CmoCh16G004050 (gene) Cucurbita moschata (Rifu)

NameCmoCh16G004050
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description11S seed storage protein
LocationCmo_Chr16 : 1865107 .. 1865803 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTGAATTTGGAGCCGATGAGTCCAAAACCCTTCTTCCAAGGAGAAGGTGGATCCTTCCATAAATGGTTCCCTTCGGATTTTCCGATGATTGCTCACACCAAAGTCGGCGCCGGCCGACTCCTCCTCCGGCCACGTGGCTTCGCCCTTCCCCATAACTCCGATTCCTCCAAAGTTGGATACGTTCTTCAAGGTTTTTATTTATTTATTTTTATTTTTAATATTTAGTGTAAATTGAGAAATAAGGGTCGTGTAAGATGGTTCGTAAATTGAATTGGGTCGGGTTGGAATATCTTTTATAAAATTTTTTAATCAAACAACTTTTATTAAATAATTAATTTTATTTTTTTAATAAAAATAATAAATTAATTTATAATATATTTATTTATTTTGAAACCCATAATTAAGATTTACTACTGAATTAAATAAATATATGTACATATAATTGTATTCAGGTATTGGACTTGCCGGGATTCTATTCCCAGGAAGCTCCGACGAAGCAGTGGTGAGACTTAAGAAAGGCGACCTGATTCCGGTGCCGGAGGGAGTCACCTCCTGGTGGTTCAAGAGACTCCGATTTCGAAGTCCTTCTCGTCGGCGACACCCGAAACGCCCTAATTCCCGGCGATATTACCTACGTCGTCTTCACCGGACCCCTTGGAGTACTACAAGGCTTCTCGCCGGACTACGTTAA

mRNA sequence

ATGGAGTTGAATTTGGAGCCGATGAGTCCAAAACCCTTCTTCCAAGGAGAAGGTGGATCCTTCCATAAATGGTTCCCTTCGGATTTTCCGATGATTGCTCACACCAAAGTCGGCGCCGGCCGACTCCTCCTCCGGCCACGTGGCTTCGCCCTTCCCCATAACTCCGATTCCTCCAAAGTTGGATACGTTCTTCAAGGTATTGGACTTGCCGGGATTCTATTCCCAGGAAGCTCCGACGAAGCAGTGGTGAGACTTAAGAAAGGCGACCTGATTCCGGTGCCGGAGGGAGTCACCTCCTGGTGGTTCAAGAGACTCCGATTTCGAAGTCCTTCTCGTCGGCGACACCCGAAACGCCCTAATTCCCGGCGATATTACCTACGTCGTCTTCACCGGACCCCTTGGAGTACTACAAGGCTTCTCGCCGGACTACGTTAA

Coding sequence (CDS)

ATGGAGTTGAATTTGGAGCCGATGAGTCCAAAACCCTTCTTCCAAGGAGAAGGTGGATCCTTCCATAAATGGTTCCCTTCGGATTTTCCGATGATTGCTCACACCAAAGTCGGCGCCGGCCGACTCCTCCTCCGGCCACGTGGCTTCGCCCTTCCCCATAACTCCGATTCCTCCAAAGTTGGATACGTTCTTCAAGGTATTGGACTTGCCGGGATTCTATTCCCAGGAAGCTCCGACGAAGCAGTGGTGAGACTTAAGAAAGGCGACCTGATTCCGGTGCCGGAGGGAGTCACCTCCTGGTGGTTCAAGAGACTCCGATTTCGAAGTCCTTCTCGTCGGCGACACCCGAAACGCCCTAATTCCCGGCGATATTACCTACGTCGTCTTCACCGGACCCCTTGGAGTACTACAAGGCTTCTCGCCGGACTACGTTAA
BLAST of CmoCh16G004050 vs. Swiss-Prot
Match: LEGB4_VICFA (Legumin type B OS=Vicia faba GN=LEB4 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.7e-07
Identity = 31/121 (25.62%), Postives = 50/121 (41.32%), Query Frame = 1

Query: 4   NLEPMSPKPFFQGEGGSFHKWFPSDFPMIAHTKVGAGRLLLRPRGFALPHNSDSSKVGYV 63
           N+  + P    + E G    W P+  P +    V   R  + P G  LP  S S ++ Y+
Sbjct: 37  NINALEPDHRVESEAGLTETWNPNH-PELRCAGVSLIRRTIDPNGLHLPSYSPSPQLIYI 96

