CmoCh16G002600 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G002600
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Root phototropism protein 3
Location	Cmo_Chr16 : 1150427 .. 1151109 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATCTTTAAAAGATAATCTATTTGCTTTGGTAGCACAGGAGAAGCTCTGTTGGTGGTGCTTCCATGGCGGCCCCATTTTGGAGAAGCGAAAGAGAGGGAGAGCATCTGAAAGAAGCATTATTAATGCAAAAACAAAGCAAAGGGGATGGCAATCAGAATGATCCATCATCTACCCATCACCCCATTTACTTCACACCCACTGAAAAATCAGTGAAGAAGCCGACAATTCAACCACATAATTCCAATCATCCCATGTGGGTTTCGCCTATTTCCCCTCTATATCGCTCTATCTTCTTCTTCCCCCTCTCCTCTTATTCTTCCCCCCTTTCTTTTCATCTGTCACTTTCCGATGTGGGAATCCGAGAATCATTCTGTTGGTTTTGGTGCTGGAGATTACGGCAATGGCGTCCCCCCTTCCGCCAAACACGCCCTCAACACTCACGGCTTCGACCTCAGAGGCAACTCATGGTACGGTTTCTTCTTCTTCTTCTTCTGAACCTTTTGTGGCTGCCATTTTCTCTGAATTTGTTTGATTGTGTTCTGTTGTGGCTGTATTCCTCCACCCTCTATGTGTTCTTGCAGGCATGTTGCTACTGATATCCCTAGTGACCTTTTAGTAAAAGTTGAGGGTGTGAATTTCCATTTGCACAAGGTGTTGTATAATCAATCTCCTCTGTTTTGA

mRNA sequence

CTATCTTTAAAAGATAATCTATTTGCTTTGGTAGCACAGGAGAAGCTCTGTTGGTGGTGCTTCCATGGCGGCCCCATTTTGGAGAAGCGAAAGAGAGGGAGAGCATCTGAAAGAAGCATTATTAATGCAAAAACAAAGCAAAGGGGATGGCAATCAGAATGATCCATCATCTACCCATCACCCCATTTACTTCACACCCACTGAAAAATCAGTGAAGAAGCCGACAATTCAACCACATAATTCCAATCATCCCATGTGGGTTTCGCCTATTTCCCCTCTATATCGCTCTATCTTCTTCTTCCCCCTCTCCTCTTATTCTTCCCCCCTTTCTTTTCATCTGTCACTTTCCGATGTGGGAATCCGAGAATCATTCTGTTGGTTTTGGTGCTGGAGATTACGGCAATGGCGTCCCCCCTTCCGCCAAACACGCCCTCAACACTCACGGCTTCGACCTCAGAGGCAACTCATGGCATGTTGCTACTGATATCCCTAGTGACCTTTTAGTAAAAGTTGAGGGTGTGAATTTCCATTTGCACAAGGTGTTGTATAATCAATCTCCTCTGTTTTGA

Coding sequence (CDS)

ATGTGGGAATCCGAGAATCATTCTGTTGGTTTTGGTGCTGGAGATTACGGCAATGGCGTCCCCCCTTCCGCCAAACACGCCCTCAACACTCACGGCTTCGACCTCAGAGGCAACTCATGGCATGTTGCTACTGATATCCCTAGTGACCTTTTAGTAAAAGTTGAGGGTGTGAATTTCCATTTGCACAAGGTGTTGTATAATCAATCTCCTCTGTTTTGA

Homology

[Close]

BLAST of CmoCh16G002600 vs. Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-14
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1


Query: 1  MWESENHS-VGFGAG---DYGNGVPPSAKHA-LNTHGFDLRGNSWHVATDIPSDLLVKVE 60
          MWESE+   VG G G   +YG+GV  S KH  + T GF+LRG SW VATDIPSDLLVK+ 
Sbjct: 2  MWESESDGGVGVGGGGGREYGDGVLSSNKHGGVKTDGFELRGQSWFVATDIPSDLLVKIG 61

Query: 61 GVNFHLHK 64
           +NFHLHK
Sbjct: 62 DMNFHLHK 69

[Close]

