGTTCAATGTTACATGAAACAATATGGTCGTTCAGAGGAATAA

mRNA sequence

ATGGAATGGGTATTGCATAGCTCAGGATATTCCTTGATTGTAAACATTTCACTCATAGGCTTGGGTGACATAATAACAAATGAGGTAATTGAATGGTTTTCTAGAAGACCTAAAGTTATTAAAGCTGCATTAATAATTGCTAGACTCATGGATGACTTCATTTCCCACCAGTTTGAGCAACAGAGAGAACATGTTGCTTCAGCAGTTCAATGTTACATGAAACAATATGGTCGTTCAGAGGAATAA

Coding sequence (CDS)

ATGGAATGGGTATTGCATAGCTCAGGATATTCCTTGATTGTAAACATTTCACTCATAGGCTTGGGTGACATAATAACAAATGAGGTAATTGAATGGTTTTCTAGAAGACCTAAAGTTATTAAAGCTGCATTAATAATTGCTAGACTCATGGATGACTTCATTTCCCACCAGTTTGAGCAACAGAGAGAACATGTTGCTTCAGCAGTTCAATGTTACATGAAACAATATGGTCGTTCAGAGGAATAA

Homology

[Close]

BLAST of CmoCh16G008780 vs. Swiss-Prot
Match: GCSY1_CUCME ((+)-gamma-cadinene synthase OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-23
Identity = 51/82 (62.20%), Postives = 68/82 (82.93%), Query Frame = 1


Query: 1   MEWVLHSSGYSLIVNISLIGLGD-IITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFE 60
           ME  L ++GY+++++IS +GLGD I+TNEV++W S  P++IKA+ II RLMDD  SH+FE
Sbjct: 417 MELALKTTGYTMLISISFLGLGDHIVTNEVLQWLSNGPQIIKASTIICRLMDDIASHKFE 476

Query: 61  QQREHVASAVQCYMKQYGRSEE 82
           Q+REHVASAV+CYMKQY  SEE
Sbjct: 477 QEREHVASAVECYMKQYDCSEE 498

[Close]

BLAST of CmoCh16G008780 vs. Swiss-Prot
Match: TPSGD_VITVI ((-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.8e-19
Identity = 40/81 (49.38%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 1   MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQ 60
           M   L +S YS++   S +G+GD +T E  +W   +PK+++A+ I+ RLMDD + H+FEQ
Sbjct: 404 MPVALVTSAYSMLATTSFVGMGDAVTKESFDWIFSKPKIVRASAIVCRLMDDMVFHKFEQ 463

Query: 61  QREHVASAVQCYMKQYGRSEE 82
           +R HVASAV+CYMKQ+G SE+
Sbjct: 464 KRGHVASAVECYMKQHGASEQ 484

[Close]

BLAST of CmoCh16G008780 vs. Swiss-Prot
Match: TPS2_RICCO (Probable terpene synthase 2 OS=Ricinus communis GN=TPS2 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.8e-19
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 1


Query: 1   MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQ 60
           M   L S  Y L+   S +G+GDI T EV +W S  PK+++ A II RLMDD +SH+FEQ
Sbjct: 399 MSIALVSCAYPLLTVTSFVGMGDIATKEVFDWASNDPKIVRVASIICRLMDDIVSHEFEQ 458

Query: 61  QREHVASAVQCYMKQYGRSEE 82
           +R H+AS+V+CYMKQ G SEE
Sbjct: 459 KRGHIASSVECYMKQNGVSEE 479

[Close]

BLAST of CmoCh16G008780 vs. Swiss-Prot
Match: TPSVS_VITVI (Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-18
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1


Query: 1   MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQ 60
           M   L SSGY L+   S +G+G+I T E  +W +  PK++ ++  I RLMDD  SH+FEQ
Sbjct: 404 MRVALASSGYCLLATTSFVGMGEIATKEAFDWVTSDPKIMSSSNFITRLMDDIKSHKFEQ 463

Query: 61  QREHVASAVQCYMKQYGRSEE 82
           +R HV SAV+CYMKQYG SEE
Sbjct: 464 KRGHVTSAVECYMKQYGVSEE 484

[Close]

BLAST of CmoCh16G008780 vs. Swiss-Prot
Match: SPIST_SANSP (Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-17
Identity = 39/81 (48.15%), Postives = 57/81 (70.37%), Query Frame = 1


