CmoCh16G007840 (gene) Cucurbita moschata (Rifu)

NameCmoCh16G007840
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr16 : 3972779 .. 3973258 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATGGGTTTTCAATTTCTAATGGTTTTGGCTTTATTTGCCACTTCTTCAATGGCTCAGGCTCCCGGCGCTGCTCCGGCTCAGCCACCCACCACTCCGGCCGTTCCTCCGCCGTCTACTCCTCCCCCAGTAGTCGCTCCCGCCACCCCACCACCGGCTGCAACCCCACCTCCCGCCACTCCTCCACCAGCCGTGACCCCACCTCCTAGCCAACCACCATCATCCCCACCGACCCAACCACCAGCTTCACCTCCCACATCACCAACCCCACCACCAAAGGAAGGCCCGGCCTCATCTCCGACACCATCCTCTGCCTCGCCGCCATCACCACCATCGGAAGGAATGGGCCCGTCCGCTAGCCCTGGACCCAACTCGCCGCCACCTCCACCGGGAGATAACGGCGCAGCCACCGTTAGCCGGGGAGTGATGGTGGGCGGCGCTGTGGCGGGAGCTCTGTTGGCAATGGTGTTTGCTTAG

mRNA sequence

ATGAAGATGGGTTTTCAATTTCTAATGGTTTTGGCTTTATTTGCCACTTCTTCAATGGCTCAGGCTCCCGGCGCTGCTCCGGCTCAGCCACCCACCACTCCGGCCGTTCCTCCGCCGTCTACTCCTCCCCCAGTAGTCGCTCCCGCCACCCCACCACCGGCTGCAACCCCACCTCCCGCCACTCCTCCACCAGCCGTGACCCCACCTCCTAGCCAACCACCATCATCCCCACCGACCCAACCACCAGCTTCACCTCCCACATCACCAACCCCACCACCAAAGGAAGGCCCGGCCTCATCTCCGACACCATCCTCTGCCTCGCCGCCATCACCACCATCGGAAGGAATGGGCCCGTCCGCTAGCCCTGGACCCAACTCGCCGCCACCTCCACCGGGAGATAACGGCGCAGCCACCGTTAGCCGGGGAGTGATGGTGGGCGGCGCTGTGGCGGGAGCTCTGTTGGCAATGGTGTTTGCTTAG

Coding sequence (CDS)

ATGAAGATGGGTTTTCAATTTCTAATGGTTTTGGCTTTATTTGCCACTTCTTCAATGGCTCAGGCTCCCGGCGCTGCTCCGGCTCAGCCACCCACCACTCCGGCCGTTCCTCCGCCGTCTACTCCTCCCCCAGTAGTCGCTCCCGCCACCCCACCACCGGCTGCAACCCCACCTCCCGCCACTCCTCCACCAGCCGTGACCCCACCTCCTAGCCAACCACCATCATCCCCACCGACCCAACCACCAGCTTCACCTCCCACATCACCAACCCCACCACCAAAGGAAGGCCCGGCCTCATCTCCGACACCATCCTCTGCCTCGCCGCCATCACCACCATCGGAAGGAATGGGCCCGTCCGCTAGCCCTGGACCCAACTCGCCGCCACCTCCACCGGGAGATAACGGCGCAGCCACCGTTAGCCGGGGAGTGATGGTGGGCGGCGCTGTGGCGGGAGCTCTGTTGGCAATGGTGTTTGCTTAG
BLAST of CmoCh16G007840 vs. TrEMBL
Match: A0A0A0L0L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G098710 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.0e-36
Identity = 129/171 (75.44%), Postives = 138/171 (80.70%), Query Frame = 1

Query: 1   MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAP--ATPPPAATPP 60
           MKMGFQF+M LALFATS MAQAPGAAPAQPP+TPAVPPPSTPPP  +P  ATPPPA TPP
Sbjct: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPA-TPP 60

Query: 61  PATPPPAVTPPP-SQPPSSPPTQPPASPPTSPTP---------PPKEGPASSPTPSSASP 120
           PATPPPA TPPP S PPSSPP+QPPASPPTSP P         PPKEGP S PT   +SP
Sbjct: 61  PATPPPA-TPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT---SSP 120

Query: 121 PSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 160
           PSPP EG  P+ SPGP+ PPPPP  NGAA+VSRG+MVGGAVAGA LAMVFA
Sbjct: 121 PSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMVFA 166