BLAST of CmoCh16G002600 vs. Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.6e-08
Identity = 34/66 (51.52%), Postives = 39/66 (59.09%), Query Frame = 1


Query: 1  MWESENHSVGFGAGDY---GNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGV 60
          MWESE+ S G   G     G G     + AL   GF  R  SW+V +DIPSDLLVKV  V
Sbjct: 1  MWESESESHGGERGLVPVGGGGGSGRHEAALKNDGFVRRDRSWYVNSDIPSDLLVKVGDV 60

Query: 61 NFHLHK 64
          NF+LHK
Sbjct: 61 NFYLHK 66

[Close]

BLAST of CmoCh16G002600 vs. TrEMBL
Match: A0A0A0KZC3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G113150 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-20
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 1


Query: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60
          MWESEN S+   A  Y NGVPPSAKHAL T GF+LRGNSW+VATDIPSDLLV+VEGVNFH
Sbjct: 1  MWESENDSIAV-ARHYANGVPPSAKHALKTDGFELRGNSWYVATDIPSDLLVQVEGVNFH 60

Query: 61 LHK 64
          LHK
Sbjct: 61 LHK 62

[Close]

BLAST of CmoCh16G002600 vs. TrEMBL
Match: M5VMQ4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002411mg PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 9.0e-16
Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 1


Query: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60
          MW+SE  SVG    DYGNGV  S+KH++ T GF+L+G+SW+VATDIPSDLLV+V  VNFH
Sbjct: 1  MWDSETESVG--GRDYGNGVLSSSKHSVKTDGFELKGSSWYVATDIPSDLLVQVGDVNFH 60

Query: 61 LHK 64
          LHK
Sbjct: 61 LHK 61

[Close]

BLAST of CmoCh16G002600 vs. TrEMBL
Match: A0A0A0K7H7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G066280 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.9e-15
Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 1


Query: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60
          MWESE+ SV  G G YG+GV    KH+L T GF+LRG SWHV TDIPSDLLV+VE V+FH
Sbjct: 1  MWESESESVR-GRG-YGDGVLSPTKHSLKTDGFELRGRSWHVGTDIPSDLLVQVEDVDFH 60

Query: 61 LHKVL 66
          LHK L
Sbjct: 61 LHKYL 63

[Close]

BLAST of CmoCh16G002600 vs. TrEMBL
Match: A0A067L8X4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24949 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-14
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 1


Query: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60
          MW+SE+ S+G  A DYGNGV  SAK+ + T GF+LRG SW+VATDIPSD L+++  VNF+
Sbjct: 1  MWDSESESIG--ARDYGNGVLSSAKYGVKTDGFELRGQSWYVATDIPSDFLIQIGDVNFN 60

Query: 61 LHK 64
          LHK
Sbjct: 61 LHK 61

[Close]

BLAST of CmoCh16G002600 vs. TrEMBL
Match: A0A0D2NH13_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G224200 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-14
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 1


Query: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60
          MWESE  SV     +YGNGV  S KH + T GF+LRG SW+VATDIPSDLLV+V  VNFH
Sbjct: 1  MWESETESVR--GREYGNGVLSSNKHGVKTDGFELRGQSWYVATDIPSDLLVQVGDVNFH 60

Query: 61 LHK 64
          LHK
Sbjct: 61 LHK 61

[Close]

BLAST of CmoCh16G002600 vs. TAIR10
Match: AT5G64330.1 (AT5G64330.1 Phototropic-responsive NPH3 family protein)

HSP 1 Score: 79.7 bits (195), Expect = 8.0e-16
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1


Query: 1  MWESENHS-VGFGAG---DYGNGVPPSAKHA-LNTHGFDLRGNSWHVATDIPSDLLVKVE 60
          MWESE+   VG G G   +YG+GV  S KH  + T GF+LRG SW VATDIPSDLLVK+ 
Sbjct: 2  MWESESDGGVGVGGGGGREYGDGVLSSNKHGGVKTDGFELRGQSWFVATDIPSDLLVKIG 61

