CmoCh16G002580 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G002580
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr16 : 1144474 .. 1147607 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGGTGGTATTCGTCCCCAGAGTTGGTTCCTTGAGAGATCAAGAGACTCCAAATCCTTCATGCCTCCGATTCTGTCTGGGATGGTTCCTCTTAGATGGTTTATTGAGAGATTGAGAGACCTCAGTGCAAAGAGGTTGGTGATTTCTTCAGGGATTTCTCCGGATAAGTTGTTGTTAGAGAGGTCGATGCTAGTCATGAGTGCCAAGATGGTATCATAATAGAGCTCGCTTCCTTTAGTTCTCACATATGCATTCTCGAGAATCGCGATAGCGTAGCCTTTGTTAAAGATAAAATGAAAACGTTGTGATAGGTCCCTCTTGGTAGCCATGGACGTAAAATTGCCAAAACAATGAGGTATAGACCCACTTAAGTTGTTATTGCTGATGTCCATGATTTGAAGATATGAAAGATGACAAAGTTCCTTCGGGATTAGGCCACTTATCTCATTGTTCCCAAGGTTGAGAGTCATTAGTTTCAATAGGCTCATCCCAATCCATGCTGGTATTTTTCCATGGAAGGCATTTAGACTGAGATCTAAAGCTCTCAACTCCAAGCAACTCTGAAGAGCCCGAGGAATCACTCCGGAAAGGCTGTTGTTTCGTAAATGCAACGATACTAATATGGTTAGAGACCCCATGGAGGTTGGTATCATGCCAGACAAATTATTGTTGTCCAAGCTTAGAACTTGTAGTGATTCCCAATTCTCCCAGCAGTTTGGAATGTTTCCTGATAAAAAATTGTTACCAAGATGAAGAACAGAGATCCCTAAGAACTGAGAACGACATAGGAAATGGGTAATGTTTCCAGAGAAGAAATTGTTTGAAAGATCAAGCTGAGCAGGGGAGGATACTAAACGAGGCAATGAACCATGGAAAAGATTGGAGCGAAGGTCCATGATTGAGATATTACCCGTGAAAAGAATATGAGGAAGTGTTCCATAGAGTTGGTTGTGAGAGAGATTCAGGTAAATACACTGTGAAGACCAACTCCAAAACCAATCTGGAACGGTGTCTGAAAGTTTAGCATTAGAGAGATCAACCCAACTTAACTTTTTTTGGGATTTGAGCCATTTGGGGAATTGGGGTCCTACGATGCAAGATCTCAGCCTTATTTCGTAAAGATTAAAAGGGGGAATCCATTCTGTTGCAAAATTCAATGTGAAATTATTATCATCCATTTCCAAAATCTTTAGATTTGCTAGATTTGCAAAGTGATCCTCCAATACATTGCCTTCCAAGTGATTATCAGATATTCTAAGTACTTGCANTAATGTTTCTCATCTTTGGCTTAAAGCCCAAAAATACATTTTTTCCATTGAGTTTCAGGGCATTTGGAAGCTTGATGACATGTGTTGTAAAGAACAAAACAGAACAAGAGAGAACAAGAAGCACATCGCTGAGCTATGCGAGTTTGTGGCATACAGACAAGAAGTACTTTACTCTCCAAGCCTTACTGAGTAACAATGGACCCCAAATCCCCCAAAACCCAAACACAAACCCAATTCCCATGCTCAGATAAAACCACCCATCAATAATACTTCCTCCCTCACTTTCTTTTCCATTTTCATTCCCAAATTTTGGGGTGACACCCTCCATTCCGCAGCTCTTGTTTAATGGATCTCCACACAGCTCATTGCCAATAAAGCTAAACGGAGTAAACCTTTGGAGCTGAGTACCTGTCGGAATTGGACCCGACAAGTTATTGTAAGACAAATTCAAGTAACTTAGGAACGATAACTCCGACATGGACGGTGGTATTCGTCCCCAGAGTTGGTTCCTTGAGAGATCAAGAGACTCCAAATCCTTCATGCCTCCGATTCTGTCTGGGATGGTTCCTCTTAGATGGTTTATTGAGAGATTGAGAGACCTCAGTGCAAAGAGGTTGGTGATTTCTTCAGGGATTTCTCCGGATAAGTTGTTGTTAGAGAGGTCGATGCTAGTCATGAGTGCCAAGATGGTATCATAATAGAGCTCGCTTCCTTTAGTTCTCACATATGCATTCTCGAGAATCGCGATAGCGTAGCCTTTGTTAAAGATAAAATGAAAACGTTGTGATAGGTCCCTCTTGGTAGCCATGGACGTAAAATTGCCAAAACAATGAGGTATAGACCCACTTAAGTTGTTATTGCTGATGTCCATGATTTGAAGATATGAAAGATGACAAAGTTCCTTCGGGATTAGGCCACTTATCTCATTGTTCCCAAGGTTGAGAGTCATTAGTTTCAATAGGCTCATCCCAATCCATGCTGGTATTTTTCCATGGAAGGCATTTAGACTGAGATCTAAAGCTCTCAACTCCAAGCAACTCTGAAGAGCCCGAGGAATCACTCCGGAAAGGCTGTTGTTTCGTAAATGCAACGATACTAATATGGTTAGAGACCCCATGGAGGTTGGTATCATGCCAGACAAATTATTGTTGTCCAAGCTTAGAACTTGTAGTGATTCCCAATTCTCCCAGCAGTTTGGAATGTTTCCTGATAAAAAATTGTTACCAAGATGAAGAACAGAGATCCCTAAGAACTGAGAACGACATAGGAAATGGGTAATGTTTCCAGAGAAGAAATTGTTTGAAAGATCAAGCTGAGCAGGGGAGGATACTAAACGAGGCAATGAACCATGGAAAAGATTGGAGCGAAGGTCCATGATTGAGATATTACCCGTGAAAAGAATATGAGGAAGTGTTCCATAGAGTTGGTTGTGAGAGAGATTCAGGTAAATACACTGTGAAGACCAACTCCAAAACCAATCTGGAACGGTGTCTGAAAGTTTAGCATTAGAGAGATCAACCCAACTTAACTTTTTTTGGGATTTGAGCCATTTGGGGAATTGGGGTCCTACGATGCAAGATCTCAGCCTTATTTCGTAAAGATTAAAAGGGGGAATCCATTCTGTTGCAAAATTCAATGTGAAATTATTATCATCCATTTCCAAAATCTTTAGATTTGCTAGATTTGCAAAGTGATCCTCCAATACATTGCCTTCCAAGTGATTATCAGATATTCTAAGTACTTGCAAACTTGATAGCAATCCCATACTCTTTGGAAGAGTTCCGCTTATTTTATTGTATTGAATGTATAGCATTGTTAATGAAGATAAATTTCCTATGGACTCTGGAATAGGACCAGTGATCG

