CmoCh16G003390 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G003390
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTruncated PGN
LocationCmo_Chr16 : 1568833 .. 1569576 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAGCTACTTTCTGCTTCAGTTTTTATGTTTTCCAGTGTCATTTTAAGCTTGTGGAATGTATCAGCTTCATCTGATTTTAATGTTCTTGATTATGGAGCGGTTGGAAATGGAAAAACGGATGATTCACAAGTAATTGCTTTGATTCGGTTTTTGTTTATGTACGTATAGTTCTGTCTTTTCTTATTAGTCTTTCTCGATCTCTTTTTGTGGTGATAAGGCTTTTTTGAAAGTATGGAAAGACGTGTGTGGGGCAACGATAGGCATCCCAACATTGCGTGTACCAATTGGAAAAACTTACCTATTGAAGCCTCTCAAATTCGAGGGCCCTTGTAACCCTAAACGAGTAAATTTTGAGGTAACTATTGCTACTAAAATCGCTTTCGTAATTGTAAGATTCCACATCGGTTGGAAAGGGGAACGAAGCATTCCTTATAGAGGTGTAAAAACCTTTGTTTAGTAAACGTGTTTTAAAACTGTGAAGTTGACGGCGATACATAATGAGTCAAAACTGACCATAGTTACTAGTAGTGAGCTTGAACTGATACACTGTTGTTGTTTCATAGGTTAGAGGAACTATCATGGCTCCGAGCGTGGCTGCATGGCCTAGCCATAACGAAGAAAACTGGATCCAATTCTTGGACATAGCTGGTCTCAATATCAATGGGGCAGGTCAATTCGATGGCCAGAGTTCTTCTTGGTGGAAAGATTGTCATTCAAACTGCACACCTCCAACGGTAA

mRNA sequence

ATGATGAAGCTACTTTCTGCTTCAGTTTTTATGTTTTCCAGTGTCATTTTAAGCTTGTGGAATGTATCAGCTTCATCTGATTTTAATGTTCTTGATTATGGAGCGGTTGGAAATGGAAAAACGGATGATTCACAATCTTTCTCGATCTCTTTTTGTGGTGATAAGGCTTTTTTGAAAGTATGGAAAGACGTGTGTGGGGCAACGATAGGCATCCCAACATTGCGTCTGGTCTCAATATCAATGGGGCAGGTCAATTCGATGGCCAGAGTTCTTCTTGGTGGAAAGATTGTCATTCAAACTGCACACCTCCAACGGTAA

Coding sequence (CDS)

ATGATGAAGCTACTTTCTGCTTCAGTTTTTATGTTTTCCAGTGTCATTTTAAGCTTGTGGAATGTATCAGCTTCATCTGATTTTAATGTTCTTGATTATGGAGCGGTTGGAAATGGAAAAACGGATGATTCACAATCTTTCTCGATCTCTTTTTGTGGTGATAAGGCTTTTTTGAAAGTATGGAAAGACGTGTGTGGGGCAACGATAGGCATCCCAACATTGCGTCTGGTCTCAATATCAATGGGGCAGGTCAATTCGATGGCCAGAGTTCTTCTTGGTGGAAAGATTGTCATTCAAACTGCACACCTCCAACGGTAA
Homology
[Close]
BLAST of CmoCh16G003390 vs. TrEMBL
Match: A0A0A0KZ95_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025750 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.5e-15
Identity = 47/75 (62.67%), Postives = 53/75 (70.67%), Query Frame = 1 

Query: 2  MKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVW 61
          MKLLSA++F++S  ILS W V  SSDFNVLDYGA+GNGKTDDS          KAFLK W
Sbjct: 1  MKLLSAAIFLYSIAILSSWTVLGSSDFNVLDYGAIGNGKTDDS----------KAFLKAW 60

Query: 62 KDVCGATIGIPTLRL 77
           DVCGAT   PTL +
Sbjct: 61 NDVCGATEESPTLHV 65

[Close]
BLAST of CmoCh16G003390 vs. TrEMBL
Match: A0A067JZL5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19407 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-07
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 1 

Query: 1  MMKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKV 60
          M ++L+ ++  F       W V+ASS FNVLDYGA+G+GKTD+SQ          A L+ 
Sbjct: 1  MAQVLTVTILSF------FWIVTASSSFNVLDYGAIGDGKTDNSQ----------AVLRA 58

Query: 61 WKDVCGATIGIPTL 75
          W+D+CGAT G PTL
Sbjct: 61 WEDLCGATRGTPTL 58

[Close]
BLAST of CmoCh16G003390 vs. TrEMBL
Match: A0A0S3RVQ3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G213800 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-06
Identity = 32/70 (45.71%), Postives = 41/70 (58.57%), Query Frame = 1 