Query: 61 GVNFHLHK 64
           +NFHLHK
Sbjct: 62 DMNFHLHK 69

[Close]

BLAST of CmoCh16G002600 vs. NCBI nr
Match: gi|659125849|ref|XP_008462887.1| (PREDICTED: root phototropism protein 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 3.5e-21
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 1


Query: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60
          MWESEN S+   A DY NGVPPSAKHAL T GF+LRGNSW+VATDIPSDLLV+VEGVNFH
Sbjct: 1  MWESENDSIAV-ARDYANGVPPSAKHALKTDGFELRGNSWYVATDIPSDLLVQVEGVNFH 60

Query: 61 LHK 64
          LHK
Sbjct: 61 LHK 62

[Close]

BLAST of CmoCh16G002600 vs. NCBI nr
Match: gi|659125847|ref|XP_008462886.1| (PREDICTED: root phototropism protein 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 3.5e-21
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 1


Query: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60
          MWESEN S+   A DY NGVPPSAKHAL T GF+LRGNSW+VATDIPSDLLV+VEGVNFH
Sbjct: 1  MWESENDSIAV-ARDYANGVPPSAKHALKTDGFELRGNSWYVATDIPSDLLVQVEGVNFH 60

Query: 61 LHK 64
          LHK
Sbjct: 61 LHK 62

[Close]

BLAST of CmoCh16G002600 vs. NCBI nr
Match: gi|449438761|ref|XP_004137156.1| (PREDICTED: root phototropism protein 3-like isoform X1 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-20
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 1


Query: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60
          MWESEN S+   A  Y NGVPPSAKHAL T GF+LRGNSW+VATDIPSDLLV+VEGVNFH
Sbjct: 1  MWESENDSIAV-ARHYANGVPPSAKHALKTDGFELRGNSWYVATDIPSDLLVQVEGVNFH 60

Query: 61 LHK 64
          LHK
Sbjct: 61 LHK 62

[Close]

BLAST of CmoCh16G002600 vs. NCBI nr
Match: gi|778692022|ref|XP_011653391.1| (PREDICTED: root phototropism protein 3-like isoform X2 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-20
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 1


Query: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60
          MWESEN S+   A  Y NGVPPSAKHAL T GF+LRGNSW+VATDIPSDLLV+VEGVNFH
Sbjct: 1  MWESENDSIAV-ARHYANGVPPSAKHALKTDGFELRGNSWYVATDIPSDLLVQVEGVNFH 60

Query: 61 LHK 64
          LHK
Sbjct: 61 LHK 62

[Close]

BLAST of CmoCh16G002600 vs. NCBI nr
Match: gi|729301232|ref|XP_010520803.1| (PREDICTED: root phototropism protein 3 [Tarenaya hassleriana])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-16
Identity = 44/64 (68.75%), Postives = 49/64 (76.56%), Query Frame = 1


Query: 1  MWESENHSVGFGAG-DYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNF 60
          MWESE+   G G G +YGNGV  S KH + T GF+LRG SWHVATDIPSDLLVK+  VNF
Sbjct: 1  MWESESDVAGGGGGREYGNGVSSSNKHGVKTDGFELRGQSWHVATDIPSDLLVKIGDVNF 60

Query: 61 HLHK 64
          HLHK
Sbjct: 61 HLHK 64

The following BLAST results are available for this feature:

BLAST of CmoCh16G002600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPT3_ARATH	1.4e-14	61.76	Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2	[more]
NPH3_ORYSJ	2.6e-08	51.52	Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 S...	[more]

BLAST of CmoCh16G002600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZC3_CUCSA	1.6e-20	79.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G113150 PE=4 SV=1	[more]
M5VMQ4_PRUPE	9.0e-16	66.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002411mg PE=4 SV=1	[more]
A0A0A0K7H7_CUCSA	9.9e-15	67.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G066280 PE=4 SV=1	[more]
A0A067L8X4_JATCU	1.7e-14	61.90	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24949 PE=4 SV=1	[more]
A0A0D2NH13_GOSRA	1.7e-14	66.67	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G224200 PE=4 SV=1	[more]

