CmoCh16G001980 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G001980
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPectinesterase (3.1.1.11)
LocationCmo_Chr16 : 874726 .. 877509 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGAAAAGGCTTGCTTTGGCTGATTGCTTGAAGCTCTACCGAAACACCATCCTTCAGCTCAACAACGCTCTAGATTCATCTACTAAATGTACTTTGTTTGATATCCAAGCCTGGCTCAGTACTGCCCTAACAAACCTTGAAACATGCCGCACAGGGCTTGCTGAGCTTAATGTTTCGGATTATGTATTGCCGCTGATCACATCGAACAATGTCACAAAGCTGATAAGCAACAGCTTGGCTATTAACAATGCTTCAGCTGGCCTGGGGAAGGAAACATACTGCAGTCATCAACAAAGTCGGACCTTGAGGTGGCTCAGGACAGGTCGGGTAACCAGAAGATAGTAGGAGAGGCTCTAGAGGAAGCTGCGAAGAGGAACATGAATGGGAGTTTGTTATACAAGTAACAGAGAGGGGGTTACAAGTAATTGAAGTTTTTCGTAAGGCTCTCGAAGTTATTGAGAAATAAGTTTGCACTATGGGAGGCTGTTAGAATTTAGTGCAACTTATTGCTAGTTTGAATTAATCAAGATATTCGTAATCAGTTAATATTTGGAGAATATATTAGTTATGAAATATATCTTAGATATTCGTAATCAGTTAATATTTTTCCTTTATGATTTGATTAGTAACATATTTTATTTTATTCTCAAGATTTAGTTAGTTTATATTTTCCTTTTTGTAGGTATTAATGGGTAGCTTGTATCATATTTAAAGGGTGTGAATATCAATGAAGATTGAGCCTTCGATCCCAATTCTATTTCTCATTCTTAACTCTGTATTCAGTTAATATTTTTCCTTTATGATTTGATATTCACAACGTTTAAATAGGATAGAAGCTACCCACTAATACCTACAAATAAGGAAAATATAAACTAACTAAATCTTGAGAATAAAATAAAATATACTACTAATCAAATCATAAAAAGAAAAATACTAACTGATTACGAATATGTAAGATATATTCCGTTGTGAATATCAACGAAGATTGTACCTTCGATCCCAATTCTATTTCTCATTCTTAACTCTGTATTCAGTTAATATTTTTCCTTTATGATTTGATATTCACAACGTTTAAATAGGATAGAAGCTACCCACTAATACCTACAAATAAGGAAAATATAAACTAACTAAATCTTGAGAATAAAATAAAATATACTACTAATCAAATCATAAAAAGAAAAATACTAACTGATTACGAATATGTAAGATATATTCCGTTGTGAATATCAACGAAGATTGTACCTTCGATCCCAATTCTATTTCTCATTCTTAACTCTGTATTCAGTTAATATTTTTCCTTTATGATTTGATATTCACAACGTTTAAATAGGATAGAAGCTACCCACTAATACCTACAAATAAGAAAAAATGATTTGATATTCACAACGTTTAAATAGGATAGAAGCTACCCACTAATACCTACAAATAAGAAAAATATAAACTAACTAAATCTTGAGAATAAAATAAAATATACTACTAATCAAATCATAAAAAGAAAAATACTAACTGATTACGAATATGTAAGATATATTCCATAACTAATATATTTTTCAAATATTGACAGATTACGAATATCTTGACTAATTCAAACTAGCAAAAAGTTGCACTAAATCCGGACAGAACCAAGATAAATGGAATGAGATTTACCTTCATTACTGGTAACATAGGAGGAGGTTCCACCCCTTTCAATTCTGCTACTGTTGGTAAGACTCTCTCTGGGTTGACTACTGCTTATAAGCTCATTTTCCTCCATTATAATGACATTATAACATGTCGACCTACATATTTTTCTCGTTCCAAGTCCATCAACTCTACCTGGCAACTTTATCGTCTAGAATTACTTTTCTTCCATTCCAAGGCATGGTGCTTGAAATTTTCTCCTTTTCTCCTTTCCTTCATTTCCAATGAGAATAGAATTATTAGTGGCAGCCATCTTTGTCAATATCAATATAAAAATAGCAAAAACAAAATTTATCGAATTTCATCATAAATGCATCATCGTATACATCGTATGGCTGTCAAGTTTCAATCAGTAATATACATTGTCACTTTCTTTTATAGATTCCAAAAATGGCAATATGAAATCACATTTACCACTTTCATACAAAAAAACTCGAAAATTTGGTTATTTTTCAAAAAGCCGAAAATGTGAAGAGTATATGTTTAACGAGAGATACTTGTACTCTGAGACAATCAGCGGTGACAGGTGAAGGATTTATAGCCCGAGGCATCACATTCCGGAACACCACTGGTCCTGGAAACCATCAAGCAATTGCTCTCCGATCTGGCGCAGATCTTTCTGTCTTCTACCGTTGTGCCTTTCAAGGGTATCAAGAAACCCTTCATGTCCATTTTCGAAGACAGCTCTATAAGTAGTGTTATATTTACGGCACTGTAGATTTTATATTTGGCAATGCTGCAGTTATTCTACAGAACTGCATGATTTAACAAAAAGGTCAATGAATGGTCAGAATACTGGCATTTCAATCCACAATTCAAGGGTCATGGCCACAGATGTACCAAAACAAATGGAGAAGACAGTGAAAACCTACTTGGGAAGGCCGTGGAAGGAGTAATCTCGAACAGTTTTCCACAAAGCTTACCTCCTTGTTCATCAACTAGCCAGAGAATGACTGGAAAGGTTACCGTGTTACAAGCAATTCAATGGAGGTATCGCCTTTCACCGTCAAAAATTTCATTTGCAAGGCAGTTATTGTTGCCAGACAGAGGTCCCATTCACTCCGCTTGGAGAATAGGTTTTCTACATTCTTCCTCTGA

