CmoCh16G003560 (gene) Cucurbita moschata (Rifu)

NameCmoCh16G003560
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr16 : 1646089 .. 1649449 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGAAGCAAGAATCTTGAAGTTTCAAATCATTACTGATCTTTTTTTGTTCCCCCTTACAGCCTACTTAGTTTGATGTAATTTACTCTACAACTTATAGTTGAAACAAATCAGGCCTCTTGTGTTTCCATAAGCAGAAGAGATATAACATTAATGCTGCTTCTTCCTGGTTTTACATAGGATTCTAAGCACTTCCCCTAAGGTTAGTCATGTACTTGATATATGATGACACAATCAGAATGAAGAAGATGACTCCAGAGTTCTTGACAGACAGATACAAGAATTAAAGTCGGAGATTCAGGTCAAGCTTGAATGGTTCCATTTGCGGTTCTCGTAGTGGTGGTGACTCTGGGAGAACTTGATGTTGAGTGAAGCGGAAGCTTCCTGGCCACCTCAAGTCCATGGCATCCCCCAGCATGAAAGGTGCCCATGAACCACTTTTTACATGATTAAATCTTGCTACTATTGCAGTATCTTCCCTGCTTGTTTTGTGCACCAGTGAATGTGGTTGAACACCAAGTGATCTAACCATAGAATTATGTATTGGCAGACCAAGCAGAGTCATCATTCTCTGAGCTTGGTGCCTTCTGGCTGCACTCCTCTCCCTCTTGTGGGCATTTTGATGGCCTCCCAATGCCTGTGAGCTGTAGAATACTCTCTTACAGAAGTTGCATGAAAAGGTCTTGGCTGAACCTGCAGAGCTTTGTGATTCAGTTAAAAGCTGTTTGTTCCTACCCAGGCTCAAGTTCAGCCACTCCAAAGCTCCTACACCTTCAGGTTGGTCTGTTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAACTGATTCATTTTCTCCTTTTTTCTCCTTCAATGATTCAATTTGTTCTCCTTGAAAGATCATTGCTAACCCAGATTCCTAAATTAGCAGCGATGATACTGAACTATAAAATGGACAGGATTGCTGATTCTTTATCTAGCTGGGAATGGTAACAACTCATGATTCTTCTTAGATTTCATTTTCCAAGATGAACAAATGCTGAGGAAGTTGTGAGAGGATGAAAGTGTAAGTTTTCGTTTATATGTTTCTGCATTTCTTATCTTCATTCTCCTCCCGACCATTAGTGGTCCAGTGGACAATGCTTATGTCATCTGTACTGTTTCCCTTTCAAACTAAAGGATTCCCCACTTCCATCAATCTTTTCCAATCCCTAATTTCTTAATGCACTCAGATTATACCACTTATTTACGTTGGAGATGGCTTCAGGGAATCAGGTATTCAAGCCCCTTCATAAATCTAGATATCTTTTAAGTTTGGTTCACATCATGGTAGCTACTTAATAAGGATATCGAGTATTCTATTAATTTTTTACTCAAAATATCTTACGTTAGATAGTTGCCTTGTGAGAAGTGTACAATCCTTTGGCGTTCACGATTATGAAAAAGCTCACGAGGACAGTCAAAGTTTGAATTCGAAATCACTTCAATTATTTGATTCAGCCCTACAAAGAAAATACTTGCGTAATGAAAGATTGGTCAATATTCAAACTCGAGATAATGTTGATTTTCTTTTGTCTTTGTATTGCTACCTTCTTAGCCACATCTTTAGGAGCCCTATACCAACCTTACACAAAACTTGTTTGTGGGAAACTTTTGAGAAAATACATGATTGAAAGTTGTACAAAAACCGCAACATCAATATCAGTCACAATCTAACAAGCTGTTTGAATTGTCCCTCCAATGCATCGAAGGAGTACACTTCTTATCCAACACAAGTAAACCGAATCACTTTTAAAACTACTTTTGTGGGATTCTTTTCCAAGGCTGATGTTGGCAACACATATCTCTACAACCAAGTGATTTCTTTCGGGTCCTCATTCTGTTTGGCAAAAGAGAACAGGTAACAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAGGTTGTGAGAAGAAGCATCACACAAAGCAGATAATAGTGGTTTAAGCATCTTTATTAGATATAGATGGCTTTGCATGTTGACCTAATTGTACATGATTAGGATAATGATGACTAAGTTTTATTATACCCTTTTCATAAGCATTCATTCAGCCTAATCACATGCCTTCTACAGGGGAAATCCACTGAAGGGCCACCTTTGTATGCATTGCTAATAAGTTCTTTCTTTCCATTATACTCCCATGGAAAGGGATGGTACCCCCACAAAGAAAAGATGGGTCTTTTGGCTAGTGAAGGGTAATGTTTCTAAATAATATTTGATTGGTACTTCTGTATTTATTTCTTGAGGGGGCGGTGGAAGGATAAGAAAGGGAAGGTACTTATTTCTTCCACTTTTATTTATGCAATATGGATAACCCTGAATTGGTTAGTTTGTCTTCTATGTTGAGGTTTGCTTGTTTTTTCTTATTACAAGTTAGCTATTGAATTTGGGCAGGAAATTGGAAGTACTTACTCATGTGATCTTGTCTGCAAAACTTTAGGCTAGGCTAAGACAGGATCTTTCTCTTCCTGTCTCCTGGTGAGGAGAAAGGGGAAGAGGACATTTGGATCTTTACCCTTCATGAACTTAACTAATGTTGTCTAATTCTGTTCGATTTGCTCGTTGCTTTATTTCG

