CmoCh16G007840 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGATGGGTTTTCAATTTCTAATGGTTTTGGCTTTATTTGCCACTTCTTCAATGGCTCAGGCTCCCGGCGCTGCTCCGGCTCAGCCACCCACCACTCCGGCCGTTCCTCCGCCGTCTACTCCTCCCCCAGTAGTCGCTCCCGCCACCCCACCACCGGCTGCAACCCCACCTCCCGCCACTCCTCCACCAGCCGTGACCCCACCTCCTAGCCAACCACCATCATCCCCACCGACCCAACCACCAGCTTCACCTCCCACATCACCAACCCCACCACCAAAGGAAGGCCCGGCCTCATCTCCGACACCATCCTCTGCCTCGCCGCCATCACCACCATCGGAAGGAATGGGCCCGTCCGCTAGCCCTGGACCCAACTCGCCGCCACCTCCACCGGGAGATAACGGCGCAGCCACCGTTAGCCGGGGAGTGATGGTGGGCGGCGCTGTGGCGGGAGCTCTGTTGGCAATGGTGTTTGCTTAG ATGAAGATGGGTTTTCAATTTCTAATGGTTTTGGCTTTATTTGCCACTTCTTCAATGGCTCAGGCTCCCGGCGCTGCTCCGGCTCAGCCACCCACCACTCCGGCCGTTCCTCCGCCGTCTACTCCTCCCCCAGTAGTCGCTCCCGCCACCCCACCACCGGCTGCAACCCCACCTCCCGCCACTCCTCCACCAGCCGTGACCCCACCTCCTAGCCAACCACCATCATCCCCACCGACCCAACCACCAGCTTCACCTCCCACATCACCAACCCCACCACCAAAGGAAGGCCCGGCCTCATCTCCGACACCATCCTCTGCCTCGCCGCCATCACCACCATCGGAAGGAATGGGCCCGTCCGCTAGCCCTGGACCCAACTCGCCGCCACCTCCACCGGGAGATAACGGCGCAGCCACCGTTAGCCGGGGAGTGATGGTGGGCGGCGCTGTGGCGGGAGCTCTGTTGGCAATGGTGTTTGCTTAG ATGAAGATGGGTTTTCAATTTCTAATGGTTTTGGCTTTATTTGCCACTTCTTCAATGGCTCAGGCTCCCGGCGCTGCTCCGGCTCAGCCACCCACCACTCCGGCCGTTCCTCCGCCGTCTACTCCTCCCCCAGTAGTCGCTCCCGCCACCCCACCACCGGCTGCAACCCCACCTCCCGCCACTCCTCCACCAGCCGTGACCCCACCTCCTAGCCAACCACCATCATCCCCACCGACCCAACCACCAGCTTCACCTCCCACATCACCAACCCCACCACCAAAGGAAGGCCCGGCCTCATCTCCGACACCATCCTCTGCCTCGCCGCCATCACCACCATCGGAAGGAATGGGCCCGTCCGCTAGCCCTGGACCCAACTCGCCGCCACCTCCACCGGGAGATAACGGCGCAGCCACCGTTAGCCGGGGAGTGATGGTGGGCGGCGCTGTGGCGGGAGCTCTGTTGGCAATGGTGTTTGCTTAG
BLAST of CmoCh16G007840 vs. TrEMBL
Match: A0A0A0L0L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G098710 PE=4 SV=1) HSP 1 Score: 160.2 bits (404), Expect = 2.0e-36 Identity = 129/171 (75.44%), Postives = 138/171 (80.70%), Query Frame = 1
BLAST of CmoCh16G007840 vs. TrEMBL
Match: A0A0R0KYA8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G039700 PE=4 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 8.9e-08 Identity = 78/157 (49.68%), Postives = 99/157 (63.06%), Query Frame = 1
BLAST of CmoCh16G007840 vs. TrEMBL
Match: Q84QK1_LOTJA (Putative arabinagalactan protein OS=Lotus japonicus GN=agp1 PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.5e-07 Identity = 72/158 (45.57%), Postives = 91/158 (57.59%), Query Frame = 1
BLAST of CmoCh16G007840 vs. TrEMBL
Match: I1J528_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G025100 PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06 Identity = 74/153 (48.37%), Postives = 91/153 (59.48%), Query Frame = 1
BLAST of CmoCh16G007840 vs. TrEMBL
Match: V7CMA1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G149200g PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 2.9e-06 Identity = 70/156 (44.87%), Postives = 91/156 (58.33%), Query Frame = 1
BLAST of CmoCh16G007840 vs. TAIR10
Match: AT5G10430.1 (AT5G10430.1 arabinogalactan protein 4) HSP 1 Score: 47.8 bits (112), Expect = 7.5e-06 Identity = 71/157 (45.22%), Postives = 87/157 (55.41%), Query Frame = 1
BLAST of CmoCh16G007840 vs. NCBI nr
Match: gi|700198508|gb|KGN53666.1| (hypothetical protein Csa_4G098710 [Cucumis sativus]) HSP 1 Score: 160.2 bits (404), Expect = 2.9e-36 Identity = 129/171 (75.44%), Postives = 138/171 (80.70%), Query Frame = 1
BLAST of CmoCh16G007840 vs. NCBI nr
Match: gi|659111292|ref|XP_008455676.1| (PREDICTED: vegetative cell wall protein gp1 [Cucumis melo]) HSP 1 Score: 157.5 bits (397), Expect = 1.9e-35 Identity = 126/169 (74.56%), Postives = 137/169 (81.07%), Query Frame = 1
BLAST of CmoCh16G007840 vs. NCBI nr
Match: gi|778697564|ref|XP_011654350.1| (PREDICTED: classical arabinogalactan protein 9 [Cucumis sativus]) HSP 1 Score: 156.8 bits (395), Expect = 3.2e-35 Identity = 127/169 (75.15%), Postives = 136/169 (80.47%), Query Frame = 1
BLAST of CmoCh16G007840 vs. NCBI nr
Match: gi|947121437|gb|KRH69643.1| (hypothetical protein GLYMA_02G039700 [Glycine max]) HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07 Identity = 78/157 (49.68%), Postives = 99/157 (63.06%), Query Frame = 1
BLAST of CmoCh16G007840 vs. NCBI nr
Match: gi|30140331|emb|CAD89603.1| (putative arabinagalactan protein [Lotus japonicus]) HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07 Identity = 72/158 (45.57%), Postives = 91/158 (57.59%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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