mRNA sequence

ATGGGAAGGAAAAGGCTTGCTTTGGCTGATTGCTTGAAGCTCTACCGAAACACCATCCTTCAGCTCAACAACGCTCTAGATTCATCTACTAAATGTACTTTGTTTGATATCCAAGCCTGGCTCAGTACTGCCCTAACAAACCTTGAAACATGCCGCACAGGGCTTGCTGAGCTTAATGTTTCGGATTATGTATTGCCGCTGATCACATCGAACAATGTCACAAAGCTGATAAGCAACAGCTTGGCTATTAACAATGCTTCAGCTGGCCTGGGGAAGGAAACATACTGCAGTCATCAACAAAGTCGGACCTTGAGGTGGCTCAGGACAGGTGAAGGATTTATAGCCCGAGGCATCACATTCCGGAACACCACTGGTCCTGGAAACCATCAAGCAATTGCTCTCCGATCTGGCGCAGATCTTTCTGTCTTCTACCGTTGTGCCTTTCAAGGTTATTCTACAGAACTGCATGATTTAACAAAAAGGTCAATGAATGGTCAGAATACTGGCATTTCAATCCACAATTCAAGGGTCATGGCCACAGATCCAGAGAATGACTGGAAAGGTTACCGTGTTACAAGCAATTCAATGGAGGTATCGCCTTTCACCGTCAAAAATTTCATTTGCAAGGCAGTTATTGTTGCCAGACAGAGGTCCCATTCACTCCGCTTGGAGAATAGGTTTTCTACATTCTTCCTCTGA

Coding sequence (CDS)