mRNA sequence

ATGACAGAAGCAAGAATCTTGAAGTTTCAAATCATTACTGATCTTTTTTTGTTCCCCCTTACAGCCTACTTAAATGAAGAAGATGACTCCAGAGTTCTTGACAGACAGATACAAGAATTAAAGTCGGAGATTCAGCGGAAGCTTCCTGGCCACCTCAAGTCCATGGCATCCCCCAGCATGAAAGACCAAGCAGAGTCATCATTCTCTGAGCTTGGTGCCTTCTGGCTGCACTCCTCTCCCTCTTGTGGGCATTTTGATGGCCTCCCAATGCCTGTGAGCTGTAGAATACTCTCTTACAGAAGTTGCATGAAAAGGTCTTGGCTGAACCTGCAGAGCTTTGTGATTCAGTTAAAAGCTGTTTGTTCCTACCCAGGCTCAAGTTCAGCCACTCCAAAGCTCCTACACCTTCAGATTCCTAAATTAGCAGCGATGATACTGAACTATAAAATGGACAGGATTGCTGATTCTTTATCTAGCTGGGAATGATTATACCACTTATTTACGTTGGAGATGGCTTCAGGGAATCAGGGGAAATCCACTGAAGGGCCACCTTTGTATGCATTGCTAATAAGTTCTTTCTTTCCATTATACTCCCATGGAAAGGGATGGTACCCCCACAAAGAAAAGATGGGTCTTTTGGCTAGTGAAGGGTAATGTTTCTAAATAATATTTGATTGGTACTTCTGTATTTATTTCTTGAGGGGGCGGTGGAAGGATAAGAAAGGGAAGGTACTTATTTCTTCCACTTTTATTTATGCAATATGGATAACCCTGAATTGGTTAGTTTGTCTTCTATGTTGAGGTTTGCTTGTTTTTTCTTATTACAAGTTAGCTATTGAATTTGGGCAGGAAATTGGAAGTACTTACTCATGTGATCTTGTCTGCAAAACTTTAGGCTAGGCTAAGACAGGATCTTTCTCTTCCTGTCTCCTGGTGAGGAGAAAGGGGAAGAGGACATTTGGATCTTTACCCTTCATGAACTTAACTAATGTTGTCTAATTCTGTTCGATTTGCTCGTTGCTTTATTTCG

Coding sequence (CDS)