Query: 64  LQGIGLAGILFPG----------------------SSDEAVVRLKKGDLIPVPEGVTSWW 103
           +QG G+ G+  PG                       S + + R +KGD+I +P G+  W 
Sbjct: 97  IQGKGVIGLTLPGCPQTYQEPRSSQSRQGSRQQQPDSHQKIRRFRKGDIIAIPSGIPYWT 156

BLAST of CmoCh16G004050 vs. Swiss-Prot
Match: LEGJ_PEA (Legumin J OS=Pisum sativum GN=LEGJ PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 31/121 (25.62%), Postives = 51/121 (42.15%), Query Frame = 1

Query: 4   NLEPMSPKPFFQGEGGSFHKWFPSDFPMIAHTKVGAGRLLLRPRGFALPHNSDSSKVGYV 63
           ++  + P    + E G    W P+  P +    V   R  + P G  LP  S S ++ ++
Sbjct: 37  SINALEPDHRVESEAGLTETWNPNH-PELKCAGVSLIRRTIDPNGLHLPSFSPSPQLIFI 96

Query: 64  LQGIGLAGILFP----------------------GSSDEAVVRLKKGDLIPVPEGVTSWW 103
           +QG G+ G+ FP                      G S + V R +KGD+I +P G+  W 
Sbjct: 97  IQGKGVLGLSFPGCPETYEEPRSSQSRQESRQQQGDSHQKVRRFRKGDIIAIPSGIPYWT 156

BLAST of CmoCh16G004050 vs. TrEMBL
Match: A0A0A0LC21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G218170 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 6.3e-45
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 1

Query: 1   MELNLEPMSPKPFFQGEGGSFHKWFPSDFPMIAHTKVGAGRLLLRPRGFALPHNSDSSKV 60
           MELNL+PM P  FF GEGGSFHKWFPSDFP+I+ TKVGAGRLLL PRGFA+PHNSDSSKV
Sbjct: 1   MELNLKPMDPSNFFTGEGGSFHKWFPSDFPIISQTKVGAGRLLLHPRGFAVPHNSDSSKV 60

Query: 61  GYVLQGIGLAGILFPGSSDEAVVRLKKGDLIPVPEGVTSWWF 103
           GYVLQG G+AGI+FP  S+EA VRLKKGD+IPVPEGVTSWWF
Sbjct: 61  GYVLQGSGVAGIIFPCKSEEAAVRLKKGDVIPVPEGVTSWWF 102

BLAST of CmoCh16G004050 vs. TrEMBL
Match: Q9M674_CUCME (Globulin-like protein (Fragment) OS=Cucumis melo PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.2e-42
Identity = 82/102 (80.39%), Postives = 90/102 (88.24%), Query Frame = 1

Query: 1   MELNLEPMSPKPFFQGEGGSFHKWFPSDFPMIAHTKVGAGRLLLRPRGFALPHNSDSSKV 60
           MEL+L+PM P  FF GEGGSFHKWFPSD  +I  TKVGAGRLLL PRGFA+PHNSDSSKV
Sbjct: 1   MELDLKPMDPTNFFTGEGGSFHKWFPSDHLIIPQTKVGAGRLLLHPRGFAVPHNSDSSKV 60

Query: 61  GYVLQGIGLAGILFPGSSDEAVVRLKKGDLIPVPEGVTSWWF 103
           GYVLQG G+AGI+FP  S+EAVVRLKKGD+IPVPEGVTSWWF
Sbjct: 61  GYVLQGSGVAGIVFPCKSEEAVVRLKKGDVIPVPEGVTSWWF 102

BLAST of CmoCh16G004050 vs. TrEMBL
Match: A0A0A0L6K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G218160 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-35
Identity = 68/99 (68.69%), Postives = 81/99 (81.82%), Query Frame = 1

Query: 5   LEPMSPKPFFQGEGGSFHKWFPSDFPMIAHTKVGAGRLLLRPRGFALPHNSDSSKVGYVL 64
           +E M+PKPFF+GEGGS+HKW PSD+P++A T V  GRLLLRPRGFA+PH SD SK GYVL
Sbjct: 1   MEAMNPKPFFEGEGGSYHKWLPSDYPLLAQTNVAGGRLLLRPRGFAVPHYSDCSKFGYVL 60