ATGGGAAGGAAAAGGCTTGCTTTGGCTGATTGCTTGAAGCTCTACCGAAACACCATCCTTCAGCTCAACAACGCTCTAGATTCATCTACTAAATGTACTTTGTTTGATATCCAAGCCTGGCTCAGTACTGCCCTAACAAACCTTGAAACATGCCGCACAGGGCTTGCTGAGCTTAATGTTTCGGATTATGTATTGCCGCTGATCACATCGAACAATGTCACAAAGCTGATAAGCAACAGCTTGGCTATTAACAATGCTTCAGCTGGCCTGGGGAAGGAAACATACTGCAGTCATCAACAAAGTCGGACCTTGAGGTGGCTCAGGACAGGTGAAGGATTTATAGCCCGAGGCATCACATTCCGGAACACCACTGGTCCTGGAAACCATCAAGCAATTGCTCTCCGATCTGGCGCAGATCTTTCTGTCTTCTACCGTTGTGCCTTTCAAGGTTATTCTACAGAACTGCATGATTTAACAAAAAGGTCAATGAATGGTCAGAATACTGGCATTTCAATCCACAATTCAAGGGTCATGGCCACAGATCCAGAGAATGACTGGAAAGGTTACCGTGTTACAAGCAATTCAATGGAGGTATCGCCTTTCACCGTCAAAAATTTCATTTGCAAGGCAGTTATTGTTGCCAGACAGAGGTCCCATTCACTCCGCTTGGAGAATAGGTTTTCTACATTCTTCCTCTGA
Homology
[Close]
BLAST of CmoCh16G001980 vs. Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 3.6e-19
Identity = 64/177 (36.16%), Postives = 97/177 (54.80%), Query Frame = 1 

Query: 3   RKRLALADCLKLYRNTILQLNNALDSSTKCTLFDIQAWLSTALTNLETCRTGLAELNVSD 62
           R++ A  DC+KLY  T+ ++N  +D + KC+  D Q WLSTALTNL+TCR G  EL V+D
Sbjct: 92  REKAAWEDCIKLYDLTVSKINETMDPNVKCSKLDAQTWLSTALTNLDTCRAGFLELGVTD 151

Query: 63  YVLPLITSNNVTKLISNSLAINNASAGLGKETYCSHQQSRTLRWLRTGEGFIARGITFRN 122
            VLPL+ SNNV+ L+ N+LAIN          Y   ++     W++ G+  + +  T ++
Sbjct: 152 IVLPLM-SNNVSNLLCNTLAINKVPF-----NYTPPEKDGFPSWVKPGDRKLLQSSTPKD 211

Query: 123 TT-----GPGN----HQAIALRSGADLSVFYRCAFQGYSTELHDLTKRSMNGQNTGI 171
                  G GN     +AI   SG+   V Y    QG  +E  ++ K+++  +  GI
Sbjct: 212 NAVVAKDGSGNFKTIKEAIDAASGSGRFVIY--VKQGVYSENLEIRKKNVMLRGDGI 260

[Close]
BLAST of CmoCh16G001980 vs. Swiss-Prot
Match: PME60_ARATH (Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=PME60 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.0e-18
Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = 1 

Query: 3   RKRLALADCLKLYRNTILQLNNALD-----SSTKCTLFDIQAWLSTALTNLETCRTGLAE 62
           +K+  LADC+ LY +T++QLN  L      +  +CT FD Q WLSTALTN ETCR G ++
Sbjct: 100 KKQAVLADCINLYGDTVMQLNRTLQGVSSKTGRRCTDFDAQTWLSTALTNTETCRRGSSD 159

Query: 63  LNVSDYVLPLITSNNVTKLISNSLAINNASAGLGK 93
           LNVSD+  P++++  ++ LISN LA+N A    GK
Sbjct: 160 LNVSDFTTPIVSNTKISHLISNCLAVNGALLTAGK 194

[Close]
BLAST of CmoCh16G001980 vs. Swiss-Prot
Match: PME59_ARATH (Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.0e-18
Identity = 49/123 (39.84%), Postives = 73/123 (59.35%), Query Frame = 1 

Query: 3   RKRLALADCLKLYRNTILQLNNALD-------SSTKCTLFDIQAWLSTALTNLETCRTGL 62
           +K+  LADC+ LY +TI+QLN  L        ++  CT FD Q WLSTALTN ETCR G 
Sbjct: 96  KKQAVLADCIDLYGDTIMQLNRTLHGVSPKAGAAKSCTDFDAQTWLSTALTNTETCRRGS 155

Query: 63  AELNVSDYVLPLITSNNVTKLISNSLAINNASAGLGKETYCSHQQSRTLRWLRTGEGFIA 119
           ++LNV+D++ P++++  ++ LISN LA+N A    G +   +  Q     WL   +  + 
Sbjct: 156 SDLNVTDFITPIVSNTKISHLISNCLAVNGALLTAGNKGNTTANQKGFPTWLSRKDKRLL 215

