CmoCh16G006310 (gene) Cucurbita moschata (Rifu)

NameCmoCh16G006310
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Descriptionisoprenoid F
LocationCmo_Chr16 : 3104326 .. 3107630 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACCCCGTCCGGCCGTCCCTGTGCACCTGGATGGCGCCAACAGTACAACCAATCTTTCACTCAGCGCTTCGTTTCCCCTTTCCATGGCTGTCCCTGCCCTTTTCTTCGTCTCTCCCACCGATCCCTTTTTCTTTCGCAGAAGAAATCTGTGGTGTTTTTCGTCCTCTTCGCTGCCTTTCGTCTGTGTTGATCCGGACATGATCTTCACAGGTTGGAGCCTGGGTATCCATTGATTATTGGGGGAAGAGGCTGCTGCGAGGCTCATTCCGATGGTAATTTCTTTGGTTCTTGGTTGTTCTTCTCTTTTTTGTTCTTGTTGGTTGCTCTGCTGCTGAAGAAATGGGGAAATTTTTACCAAATTAGTTATGTGTGTTTTTTTGCTTTGAATTATTAGCTCAGTTTTGTTGTTGATTTAGGGCGGTGTTCTTCTTCACTGTGTGGTTGATTGATGCAATTTTGAGTGCTTTGAGGCTTCCTGATCTTTCCAAATTCAGATCCAAATGGAAGGGTGCTCCATCTTCTGTTTTTATTAAAGAAGCTGTAAGTGGTTGTGTATGTGGTAGCAAATTCTTGCGCACTTACCAAATTTTGCTTTGTTTATATATGAATCATGTCCTCTTTGACTTCACTTATTTAAATTGAGCCACTTGGTACACTGTACAGATGATCTATATGCGTGAATACATGATGTCACGATATCTTTTATGCTTGCATATGGCTCTCTTTAGGGAGTCCCTCAATAGCATAGTGGATAAACCAAGACACGTACTCTTTTCTGTTTGTTTTCTCAACTTTATTGGTTTATTTGATATGTATATGTCACATAGGAGTACTATTAAATTTATTAAAGAGATTTTATGAGGGTCATGTGATTCATGCCGGGTTCTTCCTCAGGAGTGAAATAGTGCTTGTGTCAAAAATGCATCTCAACAAATTGAGTACATTCATTATTATTATTATTATTATTATTATTTTTGTTTCCCGTTGGTACTGTAAGATCCCACATTGGTTGGAGAGGAGAATGAAACATTCCTTATAAGGGTGTAGAAACTTCTCTATAGTGGACCCGTTTTAAAACCTTGTGGGGAAGCCCAAAATGGAAAGTCCAAAGAGGACAATATCTACTAGTGGTGGGCTTGGGCGGTTACAAATAGTGTTAGAGCCAAACATTGGGCGGAGTGCTAGCAAGGATGTTGTCCCCTAAGGGGGTGGATTGTAAGATCCCACATTGGTTGGAGAGGGAACGAACTATTCCGAATTGTAAGATCCCACATTGGTTGGAGAGGGGAACGAACTATTCCAGATTGTAAGATCCCACATTGGTTGGAGAGGGGAACGACATATTTCTTATAAGAGTGTGGAAACCCCTCCCTGGTGGAGGCGTTTCAAAATCTTGAGGGGAATACCAGAAGGGAAAGCCCAAATGAAATATTCCTTATAAGCGTGTGGAAATCTCTCCCTAGTGGACGCATTTTAAAATCTTGAGGAGAAACCCGGAAGAAAAAGTCCAAAAAGGACAATATTGGGCAATATCTGCCCGCGGTGGGCTTGGAATGTTACAAATGGTATTAGAGTCAGACACCGAGCAGTGTGCCAGTAAGGACTCTGGCCCCAAGGGAGTGGGTTATGGGGAACAAAACATTCCTTATAAGGGTGTGGAAACCTCGCTCTTACAGGTACACTCCAGAGTTTAACTGACAAGAAAATGTTCATTGTATTATTAAAAGAAAGTTTCGAGTCTACTAAGTGGACCTTAGATATAGTTCTCATAACCAACTTCAATTGTACTGCATTAACTTGGACTGACCGTTCAATTGCATCTTCGTTCTATTATACCATTTTATGATTCCTCATTATAGCTTAATCTTCTAATTACATAGAGAGGATAAGATTGTGCAACTAGTCACGTAGCTGATGAAGTGATGTTGGTTGGGGTGGGGGAGTTGAGACGTATATCAGTAATGGAAGAATCAGTTTATAATAGAATTAGGCACTATAGATTTTTGGATTCATATTAAACATATTCTTACCTGAGACATAGATGCTTGGCCACAACCAGTGTGCCCCTGCTTTCTAGATTGGCCTTCACTCAAATGCTAGGATAAGTGACTTGATCCACTGTTTCGTTTTGCAAATGCTTAGACAATGCATTGGAGGTCGTTAATCAAAGAATACTATCTTCATTGGTATGAGGCCGTTTGGGGAATCCCAAAGCAAAGTCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCATCTAACATGGTATCAAAGCCATGCCCTAAACTTAGCCATGTCAATAGAATCCTCAAATGTCGAACAAAGGACTCCAAAAGAAAAAGAAGTTGAGGCTCCTCGAAGGCATGGTAAAAAATGACTTAAGACTCCAAAAGAAAAAGGAGTCGAGCCTCGATTAAGGGGAGACATACTTTGTTCGAGGGGAGGTGTTGGATGAAAGTCCCACGTTGGCTAATTTAGGGAATGATCATAGGTTTATAATCAATGAATACTCTCTCCATTGGTGTAAGGCCTTTTGGGGAACCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAACAGAGGTGATATTATATGGCCCTAGTGTAACTTATACATATCACAAACACTCAAGGGGGATGAACTCAAATCATGATGGTCATCTACCTAAGATTTAATATCCTTTAAGTTATCTCGGTAACTAAATGTAGTAGGTTTAGGGCAGCTATCGTGCAAGAGTTATTGAGGTGCATGCAAGGTGGTCTAGACATTGTGAGATAACGTTCTTAAAGAGTCCTATGGAAAGGGTAGTACCCCATGCTTTGTAGTTCTTCAATATTCGTTAAAGTAAAAGTTGAAGTTGTCGAGTTATGACGAAGTTCTTCACGTTTTCTTAAATATCAATCCGTGGTCGAACACATGGGAAAATAATGTGAAATAAGAAGAGAATAATAGGGGCATGAACTTTTGGACTTTCTGCTTGATACCATATTAAAGCATCAGTAAATTTGAAAATTTGTGCCTCTCCCATGAAAATACGAGGCAGTTGAATCCATCTAGTTAACCGAAGTCGAAATGAATAGTTCGAATTGAGTACATTTTAGATTCAAAGTTCGATTAATCTGATTGGTGACAGTGACATGTTTGGTGTTGTTTTTTATTGGTTCCTGGTGAGACTGATTTATGAAACTTGGATTCCACATTGAAACTTCAAAGGCCAAAGCTTAGCCAACACAAGGGAAG