ATGACAGAAGCAAGAATCTTGAAGTTTCAAATCATTACTGATCTTTTTTTGTTCCCCCTTACAGCCTACTTAAATGAAGAAGATGACTCCAGAGTTCTTGACAGACAGATACAAGAATTAAAGTCGGAGATTCAGCGGAAGCTTCCTGGCCACCTCAAGTCCATGGCATCCCCCAGCATGAAAGACCAAGCAGAGTCATCATTCTCTGAGCTTGGTGCCTTCTGGCTGCACTCCTCTCCCTCTTGTGGGCATTTTGATGGCCTCCCAATGCCTGTGAGCTGTAGAATACTCTCTTACAGAAGTTGCATGAAAAGGTCTTGGCTGAACCTGCAGAGCTTTGTGATTCAGTTAAAAGCTGTTTGTTCCTACCCAGGCTCAAGTTCAGCCACTCCAAAGCTCCTACACCTTCAGATTCCTAAATTAGCAGCGATGATACTGAACTATAAAATGGACAGGATTGCTGATTCTTTATCTAGCTGGGAATGA
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G003560.1CmoCh16G003560.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 23..43
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G003560Silver-seed gourdcarcmoB0258
CmoCh16G003560Silver-seed gourdcarcmoB0402
CmoCh16G003560Silver-seed gourdcarcmoB0509
CmoCh16G003560Cucumber (Chinese Long) v3cmocucB0369
CmoCh16G003560Cucumber (Chinese Long) v3cmocucB0370
CmoCh16G003560Cucumber (Chinese Long) v3cmocucB0391
CmoCh16G003560Cucumber (Chinese Long) v3cmocucB0408
CmoCh16G003560Cucumber (Chinese Long) v3cmocucB0409
CmoCh16G003560Watermelon (97103) v2cmowmbB332
CmoCh16G003560Watermelon (97103) v2cmowmbB333
CmoCh16G003560Wax gourdcmowgoB0434
CmoCh16G003560Wax gourdcmowgoB0444
CmoCh16G003560Wax gourdcmowgoB0449
CmoCh16G003560Cucurbita moschata (Rifu)cmocmoB010
CmoCh16G003560Cucurbita moschata (Rifu)cmocmoB096
CmoCh16G003560Cucurbita moschata (Rifu)cmocmoB286
CmoCh16G003560Cucurbita moschata (Rifu)cmocmoB296
CmoCh16G003560Cucumber (Gy14) v1cgycmoB0219
CmoCh16G003560Cucumber (Gy14) v1cgycmoB0625
CmoCh16G003560Cucumber (Gy14) v1cgycmoB0964
CmoCh16G003560Cucurbita maxima (Rimu)cmacmoB038
CmoCh16G003560Cucurbita maxima (Rimu)cmacmoB133
CmoCh16G003560Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G003560Cucurbita maxima (Rimu)cmacmoB502
CmoCh16G003560Cucurbita maxima (Rimu)cmacmoB701
CmoCh16G003560Wild cucumber (PI 183967)cmocpiB315
CmoCh16G003560Wild cucumber (PI 183967)cmocpiB336
CmoCh16G003560Wild cucumber (PI 183967)cmocpiB344
CmoCh16G003560Cucumber (Chinese Long) v2cmocuB307
CmoCh16G003560Cucumber (Chinese Long) v2cmocuB328
CmoCh16G003560Cucumber (Chinese Long) v2cmocuB337
CmoCh16G003560Cucumber (Chinese Long) v2cmocuB338
CmoCh16G003560Melon (DHL92) v3.5.1cmomeB304
CmoCh16G003560Melon (DHL92) v3.5.1cmomeB280
CmoCh16G003560Melon (DHL92) v3.5.1cmomeB290
CmoCh16G003560Watermelon (Charleston Gray)cmowcgB291
CmoCh16G003560Watermelon (97103) v1cmowmB311
CmoCh16G003560Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G003560Cucurbita pepo (Zucchini)cmocpeB311
CmoCh16G003560Cucurbita pepo (Zucchini)cmocpeB321
CmoCh16G003560Bottle gourd (USVL1VR-Ls)cmolsiB291
CmoCh16G003560Bottle gourd (USVL1VR-Ls)cmolsiB298
CmoCh16G003560Bottle gourd (USVL1VR-Ls)cmolsiB304
CmoCh16G003560Cucumber (Gy14) v2cgybcmoB301
CmoCh16G003560Cucumber (Gy14) v2cgybcmoB471
CmoCh16G003560Cucumber (Gy14) v2cgybcmoB732
CmoCh16G003560Melon (DHL92) v3.6.1cmomedB349
CmoCh16G003560Melon (DHL92) v3.6.1cmomedB317
CmoCh16G003560Melon (DHL92) v3.6.1cmomedB332
CmoCh16G003560Melon (DHL92) v3.6.1cmomedB341