CmoCh16G004090 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G004090
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Protein TIC 214
Location	Cmo_Chr16 : 1882961 .. 1883318 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTAGGGATTTCTGACCACATTCTTCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGGTCATTGTGGTCGGACTCTATTATGGATTTCTGACCACATTTTCGATAGGGCCCTCTTATCTCTTCCTTTTTCGAGCTCGAGTTATGAAAGAAGGAACTGAAAAGAAAGTATCAGCAACAACAGGTTTTAATACGGGACAGTTCTTGATATTCATATTGATCTATTATGCACCTCTACATCTAGCATTGGGTAGATGTTATATTGATCTATTATGCACCTCTGCATCTAGCATTGGGTAG

mRNA sequence

ATGAAGATAATCAATTCGGTCGTTGTGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGGTCATTGTGGTCGGACTCTATTATGGATTTCTGACCACATTTTCGATAGGGCCCTCTTATCTCTTCCTTTTTCGAGCTCGAGTTATGAAAGAAGGAACTGAAAAGAAAGTATCAGCAACAACAGGTTTTAATACGGGACAGTTCTTGATATTCATATTGATCTATTATGCACCTCTACATCTAGCATTGGGTAGATGTTATATTGATCTATTATGCACCTCTGCATCTAGCATTGGGTAG

Coding sequence (CDS)

ATGAAGATAATCAATTCGGTCGTTGTGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGGTCATTGTGGTCGGACTCTATTATGGATTTCTGACCACATTTTCGATAGGGCCCTCTTATCTCTTCCTTTTTCGAGCTCGAGTTATGAAAGAAGGAACTGAAAAGAAAGTATCAGCAACAACAGGTTTTAATACGGGACAGTTCTTGATATTCATATTGATCTATTATGCACCTCTACATCTAGCATTGGGTAGATGTTATATTGATCTATTATGCACCTCTGCATCTAGCATTGGGTAG

Homology

[Close]

BLAST of CmoCh16G004090 vs. Swiss-Prot
Match: TI214_ILLOL (Protein TIC 214 OS=Illicium oligandrum GN=TIC214 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-26
Identity = 62/89 (69.66%), Postives = 73/89 (82.02%), Query Frame = 1


Query: 3  IINSVVVGPLISSFSELGLWKKEPVIVVGLYYGFLTTFSIGPSYLFLFRARVMKEGTEKK 62
          I+ S ++G L+S   ++       V+VVGLYYGFLTTFSIGPSYLFL RARVM+EGTEK+
Sbjct: 2  ILKSFLLGNLLSLCMKI----INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKE 61

Query: 63 VSATTGFNTGQFLIFILIYYAPLHLALGR 92
          VSATTGF TGQF++FI IYYAPLHLALGR
Sbjct: 62 VSATTGFITGQFMMFISIYYAPLHLALGR 86

[Close]

BLAST of CmoCh16G004090 vs. Swiss-Prot
Match: TI214_BUXMI (Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.1e-26
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 3  IINSVVVGPLISSFSELGLWKKEPVIVVGLYYGFLTTFSIGPSYLFLFRARVMKEGTEKK 62
          I+ S ++G L+S   ++       V+VVGLYYGFLTTFSIGPSYLFL RARVM+EGTEKK
Sbjct: 2  ILKSFLLGNLLSLCMKI----INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKK 61

Query: 63 VSATTGFNTGQFLIFILIYYAPLHLALGR 92
          VSATTGF TGQ ++FI IYYAPLHLALGR
Sbjct: 62 VSATTGFITGQLMMFISIYYAPLHLALGR 86

[Close]

BLAST of CmoCh16G004090 vs. Swiss-Prot
Match: TI214_NANDO (Protein TIC 214 OS=Nandina domestica GN=TIC214 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.1e-26
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 3  IINSVVVGPLISSFSELGLWKKEPVIVVGLYYGFLTTFSIGPSYLFLFRARVMKEGTEKK 62
          I NS ++G L+S   ++       V+VVGLYYGFLTTFSIGPSYLFL RARVM+EGTEK+
Sbjct: 2  IFNSFLLGNLLSLCMKI----INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKE 61

Query: 63 VSATTGFNTGQFLIFILIYYAPLHLALGR 92
          VSATTGF TGQ ++FI IYYAPLHLALGR
Sbjct: 62 VSATTGFITGQLMMFISIYYAPLHLALGR 86

[Close]

BLAST of CmoCh16G004090 vs. Swiss-Prot
Match: TI214_CALFG (Protein TIC 214 OS=Calycanthus floridus var. glaucus GN=TIC214 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.0e-26
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 1