[Close]
BLAST of CmoCh16G001980 vs. Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.2e-18
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 1 

Query: 3   RKRLALADCLKLYRNTILQLNNALDSSTKCTLFDIQAWLSTALTNLETCRTGLAELNVSD 62
           R++ A  DC +LY  T+L+LN   +SS  CT  D Q WLSTALTNLETCR  L +L V +
Sbjct: 90  REKAAWEDCRELYELTVLKLNQTSNSSPGCTKVDKQTWLSTALTNLETCRASLEDLGVPE 149

Query: 63  YVLPLITSNNVTKLISNSLAIN 85
           YVLPL+ SNNVTKLISN+L++N
Sbjct: 150 YVLPLL-SNNVTKLISNTLSLN 170

[Close]
BLAST of CmoCh16G001980 vs. Swiss-Prot
Match: PME33_ARATH (Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=PME33 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.4e-17
Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 1 

Query: 3   RKRLALADCLKLYRNTILQLNNAL-------DSSTKCTLFDIQAWLSTALTNLETCRTGL 62
           +++ A +DC+ L++NT+ QLN  L        S  KCT FD Q WLSTA TN+ETCR+G 
Sbjct: 150 QRKAAWSDCVNLFQNTVAQLNRTLKGLNPAASSDVKCTDFDAQTWLSTAQTNIETCRSGS 209

Query: 63  AELNVSDYVLPLITSNNVTKLISNSLAIN 85
            +LNVSD+V+P+I++ N++ LI N LA+N
Sbjct: 210 EDLNVSDFVMPVISNKNLSDLIGNCLAVN 238

[Close]
BLAST of CmoCh16G001980 vs. TrEMBL
Match: A0A0A0L9G4_CUCSA (Pectinesterase OS=Cucumis sativus GN=Csa_3G175720 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.6e-32
Identity = 77/96 (80.21%), Postives = 85/96 (88.54%), Query Frame = 1 

Query: 2   GRKRLALADCLKLYRNTILQLNNALDSSTKCTLFDIQAWLSTALTNLETCRTGLAELNVS 61
           G+++ A ADCLKLY+NTILQLN  LDSSTK T FDIQ WLSTALTNLETCRTG AELNVS
Sbjct: 140 GKEKAAWADCLKLYQNTILQLNQTLDSSTKSTEFDIQTWLSTALTNLETCRTGFAELNVS 199

Query: 62  DYVLPLITSNNVTKLISNSLAINNASAGL--GKETY 96
           DY+LPLI S+NVT+LISNSLAINNASAG+  GKETY
Sbjct: 200 DYILPLIMSDNVTELISNSLAINNASAGVGNGKETY 235

[Close]
BLAST of CmoCh16G001980 vs. TrEMBL
Match: A0A0B2QX11_GLYSO (Pectinesterase OS=Glycine soja GN=glysoja_039591 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.9e-30
Identity = 78/183 (42.62%), Postives = 112/183 (61.20%), Query Frame = 1 

Query: 3   RKRLALADCLKLYRNTILQLNNALDSSTKCTLFDIQAWLSTALTNLETCRTGLAELNVSD 62
           +++ A +DC+ LY++TI  LN AL+ + + T +D+Q WL+T+LTN  TC+TG  ++ V +
Sbjct: 22  QEKAAWSDCVTLYQDTINILNQALNPTKQSTSYDLQTWLTTSLTNTNTCQTGFHKVGVGN 81

Query: 63  YVLPLITSNNVTKLISNSLAINNASA------------------------GLGKETYCSH 122
            VLPLI + N++K+IS+ L +NNAS+                        G G  T+ S 
Sbjct: 82  NVLPLIPNKNISKIISDFLTLNNASSFIPPKTNKNGFPRWLTVISGSRSVGGGSTTFNST 141