Query: 5  LSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDV 64
          L   VF +S+ +     + A   FNV+DYGA+GNG+TDDSQ          AF+K WKD 
Sbjct: 8  LGMCVFAYSACVWGRMELHAGPRFNVIDYGAMGNGETDDSQ----------AFMKAWKDA 67

Query: 65 CGATIGIPTL 75
          C A+ G PTL
Sbjct: 68 CNASNGTPTL 67

[Close]
BLAST of CmoCh16G003390 vs. NCBI nr
Match: gi|778697492|ref|XP_011654334.1| (PREDICTED: probable polygalacturonase At3g15720 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 9.3e-15
Identity = 47/75 (62.67%), Postives = 53/75 (70.67%), Query Frame = 1 

Query: 2  MKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVW 61
          MKLLSA++F++S  ILS W V  SSDFNVLDYGA+GNGKTDDS          KAFLK W
Sbjct: 1  MKLLSAAIFLYSIAILSSWTVLGSSDFNVLDYGAIGNGKTDDS----------KAFLKAW 60

Query: 62 KDVCGATIGIPTLRL 77
           DVCGAT   PTL +
Sbjct: 61 NDVCGATEESPTLHV 65

[Close]
BLAST of CmoCh16G003390 vs. NCBI nr
Match: gi|659108957|ref|XP_008454473.1| (PREDICTED: probable polygalacturonase At3g15720 [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 44/75 (58.67%), Postives = 50/75 (66.67%), Query Frame = 1 

Query: 2  MKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVW 61
          MKLL A++  +S  ILS   V +SSDFNVLDYGA+GNGKTDDS          KAFLK W
Sbjct: 1  MKLLLAAILTYSIAILSSRTVLSSSDFNVLDYGAIGNGKTDDS----------KAFLKAW 60

Query: 62 KDVCGATIGIPTLRL 77
           DVCGAT   PTL +
Sbjct: 61 NDVCGATQDSPTLHV 65

[Close]
BLAST of CmoCh16G003390 vs. NCBI nr
Match: gi|1000944382|ref|XP_002530440.2| (PREDICTED: probable polygalacturonase At3g15720 [Ricinus communis])

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-08
Identity = 34/59 (57.63%), Postives = 39/59 (66.10%), Query Frame = 1 

Query: 20  WNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRLVS 79
           W  +ASS FNVLDY AVG+GKTDDS+           FLK W+DVC AT G+PTL L S
Sbjct: 58  WEAAASSTFNVLDYNAVGDGKTDDSE----------VFLKAWRDVCEATKGMPTLILPS 106

[Close]
BLAST of CmoCh16G003390 vs. NCBI nr
Match: gi|802681849|ref|XP_012082168.1| (PREDICTED: probable polygalacturonase At3g15720 [Jatropha curcas])

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-07
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 1 

Query: 1  MMKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKV 60
          M ++L+ ++  F       W V+ASS FNVLDYGA+G+GKTD+SQ          A L+ 
Sbjct: 1  MAQVLTVTILSF------FWIVTASSSFNVLDYGAIGDGKTDNSQ----------AVLRA 58

Query: 61 WKDVCGATIGIPTL 75
          W+D+CGAT G PTL
Sbjct: 61 WEDLCGATRGTPTL 58

[Close]
BLAST of CmoCh16G003390 vs. NCBI nr
Match: gi|950956020|ref|XP_014496757.1| (PREDICTED: probable polygalacturonase At3g15720 [Vigna radiata var. radiata])

HSP 1 Score: 62.4 bits (150), Expect = 5.5e-07
Identity = 33/70 (47.14%), Postives = 41/70 (58.57%), Query Frame = 1 

Query: 5  LSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDV 64
          L   VF +S  +     + A+  FNV+DYGA+GNG+TDDSQ          AFLK WKD 
Sbjct: 8  LGMCVFAYSPCVWGRMELHAAPRFNVIDYGAIGNGETDDSQ----------AFLKAWKDT 67