BLAST of CmoCh16G007840 vs. TrEMBL
Match: A0A0R0KYA8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G039700 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.9e-08
Identity = 78/157 (49.68%), Postives = 99/157 (63.06%), Query Frame = 1

Query: 6   QFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPA-TPPPAATPPPATPPP 65
           Q L++L L A+S +AQAPGAAP QPPTT     PS PPP  APA  P P ATPPPATPPP
Sbjct: 7   QLLLILGLLASSCLAQAPGAAPTQPPTTT----PSPPPPRSAPAPAPTPPATPPPATPPP 66

Query: 66  AV-TPPPS-QPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSASPPSPPSEGMGPSASP 125
           A  TPPP+  PP++ PT  P + PT     P   PA+SP PS++SPP+P + G  P  + 
Sbjct: 67  AAATPPPATSPPATTPTPTPTAAPT-----PASSPATSPVPSASSPPAPGTAGPAPGPAG 126

Query: 126 GPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 160
           G   PPPP   + A + S+  + G A++G  +AMV A
Sbjct: 127 GAEPPPPP---SAAFSASKAFIAGSALSGIFVAMVLA 151

BLAST of CmoCh16G007840 vs. TrEMBL
Match: Q84QK1_LOTJA (Putative arabinagalactan protein OS=Lotus japonicus GN=agp1 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-07
Identity = 72/158 (45.57%), Postives = 91/158 (57.59%), Query Frame = 1

Query: 6   QFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPPA 65
           +  ++L L ATS +AQAPGAAP Q PTT   PPP+  P    PATPPPAATP P T PPA
Sbjct: 7   KLFLILGLLATSCVAQAPGAAPTQAPTTTPPPPPAAAP-APPPATPPPAATPAPTTTPPA 66

Query: 66  VTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSASPPSP----PSEGMGPSAS 125
            TP PS  P              P P P   P  +PTPS++SPP+P    P+ G GP+A 
Sbjct: 67  ATPAPSASP--------------PAPTPTASPTGAPTPSASSPPAPIPSGPASGPGPAAG 126

Query: 126 PGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 160
           PGPNS   PP  + A ++++ ++ G A+     AMV A
Sbjct: 127 PGPNSADTPPPPSAAFSLNQPIIAGTALVATFFAMVLA 149

BLAST of CmoCh16G007840 vs. TrEMBL
Match: I1J528_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G025100 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 74/153 (48.37%), Postives = 91/153 (59.48%), Query Frame = 1

Query: 6   QFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPPA 65
           Q  ++L L A+S +AQAPGAAP+QPPTT   PPP    P  AP TP   ATPPPATPPPA
Sbjct: 7   QLFLILGLLASSCLAQAPGAAPSQPPTTTPSPPPPRSAPAPAPTTP---ATPPPATPPPA 66

Query: 66  VTPPP--SQPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSASPPSPPSEGMGPSASPG 125
            TPPP  + PP++ PT  PA P  +PTP      AS P+PS    PSP S    P  SPG
Sbjct: 67  ATPPPAATPPPAATPTPAPAPPTAAPTPASSPA-ASPPSPSPTVTPSPTSPNTPPGPSPG 126

Query: 126 PNSPPPPPGDNGAATVSRGVMVGGAVAGALLAM 157
           P+    PP  + A + S+  +   A+AG  +AM
Sbjct: 127 PSGSAEPPPPSAAFSASKAFIATSALAGTFVAM 155

BLAST of CmoCh16G007840 vs. TrEMBL
Match: V7CMA1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G149200g PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-06
Identity = 70/156 (44.87%), Postives = 91/156 (58.33%), Query Frame = 1

Query: 6   QFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPPA 65
           Q  ++L L ATS +AQAPG AP QPPTT   PPP+  P V AP  P   ATPPP++PPPA
Sbjct: 7   QLFLILGLLATSCIAQAPGGAPTQPPTTTPPPPPAAAP-VPAPTAP---ATPPPSSPPPA 66

Query: 66  VTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSASPPSP--PSEGMGPSASPG 125
            TP P+              PT+PTP P   P+S+ +PS+ SP SP  P     PS++P 
Sbjct: 67  PTPAPT--------------PTAPTPAPASSPSSAASPSAESPGSPTSPPAPPAPSSAPS 126