BLAST of CmoCh16G002600 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64330.1	8.0e-16	61.76	Phototropic-responsive NPH3 family protein	[more]

BLAST of CmoCh16G002600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125849\|ref\|XP_008462887.1\|	3.5e-21	80.95	PREDICTED: root phototropism protein 3-like isoform X2 [Cucumis melo]	[more]
gi\|659125847\|ref\|XP_008462886.1\|	3.5e-21	80.95	PREDICTED: root phototropism protein 3-like isoform X1 [Cucumis melo]	[more]
gi\|449438761\|ref\|XP_004137156.1\|	2.3e-20	79.37	PREDICTED: root phototropism protein 3-like isoform X1 [Cucumis sativus]	[more]
gi\|778692022\|ref\|XP_011653391.1\|	2.3e-20	79.37	PREDICTED: root phototropism protein 3-like isoform X2 [Cucumis sativus]	[more]
gi\|729301232\|ref\|XP_010520803.1\|	1.2e-16	68.75	PREDICTED: root phototropism protein 3 [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

Vocabulary: **Biological Process**
Term	Definition
GO:0016567	protein ubiquitination

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009638	phototropism
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G002600.1	CmoCh16G002600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32370	FAMILY NOT NAMED	coord: 16..63 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G002600	Melon (DHL92) v3.6.1	cmomedB339
CmoCh16G002600	Melon (DHL92) v3.6.1	cmomedB343
CmoCh16G002600	Silver-seed gourd	carcmoB0509
CmoCh16G002600	Silver-seed gourd	carcmoB0510
CmoCh16G002600	Silver-seed gourd	carcmoB1175
CmoCh16G002600	Cucumber (Chinese Long) v3	cmocucB0384
CmoCh16G002600	Cucumber (Chinese Long) v3	cmocucB0389
CmoCh16G002600	Watermelon (97103) v2	cmowmbB316
CmoCh16G002600	Watermelon (97103) v2	cmowmbB323
CmoCh16G002600	Watermelon (97103) v2	cmowmbB337
CmoCh16G002600	Wax gourd	cmowgoB0405
CmoCh16G002600	Wax gourd	cmowgoB0420
CmoCh16G002600	Wax gourd	cmowgoB0438
CmoCh16G002600	Cucurbita moschata (Rifu)	cmocmoB286
CmoCh16G002600	Cucumber (Gy14) v1	cgycmoB0189
CmoCh16G002600	Cucumber (Gy14) v1	cgycmoB1100
CmoCh16G002600	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G002600	Cucurbita maxima (Rimu)	cmacmoB325
CmoCh16G002600	Cucurbita maxima (Rimu)	cmacmoB701
CmoCh16G002600	Wild cucumber (PI 183967)	cmocpiB328
CmoCh16G002600	Wild cucumber (PI 183967)	cmocpiB333
CmoCh16G002600	Cucumber (Chinese Long) v2	cmocuB321
CmoCh16G002600	Cucumber (Chinese Long) v2	cmocuB326
CmoCh16G002600	Melon (DHL92) v3.5.1	cmomeB296
CmoCh16G002600	Melon (DHL92) v3.5.1	cmomeB299
CmoCh16G002600	Watermelon (Charleston Gray)	cmowcgB279
CmoCh16G002600	Watermelon (Charleston Gray)	cmowcgB295
CmoCh16G002600	Watermelon (97103) v1	cmowmB298
CmoCh16G002600	Watermelon (97103) v1	cmowmB307
CmoCh16G002600	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G002600	Cucurbita pepo (Zucchini)	cmocpeB311
CmoCh16G002600	Bottle gourd (USVL1VR-Ls)	cmolsiB294
CmoCh16G002600	Bottle gourd (USVL1VR-Ls)	cmolsiB295
CmoCh16G002600	Bottle gourd (USVL1VR-Ls)	cmolsiB312
CmoCh16G002600	Cucumber (Gy14) v2	cgybcmoB464
CmoCh16G002600	Cucumber (Gy14) v2	cgybcmoB468