CmoCh16G008140 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGGAGAAAGACTGGTTATCACTGGTTGCTGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGAATGAAAGGTATGTAACTGTACTTTATGACTATAATAAATTCCTTATAAGACATTTTCAGCTTTAATACTACCGTTTCTTAAATTTTTTATGATTCGGTCCTATGCATCATCATCGCTGTATAATTGGGAAATAAATGTATTAAGAACTGCTTCACCATATGCCTCTTCCTCTTTTCCATATAGTGATAATAATTTGACACATAATTGTGAATGGAGCCAGGGAATGCGGTTTACTAGTTGTTCTAGCATGTTCTGTTTGAAAATATTTAGAAAAAAACAATGTAATTGAGGCGCTTGAATGACACTGTCTATGCACGAGGCTTGAATAATTTTGTGTGCTAAGTTACTCTTCCTTTATTTATTTTTTTACTTTAGGATGTATCTTCGTGTCCTGGGGGAATTTTTTAACATCGAGTTGACTTTAGTCCTCTTGTCTCATCTTTCATTATTATTTTCTTCAGAAAAACTTATATCTACTTGCCATGATGTCATTTTAATGAATTATTTGGCGTGTTGTTTTTCATGTGCATTCAAATGCTTTAATCTCTGGTTTGTTTCATGTCATCAATGACATCTTCCATGGAACACCTTGTAGTCTCTGCTTTCCCATTTCATTTTGTCACTTACTATAACTCGCAAATCCATACGTGAATTACACGTGACAAACTATTATTTATAAGGGTGTTCTAGTGCGTTGTAGATTCTTATATAAGACTTGTATCTCCTACGAAAATAGCTTAAACTAAACTCAATTCTAGCTTGAGAATTGTAGAATGTATCTTTTCAAAAATGTATTTCTTTTTTGTTTTCTCATAAAAAAATATGTAAACACTTTAACATACTGTCTTTGTCATGCTCGTATCATATATTTTTCAGAAGTAACTTGTCAGGCCCATGTTTCTTTGGGAAAAGACATAGTTTTATTTCACTTTCTTTATTTGGCTAATTTTTATTAACTCTCTTCAATAGATTCTTATTAAGTCAAATCTAAGCTATACTTTGGTGAGAATGCACTTCCTTTTTTCGTCTTTCCTTTATTTATTTCTACGAAGATCTGAATGGTGCTACAAGGAAATGGGATTACACGATAAGGTCTGGCTTCCTTTTGTACTGTGCATCACTCATTTTAGACTACGATTGTTGACAAAGAGGAGAACTTTTGTAATTTCTTAAGGAACCTGTAGGGGTGAACCTTTTTATGGAGTCATACAGTCAAAAGGATTTTTACCTCTTGTTCAGGCTAATATTTGAGGTGAGCAGCTGAGTGAAAGAAAGCCCTATGGATAATTTGACCTGTCTTTTGCCTTCTTTGCTTGAACCTGTTAGTTGGTTCTCAAATTAATGTAGCTTTTGTTCTTGAATTTATTTTTGCATGCCTTACTCCTTGTGAACTTGTAGGCACATTAATCTCCATGTTTTACGGATATCAGGAAATTAGCAGGATTCTTGTGGTGTTTTTAAGCATGTTATGATTTTAATCTTACTTTTGCGTTTTGCCATGTCTTGTTCATTTGAATTACACCTTGATCTACTAAAGTCATGCTTATGTGGCATATTAAGCCATTTTATTTTAGTTGCATTTGTGTATTTTTCAGCACATGACGATATTTAAATATGGTAAATATCCAGCAATTCCTCCATCGTTAAAGGAGGAAAATATAGTCATCAATTCTTAAGATGACTTCATTTATGCCAATAATATATTTTGGCCATGGTCTGAGACAAACATGACTCAGTTTGAGATTGGACATTTCAGGAAGAGGCTATTCCAGTTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAGTGGAAATGGTAAGCAGTCAAAAGAACAGTCTGCCACTCATAACAATGGCAGCAAAAGCAAGTCGAGTGGGAAGACGGTAAGTAATTTCCAAAGTTCATGATCAATTCAGCAATGTTCTTCATTGTTTTGCCGCAACCTCATACCGTACATGAATCCTGCTATTCTTTGCCGTCTTACAGCAGTCTCGGCAATTGGAGTCTCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAAGACGAAGATAGCGGGGAAGATGAGGAGGAAGAAGAAGACGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGACGAATTCTGGATTTGTTGCGATGTGTGCGAAAGATGGTTCCATGGAAAATGCGTGAAGATTACTCCCGCAAAGGCGGAGCATATCAAGCAGTACAAGTGTCCAAGTTGCAGTAACAAGAGGGCAAGGGTTTGAATTTAGGATCTTAAAGTTGGAGATAATTGCAAGGAACGAAAAAAGAAGACGAAGAAGAAGAAAGCAAGCAGGCAGCACGACTCCAGAACTTGTTATTACGATTATAAAGCTAAGTATGGTTGTTAAAATCAGTTGACAAAATTTGGTGAATTGGGATGAAATTTCAAGTTTTCCTACTCGTGTTATTCTTCTGTCCAATTCTAGAATTAGCGGTTTCTGTATGAATCCCCCCCCCCC