Query: 1   MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQ 60
           M   L ++GY+ +  IS +G+G+I + E  +W   RP +I+A+  + RLMDD  SH+FEQ
Sbjct: 409 MSVALVTAGYTFLTTISYLGMGEIASKEAFDWLFSRPPIIEASESVCRLMDDMRSHEFEQ 468

Query: 61  QREHVASAVQCYMKQYGRSEE 82
           +R HVAS ++CYMKQYG +EE
Sbjct: 469 ERGHVASGIECYMKQYGVTEE 489

[Close]

BLAST of CmoCh16G008780 vs. TrEMBL
Match: A0A0A0L2I8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G097540 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-20
Identity = 50/82 (60.98%), Postives = 68/82 (82.93%), Query Frame = 1


Query: 1   MEWVLHSSGYSLIVNISLIGLGD-IITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFE 60
           ME  L+++GY+L+++IS +GLGD I+TNEV++W S  P++IKA+ II RLMDD  SH+FE
Sbjct: 404 MELALNTTGYTLLISISFLGLGDHIVTNEVLQWLSNGPQIIKASTIICRLMDDIASHKFE 463

Query: 61  QQREHVASAVQCYMKQYGRSEE 82
           Q+REHVASAV+ YM+QY  SEE
Sbjct: 464 QEREHVASAVESYMEQYDCSEE 485

[Close]

BLAST of CmoCh16G008780 vs. TrEMBL
Match: A0A061F6C8_THECC (Delta-cadinene synthase isozyme A, putative OS=Theobroma cacao GN=TCM_031107 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.6e-19
Identity = 44/77 (57.14%), Postives = 62/77 (80.52%), Query Frame = 1


Query: 5   LHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREH 64
           L SSGY ++   S +G+GDI+T E+ +W S  PK+++A+ +IARLMDD +SH+FEQ+R H
Sbjct: 371 LVSSGYIMVAITSFVGMGDIVTKEIFDWASNNPKIVRASSMIARLMDDIVSHKFEQERGH 430

Query: 65  VASAVQCYMKQYGRSEE 82
           VASA++CYMKQ+G SEE
Sbjct: 431 VASAIECYMKQHGVSEE 447

[Close]

BLAST of CmoCh16G008780 vs. TrEMBL
Match: A0A061F7C2_THECC (Delta-cadinene synthase isozyme A, putative OS=Theobroma cacao GN=TCM_031108 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.6e-19
Identity = 44/77 (57.14%), Postives = 62/77 (80.52%), Query Frame = 1


Query: 5   LHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREH 64
           L SSGY ++   S +G+GDI+T E+ +W S  PK+++A+ +IARLMDD +SH+FEQ+R H
Sbjct: 407 LVSSGYIMVAITSFVGMGDIVTKEIFDWASNNPKIVRASSMIARLMDDIVSHKFEQERGH 466

Query: 65  VASAVQCYMKQYGRSEE 82
           VASA++CYMKQ+G SEE
Sbjct: 467 VASAIECYMKQHGVSEE 483

[Close]

BLAST of CmoCh16G008780 vs. TrEMBL
Match: A0A076GBT5_POPTR (Terpene synthase OS=Populus trichocarpa GN=TPS9 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.4e-19
Identity = 46/77 (59.74%), Postives = 61/77 (79.22%), Query Frame = 1


Query: 5   LHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREH 64
           L SSGY L+  IS +G+GDI+T +  EW ++ PK++KAA +IARLMDD +SH+FEQ+R H
Sbjct: 410 LISSGYPLLTCISFVGMGDIVTKDAFEWLNKDPKIVKAASLIARLMDDIVSHKFEQERGH 469

Query: 65  VASAVQCYMKQYGRSEE 82
           VASAV+CYM Q+  SEE
Sbjct: 470 VASAVECYMNQHEVSEE 486

[Close]

BLAST of CmoCh16G008780 vs. TrEMBL
Match: B9I0I5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s14600g PE=3 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 4.4e-19
Identity = 46/77 (59.74%), Postives = 61/77 (79.22%), Query Frame = 1


Query: 5   LHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREH 64
           L SSGY L+  IS +G+GDI+T +  EW ++ PK++KAA +IARLMDD +SH+FEQ+R H
Sbjct: 410 LISSGYPLLTCISFVGMGDIVTKDAFEWLNKDPKIVKAASLIARLMDDIVSHKFEQERGH 469

Query: 65  VASAVQCYMKQYGRSEE 82
           VASAV+CYM Q+  SEE
Sbjct: 470 VASAVECYMNQHEVSEE 486

[Close]