mRNA sequence

ATGGACGGTGGTATTCGTCCCCAGAGTTGGTTCCTTGAGAGATCAAGAGACTCCAAATCCTTCATGCCTCCGATTCTGTCTGGGATGGTTCCTCTTAGATGGTTTATTGAGAGATTGAGAGACCTCAGTGCAAAGAGGTTGGTGATTTCTTCAGGGATTTCTCCGGATAAGTTGTTGTTAGAGAGGTCGATGCTAGTCATGAGTGCCAAGATGGGCATTTGGAAGCTTGATGACATGTGTTGTAAAGAACAAAACAGAACAAGAGAGAACAAGAAGCACATCGCTGAGCTATGCGAGTTTGTGGCATACAGACAAGAAGTACTTTACTCTCCAAGCCTTACTGAGTAACAATGGACCCCAAATCCCCCAAAACCCAAACACAAACCCAATTCCCATGCTCAGATAAAACCACCCATCAATAATACTTCCTCCCTCACTTTCTTTTCCATTTTCATTCCCAAATTTTGGGGTGACACCCTCCATTCCGCAGCTCTTGTTTAATGGATCTCCACACAGCTCATTGCCAATAAAGCTAAACGGAGTAAACCTTTGGAGCTGAGTACCTGTCGGAATTGGACCCGACAAGTTATTGTAAGACAAATTCAAGTAACTTAGGAACGATAACTCCGACATGGACGGTGGTATTCGTCCCCAGAGTTGGTTCCTTGAGAGATCAAGAGACTCCAAATCCTTCATGCCTCCGATTCTGTCTGGGATGGTTCCTCTTAGATGGTTTATTGAGAGATTGAGAGACCTCAGTGCAAAGAGGTTGGTGATTTCTTCAGGGATTTCTCCGGATAAGTTGTTGTTAGAGAGGTCGATGCTAGTCATGAGTGCCAAGATGGTATCATAATAGAGCTCGCTTCCTTTAGTTCTCACATATGCATTCTCGAGAATCGCGATAGCGTAGCCTTTGTTAAAGATAAAATGAAAACGTTGTGATAGGTCCCTCTTGGTAGCCATGGACGTAAAATTGCCAAAACAATGAGGTATAGACCCACTTAAGTTGTTATTGCTGATGTCCATGATTTGAAGATATGAAAGATGACAAAGTTCCTTCGGGATTAGGCCACTTATCTCATTGTTCCCAAGGTTGAGAGTCATTAGTTTCAATAGGCTCATCCCAATCCATGCTGGTATTTTTCCATGGAAGGCATTTAGACTGAGATCTAAAGCTCTCAACTCCAAGCAACTCTGAAGAGCCCGAGGAATCACTCCGGAAAGGCTGTTGTTTCGTAAATGCAACGATACTAATATGGTTAGAGACCCCATGGAGGTTGGTATCATGCCAGACAAATTATTGTTGTCCAAGCTTAGAACTTGTAGTGATTCCCAATTCTCCCAGCAGTTTGGAATGTTTCCTGATAAAAAATTGTTACCAAGATGAAGAACAGAGATCCCTAAGAACTGAGAACGACATAGGAAATGGGTAATGTTTCCAGAGAAGAAATTGTTTGAAAGATCAAGCTGAGCAGGGGAGGATACTAAACGAGGCAATGAACCATGGAAAAGATTGGAGCGAAGGTCCATGATTGAGATATTACCCGTGAAAAGAATATGAGGAAGTGTTCCATAGAGTTGGTTGTGAGAGAGATTCAGGTAAATACACTGTGAAGACCAACTCCAAAACCAATCTGGAACGGTGTCTGAAAGTTTAGCATTAGAGAGATCAACCCAACTTAACTTTTTTTGGGATTTGAGCCATTTGGGGAATTGGGGTCCTACGATGCAAGATCTCAGCCTTATTTCGTAAAGATTAAAAGGGGGAATCCATTCTGTTGCAAAATTCAATGTGAAATTATTATCATCCATTTCCAAAATCTTTAGATTTGCTAGATTTGCAAAGTGATCCTCCAATACATTGCCTTCCAAGTGATTATCAGATATTCTAAGTACTTGCAAACTTGATAGCAATCCCATACTCTTTGGAAGAGTTCCGCTTATTTTATTGTATTGAATGTATAGCATTGTTAATGAAGATAAATTTCCTATGGACTCTGGAATAGGACCAGTGATCG