Query: 3  IINSVVVGPLISSFSELGLWKKEPVIVVGLYYGFLTTFSIGPSYLFLFRARVMKEGTEKK 62
          I+ S ++G L+S   ++       V+VVGLYYGFLTTFSIGPSYLFL RARVM+EGTEK+
Sbjct: 2  ILKSFLLGNLLSLCMKI----INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKE 61

Query: 63 VSATTGFNTGQFLIFILIYYAPLHLALGRCY 94
          VSATTGF TGQ +IFI IYYAPLHLA+GR Y
Sbjct: 62 VSATTGFITGQLMIFISIYYAPLHLAMGRPY 88

[Close]

BLAST of CmoCh16G004090 vs. Swiss-Prot
Match: TI214_COFAR (Protein TIC 214 OS=Coffea arabica GN=TIC214 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.0e-26
Identity = 62/89 (69.66%), Postives = 71/89 (79.78%), Query Frame = 1


Query: 3  IINSVVVGPLISSFSELGLWKKEPVIVVGLYYGFLTTFSIGPSYLFLFRARVMKEGTEKK 62
          I  S ++G L+S   ++       V+VVGLYYGFLTTFSIGPSYLFL RARVM+EGTEKK
Sbjct: 2  IFQSFLLGNLVSLCMKI----INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKK 61

Query: 63 VSATTGFNTGQFLIFILIYYAPLHLALGR 92
          VSATTGF TGQ ++FI IYYAPLHLALGR
Sbjct: 62 VSATTGFITGQLMMFISIYYAPLHLALGR 86

[Close]

BLAST of CmoCh16G004090 vs. TrEMBL
Match: D3WEV7_9ROSI (Putative RF1 protein OS=Oxalis latifolia GN=ycf1 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 9.0e-25
Identity = 63/89 (70.79%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 3  IINSVVVGPLISSFSELGLWKKEPVIVVGLYYGFLTTFSIGPSYLFLFRARVMKEGTEKK 62
          I+ S ++G L+S   +L       V+VVGLYYGFLTTFSIGPSYLFL RARVM+EGTEKK
Sbjct: 2  ILKSFILGNLVSFSMKL----INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKK 61

Query: 63 VSATTGFNTGQFLIFILIYYAPLHLALGR 92
          VSATTGF TGQ ++FI IYYAPLHLALGR
Sbjct: 62 VSATTGFITGQLMMFISIYYAPLHLALGR 86

[Close]

BLAST of CmoCh16G004090 vs. TrEMBL
Match: G0YDQ7_9ROSI (Hypothetical chloroplast RF1 (Fragment) OS=Oxalis latifolia GN=ycf1 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 9.0e-25
Identity = 63/89 (70.79%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 3  IINSVVVGPLISSFSELGLWKKEPVIVVGLYYGFLTTFSIGPSYLFLFRARVMKEGTEKK 62
          I+ S ++G L+S   +L       V+VVGLYYGFLTTFSIGPSYLFL RARVM+EGTEKK
Sbjct: 2  ILKSFILGNLVSFSMKL----INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKK 61

Query: 63 VSATTGFNTGQFLIFILIYYAPLHLALGR 92
          VSATTGF TGQ ++FI IYYAPLHLALGR
Sbjct: 62 VSATTGFITGQLMMFISIYYAPLHLALGR 86

[Close]

BLAST of CmoCh16G004090 vs. TrEMBL
Match: A0A0S2IF45_9ROSI (Ycf1 OS=Cucurbita foetidissima GN=ycf1 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-24
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 3  IINSVVVGPLISSFSELGLWKKEPVIVVGLYYGFLTTFSIGPSYLFLFRARVMKEGTEKK 62
          I+ S ++G L+S   ++       V+VVGLYYGFLTTFSIGPSYLFL RARVM+EGTEKK
Sbjct: 2  ILKSFILGNLVSLCMKI----INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKK 61

Query: 63 VSATTGFNTGQFLIFILIYYAPLHLALGR 92
          VSATTGF TGQ ++FI IYYAPLHLALGR
Sbjct: 62 VSATTGFITGQLMMFISIYYAPLHLALGR 86

[Close]

BLAST of CmoCh16G004090 vs. TrEMBL
Match: A0A0S2IDU4_9ROSI (Ycf1 OS=Cucurbita argyrosperma GN=ycf1 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-24
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 3  IINSVVVGPLISSFSELGLWKKEPVIVVGLYYGFLTTFSIGPSYLFLFRARVMKEGTEKK 62
          I+ S ++G L+S   ++       V+VVGLYYGFLTTFSIGPSYLFL RARVM+EGTEKK
Sbjct: 2  ILKSFILGNLVSLCMKI----INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKK 61