BLAST of CmoCh16G008780 vs. TAIR10
Match: AT5G23960.1 (AT5G23960.1 terpene synthase 21)

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-13
Identity = 31/75 (41.33%), Postives = 50/75 (66.67%), Query Frame = 1


Query: 7   SSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVA 66
           SSGY  ++ ++ + + D+   +  EW S  PK+  A+ II+R  DD  S++FE +REHVA
Sbjct: 401 SSGYYALIAMTFVRMTDVAKLDAFEWLSSHPKIRVASEIISRFTDDISSYEFEHKREHVA 460

Query: 67  SAVQCYMKQYGRSEE 82
           + + CYM+Q+G S+E
Sbjct: 461 TGIDCYMQQFGVSKE 475

[Close]

BLAST of CmoCh16G008780 vs. TAIR10
Match: AT4G20200.1 (AT4G20200.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-09
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 1


Query: 19  IGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGR 78
           + +G + T E  EW   RPK+++   I  RLM+D + ++ +  R +V +AV CYMKQYG 
Sbjct: 469 MSMGKMATKEAFEWLKSRPKLVQYLSIKGRLMNDLMGYEDDMSRGYVTNAVNCYMKQYGV 528

Query: 79  SEE 82
           ++E
Sbjct: 529 TKE 531

[Close]

BLAST of CmoCh16G008780 vs. TAIR10
Match: AT4G20230.1 (AT4G20230.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-08
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 1


Query: 18  LIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYG 77
           L+ +G   T E  EW   RPK++++     RLM+D    + +  R +V +AV CYMKQYG
Sbjct: 470 LMSMGKTGTKEAFEWLKSRPKLVQSLCTKGRLMNDIAGFEDDMSRGYVVNAVNCYMKQYG 529

Query: 78  RSEE 82
            +E+
Sbjct: 530 VTEK 533

[Close]

BLAST of CmoCh16G008780 vs. TAIR10
Match: AT5G48110.1 (AT5G48110.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 4.1e-08
Identity = 28/81 (34.57%), Postives = 45/81 (55.56%), Query Frame = 1


Query: 1   MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQ 60
           ME  + + G  + V  + IG+G+    E  +W   RPK I+   + +RL DD  +++ E 
Sbjct: 425 MEVGIVTGGVDVTVAFAFIGMGEA-GKEAFDWIRSRPKFIQTIDLKSRLRDDVATYKDEM 484

Query: 61  QREHVASAVQCYMKQYGRSEE 82
            R  +A+ + CYMKQY  +EE
Sbjct: 485 ARGEIATGINCYMKQYKVTEE 504

[Close]

BLAST of CmoCh16G008780 vs. TAIR10
Match: AT4G20210.1 (AT4G20210.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 6.9e-08
Identity = 26/61 (42.62%), Postives = 36/61 (59.02%), Query Frame = 1


Query: 17  SLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQY 76
           +L+ +G I    V EW   RPK +KAA    RLM+D    + + +RE+V + V  YMKQY
Sbjct: 463 NLMCIGHIGDEGVYEWLKSRPKFLKAASTYGRLMNDIAGFEDDMKREYVITGVNTYMKQY 522

Query: 77  G 78
           G
Sbjct: 523 G 523

[Close]

BLAST of CmoCh16G008780 vs. NCBI nr
Match: gi|661902982|ref|NP_001284382.1| ((+)-gamma-cadinene synthase [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-21
Identity = 51/82 (62.20%), Postives = 68/82 (82.93%), Query Frame = 1


Query: 1   MEWVLHSSGYSLIVNISLIGLGD-IITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFE 60
           ME  L ++GY+++++IS +GLGD I+TNEV++W S  P++IKA+ II RLMDD  SH+FE
Sbjct: 417 MELALKTTGYTMLISISFLGLGDHIVTNEVLQWLSNGPQIIKASTIICRLMDDIASHKFE 476

Query: 61  QQREHVASAVQCYMKQYGRSEE 82
           Q+REHVASAV+CYMKQY  SEE
Sbjct: 477 QEREHVASAVECYMKQYDCSEE 498

[Close]

BLAST of CmoCh16G008780 vs. NCBI nr
Match: gi|778676208|ref|XP_011650545.1| (PREDICTED: (+)-gamma-cadinene synthase [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 3.3e-20
Identity = 50/82 (60.98%), Postives = 68/82 (82.93%), Query Frame = 1