Query: 126 PNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 160
           P+   PPP  + A +V +  + G A+AG  +AMV A
Sbjct: 127 PSVSEPPPSPSSAFSVGKAFVAGSALAGTFVAMVLA 144

BLAST of CmoCh16G007840 vs. TAIR10
Match: AT5G10430.1 (AT5G10430.1 arabinogalactan protein 4)

HSP 1 Score: 47.8 bits (112), Expect = 7.5e-06
Identity = 71/157 (45.22%), Postives = 87/157 (55.41%), Query Frame = 1

Query: 6   QFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAP---ATPPPAATPPPATP 65
           Q  ++LALFATS++AQAP       PT  A PPP+TPPPV  P   ATPPPAATP PATP
Sbjct: 7   QVFLMLALFATSALAQAPA------PTPTATPPPATPPPVATPPPVATPPPAATPAPATP 66

Query: 66  PPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSASPPSPPSEGMGPSASP 125
           PPA TP       +P T PP+  P+         PA  PT   ASPP+P    + PS++P
Sbjct: 67  PPAATP-------APATTPPSVAPS---------PADVPT---ASPPAPEGPTVSPSSAP 126

Query: 126 GPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 160
           GP+   P P    AA  ++    G A A  + A V A
Sbjct: 127 GPSDASPAP---SAAFSNKAFFAGTAFAAIMYAAVLA 135

BLAST of CmoCh16G007840 vs. NCBI nr
Match: gi|700198508|gb|KGN53666.1| (hypothetical protein Csa_4G098710 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 2.9e-36
Identity = 129/171 (75.44%), Postives = 138/171 (80.70%), Query Frame = 1

Query: 1   MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAP--ATPPPAATPP 60
           MKMGFQF+M LALFATS MAQAPGAAPAQPP+TPAVPPPSTPPP  +P  ATPPPA TPP
Sbjct: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPA-TPP 60

Query: 61  PATPPPAVTPPP-SQPPSSPPTQPPASPPTSPTP---------PPKEGPASSPTPSSASP 120
           PATPPPA TPPP S PPSSPP+QPPASPPTSP P         PPKEGP S PT   +SP
Sbjct: 61  PATPPPA-TPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT---SSP 120

Query: 121 PSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 160
           PSPP EG  P+ SPGP+ PPPPP  NGAA+VSRG+MVGGAVAGA LAMVFA
Sbjct: 121 PSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMVFA 166

BLAST of CmoCh16G007840 vs. NCBI nr
Match: gi|659111292|ref|XP_008455676.1| (PREDICTED: vegetative cell wall protein gp1 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.9e-35
Identity = 126/169 (74.56%), Postives = 137/169 (81.07%), Query Frame = 1

Query: 3   MGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAP--ATPPPAATPPPA 62
           MGFQF+M LALFATS MAQAPGAAPAQPP+TPAVPPPSTPPP  +P  ATPPPA TPPPA
Sbjct: 1   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPA-TPPPA 60

Query: 63  TPPPAVTPPP-SQPPSSPPTQPPASPPTSPTP---------PPKEGPASSPTPSSASPPS 122
           TPPPA TPPP S PPSSPP+QPPASPPTSP P         PPKEGP S PT   +SPPS
Sbjct: 61  TPPPA-TPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT---SSPPS 120

Query: 123 PPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 160
           PP EG  P++SPGP+ PPPPP  NGAA+VSRG+MVGGAVAGA LAM+FA
Sbjct: 121 PPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 164

BLAST of CmoCh16G007840 vs. NCBI nr
Match: gi|778697564|ref|XP_011654350.1| (PREDICTED: classical arabinogalactan protein 9 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 3.2e-35
Identity = 127/169 (75.15%), Postives = 136/169 (80.47%), Query Frame = 1

Query: 3   MGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAP--ATPPPAATPPPA 62
           MGFQF+M LALFATS MAQAPGAAPAQPP+TPAVPPPSTPPP  +P  ATPPPA TPPPA
Sbjct: 1   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPA-TPPPA 60

Query: 63  TPPPAVTPPP-SQPPSSPPTQPPASPPTSPTP---------PPKEGPASSPTPSSASPPS 122
           TPPPA TPPP S PPSSPP+QPPASPPTSP P         PPKEGP S PT   +SPPS
Sbjct: 61  TPPPA-TPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT---SSPPS 120