Coding sequence (CDS)

ATGGACGGTGGTATTCGTCCCCAGAGTTGGTTCCTTGAGAGATCAAGAGACTCCAAATCCTTCATGCCTCCGATTCTGTCTGGGATGGTTCCTCTTAGATGGTTTATTGAGAGATTGAGAGACCTCAGTGCAAAGAGGTTGGTGATTTCTTCAGGGATTTCTCCGGATAAGTTGTTGTTAGAGAGGTCGATGCTAGTCATGAGTGCCAAGATGGGCATTTGGAAGCTTGATGACATGTGTTGTAAAGAACAAAACAGAACAAGAGAGAACAAGAAGCACATCGCTGAGCTATGCGAGTTTGTGGCATACAGACAAGAAGTACTTTACTCTCCAAGCCTTACTGAGTAA
Homology
[Close]
BLAST of CmoCh16G002580 vs. NCBI nr
Match: gi|302143759|emb|CBI22620.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 65.1 bits (157), Expect = 9.3e-08
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 1 

Query: 12 LERSRDSKSFMPPILSGMVPLRWFIERLRDLSAKRLVISSGISPDKLLLERSM 65
          +ERSRDS   M PI +G+ P RW ++R +++   R V SSGISPD LLLERSM
Sbjct: 1  MERSRDSSDVMAPIFTGIFPWRWLLDRFKNIKPWRSVSSSGISPDNLLLERSM 53

The following BLAST results are available for this feature:
BLAST of CmoCh16G002580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002580 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|302143759|emb|CBI22620.3|9.3e-0856.60unnamed protein product [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G002580.1CmoCh16G002580.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G002580Wax gourdcmowgoB0438
CmoCh16G002580Cucurbita moschata (Rifu)cmocmoB286
CmoCh16G002580Cucumber (Gy14) v1cgycmoB0189
CmoCh16G002580Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G002580Cucurbita maxima (Rimu)cmacmoB701
CmoCh16G002580Wild cucumber (PI 183967)cmocpiB328
CmoCh16G002580Cucumber (Chinese Long) v2cmocuB321
CmoCh16G002580Melon (DHL92) v3.5.1cmomeB299
CmoCh16G002580Watermelon (Charleston Gray)cmowcgB279
CmoCh16G002580Watermelon (Charleston Gray)cmowcgB295
CmoCh16G002580Watermelon (97103) v1cmowmB307
CmoCh16G002580Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G002580Cucurbita pepo (Zucchini)cmocpeB311
CmoCh16G002580Bottle gourd (USVL1VR-Ls)cmolsiB294
CmoCh16G002580Bottle gourd (USVL1VR-Ls)cmolsiB312
CmoCh16G002580Cucumber (Gy14) v2cgybcmoB464
CmoCh16G002580Melon (DHL92) v3.6.1cmomedB339
CmoCh16G002580Melon (DHL92) v3.6.1cmomedB343
CmoCh16G002580Silver-seed gourdcarcmoB0509
CmoCh16G002580Silver-seed gourdcarcmoB1175
CmoCh16G002580Cucumber (Chinese Long) v3cmocucB0384
CmoCh16G002580Watermelon (97103) v2cmowmbB337