Query: 1   MEWVLHSSGYSLIVNISLIGLGD-IITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFE 60
           ME  L+++GY+L+++IS +GLGD I+TNEV++W S  P++IKA+ II RLMDD  SH+FE
Sbjct: 404 MELALNTTGYTLLISISFLGLGDHIVTNEVLQWLSNGPQIIKASTIICRLMDDIASHKFE 463

Query: 61  QQREHVASAVQCYMKQYGRSEE 82
           Q+REHVASAV+ YM+QY  SEE
Sbjct: 464 QEREHVASAVESYMEQYDCSEE 485

[Close]

BLAST of CmoCh16G008780 vs. NCBI nr
Match: gi|590607726|ref|XP_007021067.1| (Delta-cadinene synthase isozyme A, putative [Theobroma cacao])

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-19
Identity = 44/77 (57.14%), Postives = 62/77 (80.52%), Query Frame = 1


Query: 5   LHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREH 64
           L SSGY ++   S +G+GDI+T E+ +W S  PK+++A+ +IARLMDD +SH+FEQ+R H
Sbjct: 407 LVSSGYIMVAITSFVGMGDIVTKEIFDWASNNPKIVRASSMIARLMDDIVSHKFEQERGH 466

Query: 65  VASAVQCYMKQYGRSEE 82
           VASA++CYMKQ+G SEE
Sbjct: 467 VASAIECYMKQHGVSEE 483

[Close]

BLAST of CmoCh16G008780 vs. NCBI nr
Match: gi|590607723|ref|XP_007021066.1| (Delta-cadinene synthase isozyme A, putative [Theobroma cacao])

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-19
Identity = 44/77 (57.14%), Postives = 62/77 (80.52%), Query Frame = 1


Query: 5   LHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREH 64
           L SSGY ++   S +G+GDI+T E+ +W S  PK+++A+ +IARLMDD +SH+FEQ+R H
Sbjct: 371 LVSSGYIMVAITSFVGMGDIVTKEIFDWASNNPKIVRASSMIARLMDDIVSHKFEQERGH 430

Query: 65  VASAVQCYMKQYGRSEE 82
           VASA++CYMKQ+G SEE
Sbjct: 431 VASAIECYMKQHGVSEE 447

[Close]

BLAST of CmoCh16G008780 vs. NCBI nr
Match: gi|566195498|ref|XP_002317018.2| (hypothetical protein POPTR_0011s14600g [Populus trichocarpa])

HSP 1 Score: 101.7 bits (252), Expect = 6.3e-19
Identity = 46/77 (59.74%), Postives = 61/77 (79.22%), Query Frame = 1


Query: 5   LHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREH 64
           L SSGY L+  IS +G+GDI+T +  EW ++ PK++KAA +IARLMDD +SH+FEQ+R H
Sbjct: 410 LISSGYPLLTCISFVGMGDIVTKDAFEWLNKDPKIVKAASLIARLMDDIVSHKFEQERGH 469

Query: 65  VASAVQCYMKQYGRSEE 82
           VASAV+CYM Q+  SEE
Sbjct: 470 VASAVECYMNQHEVSEE 486

The following BLAST results are available for this feature:

BLAST of CmoCh16G008780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GCSY1_CUCME	1.4e-23	62.20	(+)-gamma-cadinene synthase OS=Cucumis melo PE=1 SV=1	[more]
TPSGD_VITVI	4.8e-19	49.38	(-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1	[more]
TPS2_RICCO	4.8e-19	54.32	Probable terpene synthase 2 OS=Ricinus communis GN=TPS2 PE=3 SV=1	[more]
TPSVS_VITVI	1.8e-18	53.09	Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1	[more]
SPIST_SANSP	2.0e-17	48.15	Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1	[more]

BLAST of CmoCh16G008780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2I8_CUCSA	2.3e-20	60.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G097540 PE=3 SV=1	[more]
A0A061F6C8_THECC	2.6e-19	57.14	Delta-cadinene synthase isozyme A, putative OS=Theobroma cacao GN=TCM_031107 PE=...	[more]
A0A061F7C2_THECC	2.6e-19	57.14	Delta-cadinene synthase isozyme A, putative OS=Theobroma cacao GN=TCM_031108 PE=...	[more]
A0A076GBT5_POPTR	4.4e-19	59.74	Terpene synthase OS=Populus trichocarpa GN=TPS9 PE=2 SV=1	[more]
B9I0I5_POPTR	4.4e-19	59.74	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s14600g PE=3 SV=2	[more]