Query: 123 PPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 160
           PP EG  P+ SPGP+ PPPPP  NGAA+VSRG+MVGGAVAGA LAMVFA
Sbjct: 121 PPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMVFA 164

BLAST of CmoCh16G007840 vs. NCBI nr
Match: gi|947121437|gb|KRH69643.1| (hypothetical protein GLYMA_02G039700 [Glycine max])

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 78/157 (49.68%), Postives = 99/157 (63.06%), Query Frame = 1

Query: 6   QFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPA-TPPPAATPPPATPPP 65
           Q L++L L A+S +AQAPGAAP QPPTT     PS PPP  APA  P P ATPPPATPPP
Sbjct: 7   QLLLILGLLASSCLAQAPGAAPTQPPTTT----PSPPPPRSAPAPAPTPPATPPPATPPP 66

Query: 66  AV-TPPPS-QPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSASPPSPPSEGMGPSASP 125
           A  TPPP+  PP++ PT  P + PT     P   PA+SP PS++SPP+P + G  P  + 
Sbjct: 67  AAATPPPATSPPATTPTPTPTAAPT-----PASSPATSPVPSASSPPAPGTAGPAPGPAG 126

Query: 126 GPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 160
           G   PPPP   + A + S+  + G A++G  +AMV A
Sbjct: 127 GAEPPPPP---SAAFSASKAFIAGSALSGIFVAMVLA 151

BLAST of CmoCh16G007840 vs. NCBI nr
Match: gi|30140331|emb|CAD89603.1| (putative arabinagalactan protein [Lotus japonicus])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 72/158 (45.57%), Postives = 91/158 (57.59%), Query Frame = 1

Query: 6   QFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPPA 65
           +  ++L L ATS +AQAPGAAP Q PTT   PPP+  P    PATPPPAATP P T PPA
Sbjct: 7   KLFLILGLLATSCVAQAPGAAPTQAPTTTPPPPPAAAP-APPPATPPPAATPAPTTTPPA 66

Query: 66  VTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSASPPSP----PSEGMGPSAS 125
            TP PS  P              P P P   P  +PTPS++SPP+P    P+ G GP+A 
Sbjct: 67  ATPAPSASP--------------PAPTPTASPTGAPTPSASSPPAPIPSGPASGPGPAAG 126

Query: 126 PGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 160
           PGPNS   PP  + A ++++ ++ G A+     AMV A
Sbjct: 127 PGPNSADTPPPPSAAFSLNQPIIAGTALVATFFAMVLA 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L0L1_CUCSA2.0e-3675.44Uncharacterized protein OS=Cucumis sativus GN=Csa_4G098710 PE=4 SV=1[more]
A0A0R0KYA8_SOYBN8.9e-0849.68Uncharacterized protein OS=Glycine max GN=GLYMA_02G039700 PE=4 SV=1[more]
Q84QK1_LOTJA1.5e-0745.57Putative arabinagalactan protein OS=Lotus japonicus GN=agp1 PE=4 SV=1[more]
I1J528_SOYBN1.3e-0648.37Uncharacterized protein OS=Glycine max GN=GLYMA_01G025100 PE=4 SV=1[more]
V7CMA1_PHAVU2.9e-0644.87Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G149200g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G10430.17.5e-0645.22 arabinogalactan protein 4[more]
Match NameE-valueIdentityDescription
gi|700198508|gb|KGN53666.1|2.9e-3675.44hypothetical protein Csa_4G098710 [Cucumis sativus][more]
gi|659111292|ref|XP_008455676.1|1.9e-3574.56PREDICTED: vegetative cell wall protein gp1 [Cucumis melo][more]
gi|778697564|ref|XP_011654350.1|3.2e-3575.15PREDICTED: classical arabinogalactan protein 9 [Cucumis sativus][more]
gi|947121437|gb|KRH69643.1|1.3e-0749.68hypothetical protein GLYMA_02G039700 [Glycine max][more]
gi|30140331|emb|CAD89603.1|2.2e-0745.57putative arabinagalactan protein [Lotus japonicus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G007840.1CmoCh16G007840.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 21..33
score: 1.3E-10coord: 73..94
score: 1.3E-10coord: 36..52
score: 1.3E-10coord: 61..73
score: 1.3

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None