mRNA sequence

ATGGGACCCCGTCCGGCCGTCCCTGTGCACCTGGATGGCGCCAACAGTACAACCAATCTTTCACTCAGCGCTTCGTTTCCCCTTTCCATGGCTGTCCCTGCCCTTTTCTTCGTTGGAGCCTGGGTATCCATTGATTATTGGGGGAAGAGGCTGCTGCGAGGCTCATTCCGATGGGCGGTGTTCTTCTTCACTGTGTGGTTGATTGATGCAATTTTGAGTGCTTTGAGGCTTCCTGATCTTTCCAAATTCAGATCCAAATGGAAGGGTGCTCCATCTTCTGTTTTTATTAAAGAAGCTGCCAAAGCTTAGCCAACACAAGGGAAG

Coding sequence (CDS)

ATGGGACCCCGTCCGGCCGTCCCTGTGCACCTGGATGGCGCCAACAGTACAACCAATCTTTCACTCAGCGCTTCGTTTCCCCTTTCCATGGCTGTCCCTGCCCTTTTCTTCGTTGGAGCCTGGGTATCCATTGATTATTGGGGGAAGAGGCTGCTGCGAGGCTCATTCCGATGGGCGGTGTTCTTCTTCACTGTGTGGTTGATTGATGCAATTTTGAGTGCTTTGAGGCTTCCTGATCTTTCCAAATTCAGATCCAAATGGAAGGGTGCTCCATCTTCTGTTTTTATTAAAGAAGCTGCCAAAGCTTAG
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016114 terpenoid biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G006310.1CmoCh16G006310.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G006310CmaCh16G005810Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G006310Cp4.1LG14g02340Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G006310Carg22216Silver-seed gourdcarcmoB0803
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G006310Cucurbita moschata (Rifu)cmocmoB238
CmoCh16G006310Cucurbita moschata (Rifu)cmocmoB285
CmoCh16G006310Cucumber (Gy14) v1cgycmoB0244
CmoCh16G006310Cucumber (Gy14) v1cgycmoB0825
CmoCh16G006310Cucurbita maxima (Rimu)cmacmoB290
CmoCh16G006310Cucurbita maxima (Rimu)cmacmoB700
CmoCh16G006310Wild cucumber (PI 183967)cmocpiB332
CmoCh16G006310Wild cucumber (PI 183967)cmocpiB338
CmoCh16G006310Cucumber (Chinese Long) v2cmocuB325
CmoCh16G006310Cucumber (Chinese Long) v2cmocuB330
CmoCh16G006310Melon (DHL92) v3.5.1cmomeB277
CmoCh16G006310Melon (DHL92) v3.5.1cmomeB294
CmoCh16G006310Watermelon (Charleston Gray)cmowcgB284
CmoCh16G006310Watermelon (Charleston Gray)cmowcgB294
CmoCh16G006310Watermelon (97103) v1cmowmB313
CmoCh16G006310Watermelon (97103) v1cmowmB301
CmoCh16G006310Cucurbita pepo (Zucchini)cmocpeB313
CmoCh16G006310Bottle gourd (USVL1VR-Ls)cmolsiB288
CmoCh16G006310Bottle gourd (USVL1VR-Ls)cmolsiB310
CmoCh16G006310Bottle gourd (USVL1VR-Ls)cmolsiB317
CmoCh16G006310Cucumber (Gy14) v2cgybcmoB309
CmoCh16G006310Cucumber (Gy14) v2cgybcmoB467
CmoCh16G006310Cucumber (Gy14) v2cgybcmoB596
CmoCh16G006310Melon (DHL92) v3.6.1cmomedB314
CmoCh16G006310Melon (DHL92) v3.6.1cmomedB336
CmoCh16G006310Silver-seed gourdcarcmoB1258
CmoCh16G006310Cucumber (Chinese Long) v3cmocucB0388
CmoCh16G006310Cucumber (Chinese Long) v3cmocucB0400
CmoCh16G006310Cucumber (Chinese Long) v3cmocucB0403
CmoCh16G006310Watermelon (97103) v2cmowmbB311
CmoCh16G006310Watermelon (97103) v2cmowmbB330
CmoCh16G006310Watermelon (97103) v2cmowmbB336
CmoCh16G006310Wax gourdcmowgoB0428