ATGCAGGAGAAAGACTGGTTATCACTGGTTGCTGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGTTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAGTGGAAATGGTAAGCAGTCAAAAGAACAGTCTGCCACTCATAACAATGGCAGCAAAAGCAAGTCGAGTGGGAAGACGCAGTCTCGGCAATTGGAGTCTCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAAGACGAAGATAGCGGGGAAGATGAGGAGGAAGAAGAAGACGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGACGAATTCTGGATTTGTTGCGATGTGTGCGAAAGATGGTTCCATGGAAAATGCGTGAAGATTACTCCCGCAAAGGCGGAGCATATCAAGCAGTACAAGTGTCCAAGTTGCAGTAACAAGAGGGCAAGGGTTTGAATTTAGGATCTTAAAGTTGGAGATAATTGCAAGGAACGAAAAAAGAAGACGAAGAAGAAGAAAGCAAGCAGGCAGCACGACTCCAGAACTTGTTATTACGATTATAAAGCTAAGTATGGTTGTTAAAATCAGTTGACAAAATTTGGTGAATTGGGATGAAATTTCAAGTTTTCCTACTCGTGTTATTCTTCTGTCCAATTCTAGAATTAGCGGTTTCTGTATGAATCCCCCCCCCCC ATGCAGGAGAAAGACTGGTTATCACTGGTTGCTGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGTTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAGTGGAAATGGTAAGCAGTCAAAAGAACAGTCTGCCACTCATAACAATGGCAGCAAAAGCAAGTCGAGTGGGAAGACGCAGTCTCGGCAATTGGAGTCTCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAAGACGAAGATAGCGGGGAAGATGAGGAGGAAGAAGAAGACGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGACGAATTCTGGATTTGTTGCGATGTGTGCGAAAGATGGTTCCATGGAAAATGCGTGAAGATTACTCCCGCAAAGGCGGAGCATATCAAGCAGTACAAGTGTCCAAGTTGCAGTAACAAGAGGGCAAGGGTTTGA
BLAST of CmoCh16G008140 vs. Swiss-Prot
Match: ALFIN_MEDSA (PHD finger protein Alfin1 OS=Medicago sativa GN=ALFIN-1 PE=1 SV=1) HSP 1 Score: 278.9 bits (712), Expect = 3.8e-74 Identity = 136/172 (79.07%), Postives = 150/172 (87.21%), Query Frame = 1
BLAST of CmoCh16G008140 vs. Swiss-Prot
Match: ALFL6_ARATH (PHD finger protein ALFIN-LIKE 6 OS=Arabidopsis thaliana GN=AL6 PE=2 SV=1) HSP 1 Score: 267.3 bits (682), Expect = 1.1e-70 Identity = 137/173 (79.19%), Postives = 151/173 (87.28%), Query Frame = 1
BLAST of CmoCh16G008140 vs. Swiss-Prot
Match: ALFL7_ARATH (PHD finger protein ALFIN-LIKE 7 OS=Arabidopsis thaliana GN=AL7 PE=1 SV=1) HSP 1 Score: 266.5 bits (680), Expect = 2.0e-70 Identity = 128/169 (75.74%), Postives = 150/169 (88.76%), Query Frame = 1
BLAST of CmoCh16G008140 vs. Swiss-Prot
Match: ALFL8_ORYSI (PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. indica GN=OsI_35671 PE=3 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 2.2e-61 Identity = 121/174 (69.54%), Postives = 139/174 (79.89%), Query Frame = 1
BLAST of CmoCh16G008140 vs. Swiss-Prot
Match: ALFL8_ORYSJ (PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. japonica GN=Os11g0244800 PE=2 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 2.2e-61 Identity = 121/174 (69.54%), Postives = 139/174 (79.89%), Query Frame = 1
BLAST of CmoCh16G008140 vs. TrEMBL
Match: A0A0A0L6S9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G113340 PE=4 SV=1) HSP 1 Score: 332.8 bits (852), Expect = 2.5e-88 Identity = 164/172 (95.35%), Postives = 168/172 (97.67%), Query Frame = 1
BLAST of CmoCh16G008140 vs. TrEMBL
Match: F6KVS6_9ROSI (PHD finger family protein OS=Corylus heterophylla PE=2 SV=1) HSP 1 Score: 305.4 bits (781), Expect = 4.2e-80 Identity = 151/172 (87.79%), Postives = 162/172 (94.19%), Query Frame = 1
BLAST of CmoCh16G008140 vs. TrEMBL