Query: 65  QG-IGLAGILFPGSSDEAVVRLKKGDLIPVPEGVTSWWF 103
           QG  G+ G +FP   +E V++LKKGDLIPVP GVTSWWF
Sbjct: 61  QGEDGVTGFVFPKKCNEVVIKLKKGDLIPVPAGVTSWWF 99

BLAST of CmoCh16G004050 vs. TrEMBL
Match: A0A0A0K550_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G337100 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.5e-33
Identity = 63/102 (61.76%), Postives = 85/102 (83.33%), Query Frame = 1

Query: 2   ELNLEPMSPKPFFQGEGGSFHKWFPSDFPMIAHTKVGAGRLLLRPRGFALPHNSDSSKVG 61
           E NL+ M+P+  F+G GGS++KW+PSD+P++A +KVGAG LLL PRGFA+ H SD+SKVG
Sbjct: 3   EQNLKAMNPRKHFEGVGGSYNKWYPSDYPLLAQSKVGAGMLLLHPRGFAILHYSDASKVG 62

Query: 62  YVLQG-IGLAGILFPGSSDEAVVRLKKGDLIPVPEGVTSWWF 103
           YVL+G  G+ G +FP +S+E V++LKKGD+IPVP GVTSWW+
Sbjct: 63  YVLRGNNGVTGFIFPNTSNEEVIKLKKGDIIPVPTGVTSWWY 104

BLAST of CmoCh16G004050 vs. TrEMBL
Match: A0A0A0KA23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G368140 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-30
Identity = 62/101 (61.39%), Postives = 83/101 (82.18%), Query Frame = 1

Query: 1   MELNLEPMSPKPFFQGEGGSFHKWFPSDFPMIAHTKVGAGRLLLRPRGFALPHNSDSSKV 60
           M  N++ M+P+ +FQG GGS++KW+PSD+P++A +KV AG LLL PRGFA+ H SD+SKV
Sbjct: 1   MVQNMKAMNPRKYFQGVGGSYNKWYPSDYPLLAQSKVRAGMLLLHPRGFAILHYSDASKV 60

Query: 61  GYVLQG-IGLAGILFPGSSDEAVVRLKKGDLIPVPEGVTSW 101
           GYVLQG  G+ G +FP +S+E V++L+KGDLIPVP GVTSW
Sbjct: 61  GYVLQGNNGVTGFIFPNTSNEQVIKLQKGDLIPVPAGVTSW 101

BLAST of CmoCh16G004050 vs. TAIR10
Match: AT1G07750.1 (AT1G07750.1 RmlC-like cupins superfamily protein)

HSP 1 Score: 115.2 bits (287), Expect = 3.4e-26
Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = 1

Query: 1   MELNLEPMSPKPFFQGEGGSFHKWFPSDFPMIAHTKVGAGRLLLRPRGFALPHNSDSSKV 60
           MEL+L P  PK  + G+GGS+  W P + PM+    +GA +L L   GFA+P  SDSSKV
Sbjct: 1   MELDLTPKLPKKVYGGDGGSYSAWCPEELPMLKQGNIGAAKLALEKNGFAVPRYSDSSKV 60

Query: 61  GYVLQGIGLAGILFPGSSDEAVVRLKKGDLIPVPEGVTSWWF 103
            YVLQG G AGI+ P   +E V+ +K+GD I +P GV +WWF
Sbjct: 61  AYVLQGSGTAGIVLP-EKEEKVIAIKQGDSIALPFGVVTWWF 101

BLAST of CmoCh16G004050 vs. TAIR10
Match: AT2G28680.1 (AT2G28680.1 RmlC-like cupins superfamily protein)

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-25
Identity = 51/102 (50.00%), Postives = 65/102 (63.73%), Query Frame = 1

Query: 1   MELNLEPMSPKPFFQGEGGSFHKWFPSDFPMIAHTKVGAGRLLLRPRGFALPHNSDSSKV 60
           MEL+L P  PK  + G+GGS+  W P + PM+    +GA +L L   G ALP  SDS KV
Sbjct: 1   MELDLSPRLPKKVYGGDGGSYFAWCPEELPMLRDGNIGASKLALEKYGLALPRYSDSPKV 60

