CmoCh16G002470 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G002470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr16 : 1088807 .. 1090486 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAACTCTTTTTTTTTTTTTTTTTTTTCTTTTTTGTCTTCCTTTCTTCCTTATGCAACCTACTTTTATTGTAATTAGTATATTATCACCTTTATAATAAGATAAACTTGATTCAAGCATCATCAGTCTGAAAGCTGAAGATTAATCCTGGATCTTGAGTGTGTCGATGAAGCTCTTTCCTTCTGCAAGATCGTTGCTGGAGAGAAATTTGAGAAAATCATTGAAGCTGCTCTCTTTATACTTAATAGGATTTTGTTCATCCACAAGCTCTTCTGCAGGCTTCATTTTCTCGTCCATTCCCAAGCTGTGTAGACTGGAAATGGAGATTCTTGTTCTCTCAGAATTGACAATGGCTCTGTGGACGACACCCTTGTAAAGCCCATTGCTTAGAACCTCCACATGATCGCCCACATGGACCTGCAGACTGCCATCAACATTAGGAACCATCTTCCATTTCCCATCAGCCCGGTCCATGATTTCAAGTCCCTGGCTGCTTTGCAGAATTGTGGTTATGCAGCTGTAGTCTGTATGTGGTGGCAACCCAAGTGCGACCCCTGGCTGTGGACATGGCGGGTAGCAGTTTACTGCCACTACCTGGACTCCTTCAGCCATTTTGCTGCTGAGGTATGTTGGTCTTAAACCCAAGCTTTCAGTTATGGCTTCCTCTATCTCTAAGCTTACTTTTCTCACCTCCTTGGTGTATTGTCCCATCTTTTCCCTGAAACGGTCATACACATATATATATATATAATATGTATATATATACATGTAAAACACAAGGACATGTCTCTGAAGAACGTATGCACCTAGGATCTTATAAAATTTCAACTCATATGTGGTTTTCTCAAAGTAAGAGATTAAATAATAGTTTTTTTTGGGGGGGATGATTTTTATATTGATATTTTAATCAGAGATGTCCATATTTTTGTCGGTAAGTAGTGCTTTCTGTCCTGTTTTGATGGTCATTTATTGGTGAGTGCATGTCAAGTCCTATATTTATGGTTCATTGTAGAAGAATGCTCAAGTATGCTGAGTATGCATAAAAAGAGTCCAAACTTTTAGACCATACTCAATGTTAGCATAATTAAAAATAGCATTGTTAGCTGAAGTTCTGGTTCATAGGCGTCAGCATATGCATAGCGGTGATCTCTTTGGCGGTCCAATGGTTTTATTGTATCTTTCTGTTGAATTTCATTGTACAGCCTTCACATGTAAGTAAATTTTGCATGGTAATCAGGAAAAGAAAAAAAATGGAAATTGGGTCAGAAGTGGAGATGGAGAATTAAAATATTGAGTTACCTATAAGTATGTGGATTGGTGGGCCAGGAGTCTACCCAATCTTCCAATGGATGAGCGTAGTGTTTGAGGAAAACTCTCCAAAACTTTATTTTGTCTACTCCATCTTTCAAGCTTGTTCCATACCTGACTGCTTTGCTAACATCATCTGACTTATACTTCATCTTCTCCTTTAGTGGTAAGTTAAAGAACTCCCTGGCTTGGTTTAGTGCTTCCTCCATCACCGTTTTGCTGATTCCATGATTGATTATCTGAAGAAAAACAAATAGAAGTTAAGAGCTAGCTAATATAAAAGAGGTAGGTTGCTTGAAACTTTACCTGAAAGAAGCCGAGGCTAATGCAAGCTTTTCTGAGCGCTTCAATGGTGAGGGACCTTTGAGCTGA

mRNA sequence

AAAAACTCTTTTTTTTTTTTTTTTTTTTCTTTTTTGTCTTCCTTTCTTCCTTATGCAACCTACTTTTATTGTAATTAGTATATTATCACCTTTATAATAAGATAAACTTGATTCAAGCATCATCAGTCTGAAAGCTGAAGATTAATCCTGGATCTTGAGTGTGTCGATGAAGCTCTTTCCTTCTGCAAGATCGTTGCTGGAGAGAAATTTGAGAAAATCATTGAAGCTGCTCTCTTTATACTTAATAGGATTTTGTTCATCCACAAGCTCTTCTGCAGGCTTCATTTTCTCGTCCATTCCCAAGCTGTGTAGACTGGAAATGGAGATTCTTGTTCTCTCAGAATTGACAATGGCTCTGTGGACGACACCCTTGTAAAGCCCATTGCTTAGAACCTCCACATGATCGCCCACATGGACCTGCAGACTGCCATCAACATTAGGAACCATCTTCCATTTCCCATCAGCCCGGTCCATGATTTCAAGTCCCTGGCTGCTTTGCAGAATTGTGGTTATGCAGCTGTAGTCTGTATGTGGTGGCAACCCAAGTGCGACCCCTGGCTGTGGACATGGCGGGTAGCAGTTTACTGCCACTACCTGGACTCCTTCAGCCATTTTGCTGCTGAGCTTGTTCCATACCTGACTGCTTTGCTAACATCATCTGACTTATACTTCATCTTCTCCTTTAGTGGTTGCTTGAAACTTTACCTGAAAGAAGCCGAGGCTAATGCAAGCTTTTCTGAGCGCTTCAATGGTGAGGGACCTTTGAGCTGA