Match: M5XFJ3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010294mg PE=4 SV=1) HSP 1 Score: 299.7 bits (766), Expect = 2.3e-78 Identity = 150/173 (86.71%), Postives = 159/173 (91.91%), Query Frame = 1
BLAST of CmoCh16G008140 vs. TrEMBL
Match: K9P2Z6_9ROSI (PHD5 OS=Morella rubra PE=2 SV=1) HSP 1 Score: 298.5 bits (763), Expect = 5.2e-78 Identity = 150/172 (87.21%), Postives = 161/172 (93.60%), Query Frame = 1
BLAST of CmoCh16G008140 vs. TrEMBL
Match: A0A0L9TT05_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g318700 PE=4 SV=1) HSP 1 Score: 297.7 bits (761), Expect = 8.8e-78 Identity = 147/172 (85.47%), Postives = 159/172 (92.44%), Query Frame = 1
BLAST of CmoCh16G008140 vs. TAIR10
Match: AT2G02470.1 (AT2G02470.1 alfin-like 6) HSP 1 Score: 267.3 bits (682), Expect = 6.5e-72 Identity = 137/173 (79.19%), Postives = 151/173 (87.28%), Query Frame = 1
BLAST of CmoCh16G008140 vs. TAIR10
Match: AT1G14510.1 (AT1G14510.1 alfin-like 7) HSP 1 Score: 266.5 bits (680), Expect = 1.1e-71 Identity = 128/169 (75.74%), Postives = 150/169 (88.76%), Query Frame = 1
BLAST of CmoCh16G008140 vs. TAIR10
Match: AT5G26210.1 (AT5G26210.1 alfin-like 4) HSP 1 Score: 223.8 bits (569), Expect = 8.2e-59 Identity = 119/175 (68.00%), Postives = 138/175 (78.86%), Query Frame = 1
BLAST of CmoCh16G008140 vs. TAIR10
Match: AT3G42790.1 (AT3G42790.1 alfin-like 3) HSP 1 Score: 217.6 bits (553), Expect = 5.9e-57 Identity = 107/171 (62.57%), Postives = 133/171 (77.78%), Query Frame = 1
BLAST of CmoCh16G008140 vs. TAIR10
Match: AT5G20510.1 (AT5G20510.1 alfin-like 5) HSP 1 Score: 215.3 bits (547), Expect = 2.9e-56 Identity = 110/176 (62.50%), Postives = 144/176 (81.82%), Query Frame = 1
BLAST of CmoCh16G008140 vs. NCBI nr
Match: gi|659102546|ref|XP_008452190.1| (PREDICTED: PHD finger protein ALFIN-LIKE 7 [Cucumis melo]) HSP 1 Score: 334.3 bits (856), Expect = 1.2e-88 Identity = 165/172 (95.93%), Postives = 169/172 (98.26%), Query Frame = 1
BLAST of CmoCh16G008140 vs. NCBI nr
Match: gi|449431906|ref|XP_004133741.1| (PREDICTED: PHD finger protein ALFIN-LIKE 7 [Cucumis sativus]) HSP 1 Score: 332.8 bits (852), Expect = 3.6e-88 Identity = 164/172 (95.35%), Postives = 168/172 (97.67%), Query Frame = 1
BLAST of CmoCh16G008140 vs. NCBI nr
Match: gi|333696835|gb|AEF79998.1| (PHD finger family protein [Corylus heterophylla]) HSP 1 Score: 305.4 bits (781), Expect = 6.1e-80 Identity = 151/172 (87.79%), Postives = 162/172 (94.19%), Query Frame = 1
BLAST of CmoCh16G008140 vs. NCBI nr
Match: gi|1012004365|ref|XP_015940106.1| (PREDICTED: PHD finger protein Alfin1 [Arachis duranensis]) HSP 1 Score: 303.1 bits (775), Expect = 3.0e-79 Identity = 148/172 (86.05%), Postives = 162/172 (94.19%), Query Frame = 1
BLAST of CmoCh16G008140 vs. NCBI nr
Match: gi|596200627|ref|XP_007223688.1| (hypothetical protein PRUPE_ppa010294mg [Prunus persica]) HSP 1 Score: 299.7 bits (766), Expect = 3.3e-78 Identity = 150/173 (86.71%), Postives = 159/173 (91.91%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|