Query: 63 VSATTGFNTGQFLIFILIYYAPLHLALGR 92
          VSATTGF TGQ ++FI IYYAPLHLALGR
Sbjct: 62 VSATTGFITGQLMMFISIYYAPLHLALGR 86

[Close]

BLAST of CmoCh16G004090 vs. TrEMBL
Match: A0A0S2IDC6_9ROSI (Uncharacterized protein OS=Cucurbita argyrosperma PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-24
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 3  IINSVVVGPLISSFSELGLWKKEPVIVVGLYYGFLTTFSIGPSYLFLFRARVMKEGTEKK 62
          I+ S ++G L+S   ++       V+VVGLYYGFLTTFSIGPSYLFL RARVM+EGTEKK
Sbjct: 2  ILKSFILGNLVSLCMKI----INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKK 61

Query: 63 VSATTGFNTGQFLIFILIYYAPLHLALGR 92
          VSATTGF TGQ ++FI IYYAPLHLALGR
Sbjct: 62 VSATTGFITGQLMMFISIYYAPLHLALGR 86

[Close]

BLAST of CmoCh16G004090 vs. TAIR10
Match: ATCG01130.1 (ATCG01130.1 Ycf1 protein)

HSP 1 Score: 111.7 bits (278), Expect = 2.8e-25
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 1


Query: 3  IINSVVVGPLISSFSELGLWKKEPVIVVGLYYGFLTTFSIGPSYLFLFRARVM---KEGT 62
          +  S ++G L+S   ++       V+VVGLYYGFLTTFSIGPSYLFL RARVM   +EGT
Sbjct: 3  VFQSFILGNLVSLCMKI----INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGT 62

Query: 63 EKKVSATTGFNTGQFLIFILIYYAPLHLALGR 92
          EKKVSATTGF  GQ ++FI IYYAPLHLALGR
Sbjct: 63 EKKVSATTGFIAGQLMMFISIYYAPLHLALGR 90

[Close]

BLAST of CmoCh16G004090 vs. TAIR10
Match: ATCG01000.1 (ATCG01000.1 Ycf1 protein)

HSP 1 Score: 111.7 bits (278), Expect = 2.8e-25
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 1


Query: 3  IINSVVVGPLISSFSELGLWKKEPVIVVGLYYGFLTTFSIGPSYLFLFRARVM---KEGT 62
          +  S ++G L+S   ++       V+VVGLYYGFLTTFSIGPSYLFL RARVM   +EGT
Sbjct: 3  VFQSFILGNLVSLCMKI----INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGT 62

Query: 63 EKKVSATTGFNTGQFLIFILIYYAPLHLALGR 92
          EKKVSATTGF  GQ ++FI IYYAPLHLALGR
Sbjct: 63 EKKVSATTGFIAGQLMMFISIYYAPLHLALGR 90

[Close]

BLAST of CmoCh16G004090 vs. TAIR10
Match: ATMG00370.1 (ATMG00370.1 Ycf1 protein)

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-24
Identity = 56/68 (82.35%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 27 VIVVGLYYGFLTTFSIGPSYLFLFRARVM---KEGTEKKVSATTGFNTGQFLIFILIYYA 86
          V+VVGLYYGFLTTFSIGPSYLFL RARVM   +EGTEKKVSATTGF  GQ ++FI IYYA
Sbjct: 22 VVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLMMFISIYYA 81

Query: 87 PLHLALGR 92
          PLHLALGR
Sbjct: 82 PLHLALGR 89

[Close]

BLAST of CmoCh16G004090 vs. TAIR10
Match: AT2G07739.1 (AT2G07739.1 Ycf1 protein)

HSP 1 Score: 107.5 bits (267), Expect = 5.2e-24
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 1


Query: 27 VIVVGLYYGFLTTFSIGPSYLFLFRARVM---KEGTEKKVSATTGFNTGQFLIFILIYYA 86
          V+VVGLYYGFLTTFSIGP YLFL RARVM   +EGTEKKVSATTGF  GQ ++FI IYYA
Sbjct: 22 VVVVGLYYGFLTTFSIGPFYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLMMFISIYYA 81

Query: 87 PLHLALGR 92
          PLHLALGR
Sbjct: 82 PLHLALGR 89

[Close]

BLAST of CmoCh16G004090 vs. NCBI nr
Match: gi|1009104610|ref|YP_009239776.1| (hypothetical chloroplast ycf1 (chloroplast) [Utricularia reniformis])