Query: 61  GYVLQGIGLAGILFPGSSDEAVVRLKKGDLIPVPEGVTSWWF 103
            YVLQG G AGI+ P   +E V+ +KKGD I +P GV +WWF
Sbjct: 61  AYVLQGAGTAGIVLP-EKEEKVIAIKKGDSIALPFGVVTWWF 101

BLAST of CmoCh16G004050 vs. NCBI nr
Match: gi|700202448|gb|KGN57581.1| (hypothetical protein Csa_3G218170 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 9.1e-45
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 1

Query: 1   MELNLEPMSPKPFFQGEGGSFHKWFPSDFPMIAHTKVGAGRLLLRPRGFALPHNSDSSKV 60
           MELNL+PM P  FF GEGGSFHKWFPSDFP+I+ TKVGAGRLLL PRGFA+PHNSDSSKV
Sbjct: 1   MELNLKPMDPSNFFTGEGGSFHKWFPSDFPIISQTKVGAGRLLLHPRGFAVPHNSDSSKV 60

Query: 61  GYVLQGIGLAGILFPGSSDEAVVRLKKGDLIPVPEGVTSWWF 103
           GYVLQG G+AGI+FP  S+EA VRLKKGD+IPVPEGVTSWWF
Sbjct: 61  GYVLQGSGVAGIIFPCKSEEAAVRLKKGDVIPVPEGVTSWWF 102

BLAST of CmoCh16G004050 vs. NCBI nr
Match: gi|778680244|ref|XP_011651276.1| (PREDICTED: legumin J-like [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 9.1e-45
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 1

Query: 1   MELNLEPMSPKPFFQGEGGSFHKWFPSDFPMIAHTKVGAGRLLLRPRGFALPHNSDSSKV 60
           MELNL+PM P  FF GEGGSFHKWFPSDFP+I+ TKVGAGRLLL PRGFA+PHNSDSSKV
Sbjct: 1   MELNLKPMDPSNFFTGEGGSFHKWFPSDFPIISQTKVGAGRLLLHPRGFAVPHNSDSSKV 60

Query: 61  GYVLQGIGLAGILFPGSSDEAVVRLKKGDLIPVPEGVTSWWF 103
           GYVLQG G+AGI+FP  S+EA VRLKKGD+IPVPEGVTSWWF
Sbjct: 61  GYVLQGSGVAGIIFPCKSEEAAVRLKKGDVIPVPEGVTSWWF 102

BLAST of CmoCh16G004050 vs. NCBI nr
Match: gi|659112131|ref|XP_008456077.1| (PREDICTED: glutelin type-B 2-like [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 2.2e-43
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = 1

Query: 1   MELNLEPMSPKPFFQGEGGSFHKWFPSDFPMIAHTKVGAGRLLLRPRGFALPHNSDSSKV 60
           MEL+L+PM P  FF GEGGSFHKWFPSD P+I  TKVGAGRLLL PRGFA+PHNSDSSKV
Sbjct: 1   MELDLKPMDPTNFFTGEGGSFHKWFPSDHPIIPQTKVGAGRLLLHPRGFAVPHNSDSSKV 60

Query: 61  GYVLQGIGLAGILFPGSSDEAVVRLKKGDLIPVPEGVTSWWF 103
           GYVLQG G+AGI+FP  S+EAVVRLKKGD+IPVPEGVTSWWF
Sbjct: 61  GYVLQGSGVAGIVFPCKSEEAVVRLKKGDVIPVPEGVTSWWF 102

BLAST of CmoCh16G004050 vs. NCBI nr
Match: gi|7595348|gb|AAF64423.1|AF206627_1 (globulin-like protein [Cucumis melo])

HSP 1 Score: 179.9 bits (455), Expect = 3.2e-42
Identity = 82/102 (80.39%), Postives = 90/102 (88.24%), Query Frame = 1

Query: 1   MELNLEPMSPKPFFQGEGGSFHKWFPSDFPMIAHTKVGAGRLLLRPRGFALPHNSDSSKV 60
           MEL+L+PM P  FF GEGGSFHKWFPSD  +I  TKVGAGRLLL PRGFA+PHNSDSSKV
Sbjct: 1   MELDLKPMDPTNFFTGEGGSFHKWFPSDHLIIPQTKVGAGRLLLHPRGFAVPHNSDSSKV 60