Query: 123 QQSRTLRWLRTGEGFIARGITFRNTTGPGNHQAIALRSGADLSVFYRCAFQGYSTELHDL 162
                + +    +GFIARGITFRNT GP NHQA  LR GADLSVF+RCAF+GY   L+  
Sbjct: 142 NVGLNIVYSCDKDGFIARGITFRNTEGPENHQAGGLRCGADLSVFHRCAFEGYQDTLYVH 201

[Close]
BLAST of CmoCh16G001980 vs. TrEMBL
Match: A0A061G787_THECC (Pectinesterase OS=Theobroma cacao GN=TCM_014942 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-24
Identity = 77/154 (50.00%), Postives = 97/154 (62.99%), Query Frame = 1 

Query: 3   RKRLALADCLKLYRNTILQLNNALDSSTKCTLFDIQAWLSTALTNLETCRTGLAELNVSD 62
           +++ A ADCLKLY  TILQLN  LDS TKCT FD+Q WLSTALTNLETCR G  EL VSD
Sbjct: 91  KEKAAWADCLKLYEETILQLNQTLDS-TKCTDFDVQTWLSTALTNLETCRAGFVELGVSD 150

Query: 63  YVLPLITSNNVTKLISNSLAINNASAGLGKETYCSHQQSRTLRWLRTGEGFIARGIT--- 122
           Y+LPL+ SNNV+KLISN+LA+NN +A    +TY    +    RWL+ G+  + +  +   
Sbjct: 151 YILPLM-SNNVSKLISNTLALNN-NASFVPQTY----KHGFPRWLKAGDRKLLQSSSPTP 210

Query: 123 --FRNTTGPGNHQAI-------ALRSGADLSVFY 145
                  G GNH+ I       A RSG+   V +
Sbjct: 211 NLVVAQDGSGNHRTIKEALDAAAKRSGSGRFVIH 237

[Close]
BLAST of CmoCh16G001980 vs. TrEMBL
Match: A0A067FQH6_CITSI (Pectinesterase OS=Citrus sinensis GN=CISIN_1g010103mg PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.8e-24
Identity = 72/135 (53.33%), Postives = 90/135 (66.67%), Query Frame = 1 

Query: 3   RKRLALADCLKLYRNTILQLNNALDSSTKCTLFDIQAWLSTALTNLETCRTGLAELNVSD 62
           ++++A ADCLKLY++TI QLN+ LDS+TKCT FD Q WLSTALTNLETCR G  EL V D
Sbjct: 93  KEKVAWADCLKLYQDTINQLNHTLDSNTKCTDFDAQTWLSTALTNLETCRAGFVELGVPD 152

Query: 63  YVLPLITSNNVTKLISNSLAINNASAGLGKETYCSHQQSRTLRWLRTGEGFIARGITFRN 122
           YVLPL+ SNNVTKLISN+LA+ NAS     ETY     S    W++ G+  + +    R 
Sbjct: 153 YVLPLM-SNNVTKLISNTLALRNAST--VPETYKGGFPS----WVKPGDRKLLQTSPVRP 212

Query: 123 T-----TGPGNHQAI 133
                  G GN++ I
Sbjct: 213 NLVVAQDGSGNYRTI 220

[Close]
BLAST of CmoCh16G001980 vs. TrEMBL
Match: V4S7X2_9ROSI (Pectinesterase OS=Citrus clementina GN=CICLE_v10004742mg PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.8e-24
Identity = 72/135 (53.33%), Postives = 90/135 (66.67%), Query Frame = 1 

Query: 3   RKRLALADCLKLYRNTILQLNNALDSSTKCTLFDIQAWLSTALTNLETCRTGLAELNVSD 62
           ++++A ADCLKLY++TI QLN+ LDS+TKCT FD Q WLSTALTNLETCR G  EL V D
Sbjct: 93  KEKVAWADCLKLYQDTINQLNHTLDSNTKCTDFDAQTWLSTALTNLETCRAGFVELGVPD 152

Query: 63  YVLPLITSNNVTKLISNSLAINNASAGLGKETYCSHQQSRTLRWLRTGEGFIARGITFRN 122
           YVLPL+ SNNVTKLISN+LA+ NAS     ETY     S    W++ G+  + +    R 
Sbjct: 153 YVLPLM-SNNVTKLISNTLALRNAST--VPETYKGGFPS----WVKPGDRKLLQTSPVRP 212