HSP 1 Score: 122.9 bits (307), Expect = 3.4e-25
Identity = 64/91 (70.33%), Postives = 73/91 (80.22%), Query Frame = 1


Query: 1  MKIINSVVVGPLISSFSELGLWKKEPVIVVGLYYGFLTTFSIGPSYLFLFRARVMKEGTE 60
          M I  S ++G L+S   ++       V+VVGLYYGFLTTFSIGPSYLFL RA+VM+EGTE
Sbjct: 1  MMIFQSFILGNLVSFCMKI----IHSVVVVGLYYGFLTTFSIGPSYLFLLRAQVMEEGTE 60

Query: 61 KKVSATTGFNTGQFLIFILIYYAPLHLALGR 92
          KKVSATTGF TGQF+IFI IYYAPLHLALGR
Sbjct: 61 KKVSATTGFITGQFMIFISIYYAPLHLALGR 87

[Close]

BLAST of CmoCh16G004090 vs. NCBI nr
Match: gi|290489072|gb|ADD30920.1| (putative RF1 protein (chloroplast) [Oxalis latifolia])

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-24
Identity = 63/89 (70.79%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 3  IINSVVVGPLISSFSELGLWKKEPVIVVGLYYGFLTTFSIGPSYLFLFRARVMKEGTEKK 62
          I+ S ++G L+S   +L       V+VVGLYYGFLTTFSIGPSYLFL RARVM+EGTEKK
Sbjct: 2  ILKSFILGNLVSFSMKL----INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKK 61

Query: 63 VSATTGFNTGQFLIFILIYYAPLHLALGR 92
          VSATTGF TGQ ++FI IYYAPLHLALGR
Sbjct: 62 VSATTGFITGQLMMFISIYYAPLHLALGR 86

[Close]

BLAST of CmoCh16G004090 vs. NCBI nr
Match: gi|340807136|gb|AEK71734.1| (hypothetical chloroplast RF1 [Oxalis latifolia])

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-24
Identity = 63/89 (70.79%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 3  IINSVVVGPLISSFSELGLWKKEPVIVVGLYYGFLTTFSIGPSYLFLFRARVMKEGTEKK 62
          I+ S ++G L+S   +L       V+VVGLYYGFLTTFSIGPSYLFL RARVM+EGTEKK
Sbjct: 2  ILKSFILGNLVSFSMKL----INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKK 61

Query: 63 VSATTGFNTGQFLIFILIYYAPLHLALGR 92
          VSATTGF TGQ ++FI IYYAPLHLALGR
Sbjct: 62 VSATTGFITGQLMMFISIYYAPLHLALGR 86

[Close]

BLAST of CmoCh16G004090 vs. NCBI nr
Match: gi|952955205|gb|ALO22556.1| (Ycf1 (plastid) [Cucurbita pepo subsp. fraterna])

HSP 1 Score: 120.2 bits (300), Expect = 2.2e-24
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 3  IINSVVVGPLISSFSELGLWKKEPVIVVGLYYGFLTTFSIGPSYLFLFRARVMKEGTEKK 62
          I+ S ++G L+S   ++       V+VVGLYYGFLTTFSIGPSYLFL RARVM+EGTEKK
Sbjct: 2  ILKSFILGNLVSLCMKI----INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKK 61

Query: 63 VSATTGFNTGQFLIFILIYYAPLHLALGR 92
          VSATTGF TGQ ++FI IYYAPLHLALGR
Sbjct: 62 VSATTGFITGQLMMFISIYYAPLHLALGR 86

[Close]

BLAST of CmoCh16G004090 vs. NCBI nr
Match: gi|317046229|ref|YP_004072518.1| (hypothetical protein ColaC_p079 [Corynocarpus laevigata])

HSP 1 Score: 120.2 bits (300), Expect = 2.2e-24
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 3  IINSVVVGPLISSFSELGLWKKEPVIVVGLYYGFLTTFSIGPSYLFLFRARVMKEGTEKK 62
          I+ S ++G L+S   ++       V+VVGLYYGFLTTFSIGPSYLFL RARVM+EGTEKK
Sbjct: 2  ILKSFILGNLVSLCMKI----INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKK 61

Query: 63 VSATTGFNTGQFLIFILIYYAPLHLALGR 92
          VSATTGF TGQ ++FI IYYAPLHLALGR
Sbjct: 62 VSATTGFITGQLMMFISIYYAPLHLALGR 86

The following BLAST results are available for this feature:

BLAST of CmoCh16G004090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TI214_ILLOL	1.8e-26	69.66	Protein TIC 214 OS=Illicium oligandrum GN=TIC214 PE=3 SV=1	[more]
TI214_BUXMI	3.1e-26	69.66	Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1	[more]
TI214_NANDO	3.1e-26	69.66	Protein TIC 214 OS=Nandina domestica GN=TIC214 PE=3 SV=1	[more]
TI214_CALFG	4.0e-26	68.13	Protein TIC 214 OS=Calycanthus floridus var. glaucus GN=TIC214 PE=3 SV=1	[more]
TI214_COFAR	4.0e-26	69.66	Protein TIC 214 OS=Coffea arabica GN=TIC214 PE=3 SV=1	[more]

BLAST of CmoCh16G004090 vs. TrEMBL


Match Name	E-value	Identity	Description
D3WEV7_9ROSI	9.0e-25	70.79	Putative RF1 protein OS=Oxalis latifolia GN=ycf1 PE=4 SV=1	[more]
G0YDQ7_9ROSI	9.0e-25	70.79	Hypothetical chloroplast RF1 (Fragment) OS=Oxalis latifolia GN=ycf1 PE=4 SV=1	[more]
A0A0S2IF45_9ROSI	1.5e-24	69.66	Ycf1 OS=Cucurbita foetidissima GN=ycf1 PE=4 SV=1	[more]
A0A0S2IDU4_9ROSI	1.5e-24	69.66	Ycf1 OS=Cucurbita argyrosperma GN=ycf1 PE=4 SV=1	[more]
A0A0S2IDC6_9ROSI	1.5e-24	69.66	Uncharacterized protein OS=Cucurbita argyrosperma PE=4 SV=1	[more]

BLAST of CmoCh16G004090 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG01130.1	2.8e-25	65.22	ATCG01130.1 Ycf1 protein	[more]
ATCG01000.1	2.8e-25	65.22	ATCG01000.1 Ycf1 protein	[more]
ATMG00370.1	1.1e-24	82.35	ATMG00370.1 Ycf1 protein	[more]
AT2G07739.1	5.2e-24	80.88	Ycf1 protein	[more]

BLAST of CmoCh16G004090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1009104610\|ref\|YP_009239776.1\|	3.4e-25	70.33	hypothetical chloroplast ycf1 (chloroplast) [Utricularia reniformis]	[more]
gi\|290489072\|gb\|ADD30920.1\|	1.3e-24	70.79	putative RF1 protein (chloroplast) [Oxalis latifolia]	[more]
gi\|340807136\|gb\|AEK71734.1\|	1.3e-24	70.79	hypothetical chloroplast RF1 [Oxalis latifolia]	[more]
gi\|952955205\|gb\|ALO22556.1\|	2.2e-24	69.66	Ycf1 (plastid) [Cucurbita pepo subsp. fraterna]	[more]
gi\|317046229\|ref\|YP_004072518.1\|	2.2e-24	69.66	hypothetical protein ColaC_p079 [Corynocarpus laevigata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008896	TIC214

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009528	plastid inner membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G004090.1	CmoCh16G004090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 27..94 score: 9.3
None	No IPR available	PANTHER	PTHR33163	FAMILY NOT NAMED	coord: 3..91 score: 1.0
None	No IPR available	PANTHER	PTHR33163:SF3	MEMBRANE PROTEIN YCF1-RELATED	coord: 3..91 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G004090	Cucumber (Gy14) v1	cgycmoB0006
CmoCh16G004090	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G004090	Cucurbita maxima (Rimu)	cmacmoB701
CmoCh16G004090	Wild cucumber (PI 183967)	cmocpiB315
CmoCh16G004090	Cucumber (Chinese Long) v2	cmocuB307
CmoCh16G004090	Melon (DHL92) v3.5.1	cmomeB290
CmoCh16G004090	Watermelon (Charleston Gray)	cmowcgB291
CmoCh16G004090	Watermelon (97103) v1	cmowmB311
CmoCh16G004090	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G004090	Cucurbita pepo (Zucchini)	cmocpeB311
CmoCh16G004090	Bottle gourd (USVL1VR-Ls)	cmolsiB304
CmoCh16G004090	Cucumber (Gy14) v2	cgybcmoB301
CmoCh16G004090	Melon (DHL92) v3.6.1	cmomedB332
CmoCh16G004090	Silver-seed gourd	carcmoB0089
CmoCh16G004090	Silver-seed gourd	carcmoB0898
CmoCh16G004090	Cucumber (Chinese Long) v3	cmocucB0370
CmoCh16G004090	Watermelon (97103) v2	cmowmbB332
CmoCh16G004090	Wax gourd	cmowgoB0434
CmoCh16G004090	Cucurbita moschata (Rifu)	cmocmoB286