Query: 61  GYVLQGIGLAGILFPGSSDEAVVRLKKGDLIPVPEGVTSWWF 103
           GYVLQG G+AGI+FP  S+EAVVRLKKGD+IPVPEGVTSWWF
Sbjct: 61  GYVLQGSGVAGIVFPCKSEEAVVRLKKGDVIPVPEGVTSWWF 102

BLAST of CmoCh16G004050 vs. NCBI nr
Match: gi|449467587|ref|XP_004151504.1| (PREDICTED: legumin J [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 2.2e-35
Identity = 68/99 (68.69%), Postives = 81/99 (81.82%), Query Frame = 1

Query: 5   LEPMSPKPFFQGEGGSFHKWFPSDFPMIAHTKVGAGRLLLRPRGFALPHNSDSSKVGYVL 64
           +E M+PKPFF+GEGGS+HKW PSD+P++A T V  GRLLLRPRGFA+PH SD SK GYVL
Sbjct: 1   MEAMNPKPFFEGEGGSYHKWLPSDYPLLAQTNVAGGRLLLRPRGFAVPHYSDCSKFGYVL 60

Query: 65  QG-IGLAGILFPGSSDEAVVRLKKGDLIPVPEGVTSWWF 103
           QG  G+ G +FP   +E V++LKKGDLIPVP GVTSWWF
Sbjct: 61  QGEDGVTGFVFPKKCNEVVIKLKKGDLIPVPAGVTSWWF 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
LEGB4_VICFA5.7e-0725.62Legumin type B OS=Vicia faba GN=LEB4 PE=3 SV=1[more]
LEGJ_PEA1.7e-0625.62Legumin J OS=Pisum sativum GN=LEGJ PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LC21_CUCSA6.3e-4582.35Uncharacterized protein OS=Cucumis sativus GN=Csa_3G218170 PE=4 SV=1[more]
Q9M674_CUCME2.2e-4280.39Globulin-like protein (Fragment) OS=Cucumis melo PE=2 SV=1[more]
A0A0A0L6K0_CUCSA1.6e-3568.69Uncharacterized protein OS=Cucumis sativus GN=Csa_3G218160 PE=4 SV=1[more]
A0A0A0K550_CUCSA9.5e-3361.76Uncharacterized protein OS=Cucumis sativus GN=Csa_7G337100 PE=4 SV=1[more]
A0A0A0KA23_CUCSA1.2e-3061.39Uncharacterized protein OS=Cucumis sativus GN=Csa_7G368140 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G07750.13.4e-2650.00 RmlC-like cupins superfamily protein[more]
AT2G28680.11.3e-2550.00 RmlC-like cupins superfamily protein[more]
Match NameE-valueIdentityDescription
gi|700202448|gb|KGN57581.1|9.1e-4582.35hypothetical protein Csa_3G218170 [Cucumis sativus][more]
gi|778680244|ref|XP_011651276.1|9.1e-4582.35PREDICTED: legumin J-like [Cucumis sativus][more]
gi|659112131|ref|XP_008456077.1|2.2e-4381.37PREDICTED: glutelin type-B 2-like [Cucumis melo][more]
gi|7595348|gb|AAF64423.1|AF206627_13.2e-4280.39globulin-like protein [Cucumis melo][more]
gi|449467587|ref|XP_004151504.1|2.2e-3568.69PREDICTED: legumin J [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006045Cupin_1
IPR011051RmlC_Cupin_sf
IPR014710RmlC-like_jellyroll
Vocabulary: Molecular Function
TermDefinition
GO:0045735nutrient reservoir activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0045735 nutrient reservoir activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G004050.1CmoCh16G004050.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006045Cupin 1PFAMPF00190Cupin_1coord: 9..102
score: 5.6
IPR006045Cupin 1SMARTSM00835Cupin_1_3coord: 3..122
score: 3.
IPR011051RmlC-like cupin domainunknownSSF51182RmlC-like cupinscoord: 4..102
score: 9.38
IPR014710RmlC-like jelly roll foldGENE3DG3DSA:2.60.120.10coord: 9..102
score: 1.0
NoneNo IPR availablePANTHERPTHR31189FAMILY NOT NAMEDcoord: 1..102
score: 7.5
NoneNo IPR availablePANTHERPTHR31189:SF0SUBFAMILY NOT NAMEDcoord: 1..102
score: 7.5