Query: 123 T-----TGPGNHQAI 133
                  G GN++ I
Sbjct: 213 NLVVAQDGSGNYRTI 220

[Close]
BLAST of CmoCh16G001980 vs. TAIR10
Match: AT2G45220.1 (AT2G45220.1 Plant invertase/pectin methylesterase inhibitor superfamily)

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-20
Identity = 64/177 (36.16%), Postives = 97/177 (54.80%), Query Frame = 1 

Query: 3   RKRLALADCLKLYRNTILQLNNALDSSTKCTLFDIQAWLSTALTNLETCRTGLAELNVSD 62
           R++ A  DC+KLY  T+ ++N  +D + KC+  D Q WLSTALTNL+TCR G  EL V+D
Sbjct: 92  REKAAWEDCIKLYDLTVSKINETMDPNVKCSKLDAQTWLSTALTNLDTCRAGFLELGVTD 151

Query: 63  YVLPLITSNNVTKLISNSLAINNASAGLGKETYCSHQQSRTLRWLRTGEGFIARGITFRN 122
            VLPL+ SNNV+ L+ N+LAIN          Y   ++     W++ G+  + +  T ++
Sbjct: 152 IVLPLM-SNNVSNLLCNTLAINKVPF-----NYTPPEKDGFPSWVKPGDRKLLQSSTPKD 211

Query: 123 TT-----GPGN----HQAIALRSGADLSVFYRCAFQGYSTELHDLTKRSMNGQNTGI 171
                  G GN     +AI   SG+   V Y    QG  +E  ++ K+++  +  GI
Sbjct: 212 NAVVAKDGSGNFKTIKEAIDAASGSGRFVIY--VKQGVYSENLEIRKKNVMLRGDGI 260

[Close]
BLAST of CmoCh16G001980 vs. TAIR10
Match: AT5G51500.1 (AT5G51500.1 Plant invertase/pectin methylesterase inhibitor superfamily)

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-19
Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = 1 

Query: 3   RKRLALADCLKLYRNTILQLNNALD-----SSTKCTLFDIQAWLSTALTNLETCRTGLAE 62
           +K+  LADC+ LY +T++QLN  L      +  +CT FD Q WLSTALTN ETCR G ++
Sbjct: 100 KKQAVLADCINLYGDTVMQLNRTLQGVSSKTGRRCTDFDAQTWLSTALTNTETCRRGSSD 159

Query: 63  LNVSDYVLPLITSNNVTKLISNSLAINNASAGLGK 93
           LNVSD+  P++++  ++ LISN LA+N A    GK
Sbjct: 160 LNVSDFTTPIVSNTKISHLISNCLAVNGALLTAGK 194

[Close]
BLAST of CmoCh16G001980 vs. TAIR10
Match: AT5G51490.1 (AT5G51490.1 Plant invertase/pectin methylesterase inhibitor superfamily)

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-19
Identity = 49/123 (39.84%), Postives = 73/123 (59.35%), Query Frame = 1 

Query: 3   RKRLALADCLKLYRNTILQLNNALD-------SSTKCTLFDIQAWLSTALTNLETCRTGL 62
           +K+  LADC+ LY +TI+QLN  L        ++  CT FD Q WLSTALTN ETCR G 
Sbjct: 96  KKQAVLADCIDLYGDTIMQLNRTLHGVSPKAGAAKSCTDFDAQTWLSTALTNTETCRRGS 155

Query: 63  AELNVSDYVLPLITSNNVTKLISNSLAINNASAGLGKETYCSHQQSRTLRWLRTGEGFIA 119
           ++LNV+D++ P++++  ++ LISN LA+N A    G +   +  Q     WL   +  + 
Sbjct: 156 SDLNVTDFITPIVSNTKISHLISNCLAVNGALLTAGNKGNTTANQKGFPTWLSRKDKRLL 215

[Close]
BLAST of CmoCh16G001980 vs. TAIR10
Match: AT3G47400.1 (AT3G47400.1 Plant invertase/pectin methylesterase inhibitor superfamily)