Coding sequence (CDS)

ATGATCGCCCACATGGACCTGCAGACTGCCATCAACATTAGGAACCATCTTCCATTTCCCATCAGCCCGGTCCATGATTTCAAGTCCCTGGCTGCTTTGCAGAATTGTGGTTATGCAGCTGTAGTCTGTATGTGGTGGCAACCCAAGTGCGACCCCTGGCTGTGGACATGGCGGGTAGCAGTTTACTGCCACTACCTGGACTCCTTCAGCCATTTTGCTGCTGAGCTTGTTCCATACCTGACTGCTTTGCTAACATCATCTGACTTATACTTCATCTTCTCCTTTAGTGGTTGCTTGAAACTTTACCTGAAAGAAGCCGAGGCTAATGCAAGCTTTTCTGAGCGCTTCAATGGTGAGGGACCTTTGAGCTGA
Homology
[Close]
BLAST of CmoCh16G002470 vs. TrEMBL
Match: A0A0A0KXN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025090 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-32
Identity = 61/76 (80.26%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 1   MIAHMDLQTAINIRNHLPFPISPVHDFKSLAALQNCGYAAVVCMWWQPKCDPWLWTWRVA 60
           MIAHMDLQ+ IN+ +HLP PIS VHDFK+LAAL+NCGYA VVCMWWQP+CDPWLWTW +A
Sbjct: 49  MIAHMDLQSTINLWDHLPCPISWVHDFKALAALKNCGYATVVCMWWQPECDPWLWTWGIA 108

Query: 61  VYCHYLDSFSHFAAEL 77
           +YCHYLDSFSHFAAE+
Sbjct: 109 IYCHYLDSFSHFAAEV 124

[Close]
BLAST of CmoCh16G002470 vs. NCBI nr
Match: gi|700198019|gb|KGN53177.1| (hypothetical protein Csa_4G025090 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 1.5e-32
Identity = 61/76 (80.26%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 1   MIAHMDLQTAINIRNHLPFPISPVHDFKSLAALQNCGYAAVVCMWWQPKCDPWLWTWRVA 60
           MIAHMDLQ+ IN+ +HLP PIS VHDFK+LAAL+NCGYA VVCMWWQP+CDPWLWTW +A
Sbjct: 49  MIAHMDLQSTINLWDHLPCPISWVHDFKALAALKNCGYATVVCMWWQPECDPWLWTWGIA 108

Query: 61  VYCHYLDSFSHFAAEL 77
           +YCHYLDSFSHFAAE+
Sbjct: 109 IYCHYLDSFSHFAAEV 124

The following BLAST results are available for this feature:
BLAST of CmoCh16G002470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXN7_CUCSA1.1e-3280.26Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025090 PE=4 SV=1[more]
BLAST of CmoCh16G002470 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198019|gb|KGN53177.1|1.5e-3280.26hypothetical protein Csa_4G025090 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G002470.1CmoCh16G002470.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G002470Csa4G025090Cucumber (Chinese Long) v2cmocuB321
CmoCh16G002470ClCG07G017120Watermelon (Charleston Gray)cmowcgB295
CmoCh16G002470Lsi07G001300Bottle gourd (USVL1VR-Ls)cmolsiB312
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G002470Cucumber (Gy14) v2cgybcmoB464
CmoCh16G002470Cucumber (Gy14) v2cgybcmoB598
CmoCh16G002470Melon (DHL92) v3.6.1cmomedB343
CmoCh16G002470Silver-seed gourdcarcmoB0509
CmoCh16G002470Silver-seed gourdcarcmoB0967
CmoCh16G002470Silver-seed gourdcarcmoB1175
CmoCh16G002470Cucumber (Chinese Long) v3cmocucB0384
CmoCh16G002470Cucumber (Chinese Long) v3cmocucB0402
CmoCh16G002470Watermelon (97103) v2cmowmbB312
CmoCh16G002470Watermelon (97103) v2cmowmbB337
CmoCh16G002470Wax gourdcmowgoB0438
CmoCh16G002470Cucurbita moschata (Rifu)cmocmoB280
CmoCh16G002470Cucurbita moschata (Rifu)cmocmoB286
CmoCh16G002470Cucumber (Gy14) v1cgycmoB0189
CmoCh16G002470Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G002470Cucurbita maxima (Rimu)cmacmoB701
CmoCh16G002470Wild cucumber (PI 183967)cmocpiB328
CmoCh16G002470Wild cucumber (PI 183967)cmocpiB341
CmoCh16G002470Cucumber (Chinese Long) v2cmocuB333
CmoCh16G002470Melon (DHL92) v3.5.1cmomeB299
CmoCh16G002470Watermelon (Charleston Gray)cmowcgB287
CmoCh16G002470Watermelon (97103) v1cmowmB307
CmoCh16G002470Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G002470Cucurbita pepo (Zucchini)cmocpeB311
CmoCh16G002470Cucurbita pepo (Zucchini)cmocpeB325
CmoCh16G002470Bottle gourd (USVL1VR-Ls)cmolsiB289