BLAST of CmoCh16G008780 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G23960.1	2.5e-13	41.33	terpene synthase 21	[more]
AT4G20200.1	2.2e-09	39.68	Terpenoid cyclases/Protein prenyltransferases superfamily protein	[more]
AT4G20230.1	1.4e-08	39.06	Terpenoid cyclases/Protein prenyltransferases superfamily protein	[more]
AT5G48110.1	4.1e-08	34.57	Terpenoid cyclases/Protein prenyltransferases superfamily protein	[more]
AT4G20210.1	6.9e-08	42.62	Terpenoid cyclases/Protein prenyltransferases superfamily protein	[more]

BLAST of CmoCh16G008780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|661902982\|ref\|NP_001284382.1\|	2.3e-21	62.20	(+)-gamma-cadinene synthase [Cucumis melo]	[more]
gi\|778676208\|ref\|XP_011650545.1\|	3.3e-20	60.98	PREDICTED: (+)-gamma-cadinene synthase [Cucumis sativus]	[more]
gi\|590607726\|ref\|XP_007021067.1\|	3.7e-19	57.14	Delta-cadinene synthase isozyme A, putative [Theobroma cacao]	[more]
gi\|590607723\|ref\|XP_007021066.1\|	3.7e-19	57.14	Delta-cadinene synthase isozyme A, putative [Theobroma cacao]	[more]
gi\|566195498\|ref\|XP_002317018.2\|	6.3e-19	59.74	hypothetical protein POPTR_0011s14600g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005630	Terpene_synthase_metal-bd
IPR008949	Isoprenoid_synthase_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0000287	magnesium ion binding
GO:0010333	terpene synthase activity
GO:0016829	lyase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045338	farnesyl diphosphate metabolic process
biological_process	GO:0051762	sesquiterpene biosynthetic process
biological_process	GO:0016114	terpenoid biosynthetic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0047461	(+)-delta-cadinene synthase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0010333	terpene synthase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G008780.1	CmoCh16G008780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005630	Terpene synthase, metal-binding domain	PFAM	PF03936	Terpene_synth_C	coord: 2..81 score: 2.2
IPR008949	Isoprenoid synthase domain	GENE3D	G3DSA:1.10.600.10		coord: 1..81 score: 6.5
IPR008949	Isoprenoid synthase domain	unknown	SSF48576	Terpenoid synthases	coord: 1..81 score: 4.32
None	No IPR available	PANTHER	PTHR31225	FAMILY NOT NAMED	coord: 1..81 score: 2.4
None	No IPR available	PANTHER	PTHR31225:SF15	ALPHA-HUMULENE/(-)-(E)-BETA-CARYOPHYLLENE SYNTHASE	coord: 1..81 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G008780	Lsi05G006560	Bottle gourd (USVL1VR-Ls)	cmolsiB305
CmoCh16G008780	Cp4.1LG14g00090	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G008780	MELO3C016594.2	Melon (DHL92) v3.6.1	cmomedB333
CmoCh16G008780	Cla97C10G190250	Watermelon (97103) v2	cmowmbB322
CmoCh16G008780	Bhi11G000589	Wax gourd	cmowgoB0421

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G008780	Cucumber (Gy14) v2	cgybcmoB080
CmoCh16G008780	Cucumber (Gy14) v2	cgybcmoB313
CmoCh16G008780	Silver-seed gourd	carcmoB0303
CmoCh16G008780	Silver-seed gourd	carcmoB0920
CmoCh16G008780	Cucumber (Chinese Long) v3	cmocucB0368
CmoCh16G008780	Cucumber (Chinese Long) v3	cmocucB0380
CmoCh16G008780	Wax gourd	cmowgoB0413
CmoCh16G008780	Cucurbita moschata (Rifu)	cmocmoB285
CmoCh16G008780	Cucumber (Gy14) v1	cgycmoB0117
CmoCh16G008780	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G008780	Cucurbita maxima (Rimu)	cmacmoB700
CmoCh16G008780	Wild cucumber (PI 183967)	cmocpiB326
CmoCh16G008780	Cucumber (Chinese Long) v2	cmocuB318
CmoCh16G008780	Melon (DHL92) v3.5.1	cmomeB285
CmoCh16G008780	Watermelon (Charleston Gray)	cmowcgB278
CmoCh16G008780	Watermelon (97103) v1	cmowmB300
CmoCh16G008780	Cucurbita pepo (Zucchini)	cmocpeB312