Query: 65 CGATIGIPTL 75
          C A+ G PTL
Sbjct: 68 CNASYGTPTL 67

The following BLAST results are available for this feature:
BLAST of CmoCh16G003390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G003390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ95_CUCSA6.5e-1562.67Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025750 PE=3 SV=1[more]
A0A067JZL5_JATCU2.2e-0747.30Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19407 PE=3 SV=1[more]
A0A0S3RVQ3_PHAAN1.5e-0645.71Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G213800 PE=... [more]
BLAST of CmoCh16G003390 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh16G003390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778697492|ref|XP_011654334.1|9.3e-1562.67PREDICTED: probable polygalacturonase At3g15720 [Cucumis sativus][more]
gi|659108957|ref|XP_008454473.1|1.3e-1158.67PREDICTED: probable polygalacturonase At3g15720 [Cucumis melo][more]
gi|1000944382|ref|XP_002530440.2|5.0e-0857.63PREDICTED: probable polygalacturonase At3g15720 [Ricinus communis][more]
gi|802681849|ref|XP_012082168.1|3.2e-0747.30PREDICTED: probable polygalacturonase At3g15720 [Jatropha curcas][more]
gi|950956020|ref|XP_014496757.1|5.5e-0747.14PREDICTED: probable polygalacturonase At3g15720 [Vigna radiata var. radiata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G003390.1CmoCh16G003390.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 1..65
score: 1.1
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 13..47
score: 3.
NoneNo IPR availableunknownCoilCoilcoord: 103..105
scor

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G003390Wax gourdcmowgoB0405
CmoCh16G003390Wax gourdcmowgoB0444
CmoCh16G003390Cucurbita moschata (Rifu)cmocmoB010
CmoCh16G003390Cucurbita moschata (Rifu)cmocmoB096
CmoCh16G003390Cucurbita moschata (Rifu)cmocmoB286
CmoCh16G003390Cucurbita moschata (Rifu)cmocmoB296
CmoCh16G003390Cucumber (Gy14) v1cgycmoB0190
CmoCh16G003390Cucumber (Gy14) v1cgycmoB0219
CmoCh16G003390Cucumber (Gy14) v1cgycmoB0625
CmoCh16G003390Cucumber (Gy14) v1cgycmoB0964
CmoCh16G003390Cucurbita maxima (Rimu)cmacmoB133
CmoCh16G003390Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G003390Cucurbita maxima (Rimu)cmacmoB502
CmoCh16G003390Cucurbita maxima (Rimu)cmacmoB701
CmoCh16G003390Wild cucumber (PI 183967)cmocpiB329
CmoCh16G003390Wild cucumber (PI 183967)cmocpiB336
CmoCh16G003390Wild cucumber (PI 183967)cmocpiB344
CmoCh16G003390Cucumber (Chinese Long) v2cmocuB322
CmoCh16G003390Cucumber (Chinese Long) v2cmocuB328
CmoCh16G003390Cucumber (Chinese Long) v2cmocuB337
CmoCh16G003390Cucumber (Chinese Long) v2cmocuB338
CmoCh16G003390Melon (DHL92) v3.5.1cmomeB304
CmoCh16G003390Melon (DHL92) v3.5.1cmomeB280
CmoCh16G003390Melon (DHL92) v3.5.1cmomeB298
CmoCh16G003390Watermelon (Charleston Gray)cmowcgB273
CmoCh16G003390Watermelon (97103) v1cmowmB287
CmoCh16G003390Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G003390Cucurbita pepo (Zucchini)cmocpeB311
CmoCh16G003390Cucurbita pepo (Zucchini)cmocpeB321
CmoCh16G003390Bottle gourd (USVL1VR-Ls)cmolsiB291
CmoCh16G003390Bottle gourd (USVL1VR-Ls)cmolsiB294
CmoCh16G003390Bottle gourd (USVL1VR-Ls)cmolsiB298
CmoCh16G003390Cucumber (Gy14) v2cgybcmoB465
CmoCh16G003390Cucumber (Gy14) v2cgybcmoB471
CmoCh16G003390Cucumber (Gy14) v2cgybcmoB732
CmoCh16G003390Melon (DHL92) v3.6.1cmomedB349
CmoCh16G003390Melon (DHL92) v3.6.1cmomedB317
CmoCh16G003390Melon (DHL92) v3.6.1cmomedB341
CmoCh16G003390Melon (DHL92) v3.6.1cmomedB342
CmoCh16G003390Silver-seed gourdcarcmoB0258
CmoCh16G003390Silver-seed gourdcarcmoB0402
CmoCh16G003390Silver-seed gourdcarcmoB0509
CmoCh16G003390Cucumber (Chinese Long) v3cmocucB0369
CmoCh16G003390Cucumber (Chinese Long) v3cmocucB0385
CmoCh16G003390Cucumber (Chinese Long) v3cmocucB0391
CmoCh16G003390Cucumber (Chinese Long) v3cmocucB0408
CmoCh16G003390Cucumber (Chinese Long) v3cmocucB0409
CmoCh16G003390Watermelon (97103) v2cmowmbB316
CmoCh16G003390Watermelon (97103) v2cmowmbB333