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-18
Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 1 

Query: 3   RKRLALADCLKLYRNTILQLNNAL-------DSSTKCTLFDIQAWLSTALTNLETCRTGL 62
           +++ A +DC+ L++NT+ QLN  L        S  KCT FD Q WLSTA TN+ETCR+G 
Sbjct: 150 QRKAAWSDCVNLFQNTVAQLNRTLKGLNPAASSDVKCTDFDAQTWLSTAQTNIETCRSGS 209

Query: 63  AELNVSDYVLPLITSNNVTKLISNSLAIN 85
            +LNVSD+V+P+I++ N++ LI N LA+N
Sbjct: 210 EDLNVSDFVMPVISNKNLSDLIGNCLAVN 238

[Close]
BLAST of CmoCh16G001980 vs. TAIR10
Match: AT4G00190.1 (AT4G00190.1 pectin methylesterase 38)

HSP 1 Score: 78.2 bits (191), Expect = 7.5e-15
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 1 

Query: 62  DYVLPLITSNNVTKL---ISNSLAINNASAGLGKETYCSHQQSRTLRWLRTGEGFIARGI 121
           +YV   I SNN+      I  ++   + S G G  TY      ++  ++  G+GF+ R I
Sbjct: 206 EYVNVGIKSNNIMITGDGIGKTIITGDKSKGRGFSTY------KSATFVAEGDGFVGRDI 265

Query: 122 TFRNTTGPGNHQAIALRSGADLSVFYRCAFQGYSTELHDLTKRSMNGQ------------ 181
           T RNT GP NHQA+ALRS +D+SVFYRC+ +GY   L+  + R    +            
Sbjct: 266 TIRNTAGPENHQAVALRSNSDMSVFYRCSIEGYQDTLYVHSGRQFFRECDIYGTVDFIFG 325

Query: 182 NTGISIHNSRVMATDPEN 185
           N    + N R+ A +P N
Sbjct: 326 NAAAVLQNCRIFARNPPN 337

[Close]
BLAST of CmoCh16G001980 vs. NCBI nr
Match: gi|778679320|ref|XP_004148139.2| (PREDICTED: pectinesterase 2 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 3.7e-32
Identity = 77/96 (80.21%), Postives = 85/96 (88.54%), Query Frame = 1 

Query: 2   GRKRLALADCLKLYRNTILQLNNALDSSTKCTLFDIQAWLSTALTNLETCRTGLAELNVS 61
           G+++ A ADCLKLY+NTILQLN  LDSSTK T FDIQ WLSTALTNLETCRTG AELNVS
Sbjct: 140 GKEKAAWADCLKLYQNTILQLNQTLDSSTKSTEFDIQTWLSTALTNLETCRTGFAELNVS 199

Query: 62  DYVLPLITSNNVTKLISNSLAINNASAGL--GKETY 96
           DY+LPLI S+NVT+LISNSLAINNASAG+  GKETY
Sbjct: 200 DYILPLIMSDNVTELISNSLAINNASAGVGNGKETY 235

[Close]
BLAST of CmoCh16G001980 vs. NCBI nr
Match: gi|734385111|gb|KHN24584.1| (Pectinesterase 2 [Glycine soja])

HSP 1 Score: 141.0 bits (354), Expect = 2.7e-30
Identity = 78/183 (42.62%), Postives = 112/183 (61.20%), Query Frame = 1 

Query: 3   RKRLALADCLKLYRNTILQLNNALDSSTKCTLFDIQAWLSTALTNLETCRTGLAELNVSD 62
           +++ A +DC+ LY++TI  LN AL+ + + T +D+Q WL+T+LTN  TC+TG  ++ V +
Sbjct: 22  QEKAAWSDCVTLYQDTINILNQALNPTKQSTSYDLQTWLTTSLTNTNTCQTGFHKVGVGN 81

Query: 63  YVLPLITSNNVTKLISNSLAINNASA------------------------GLGKETYCSH 122
            VLPLI + N++K+IS+ L +NNAS+                        G G  T+ S 
Sbjct: 82  NVLPLIPNKNISKIISDFLTLNNASSFIPPKTNKNGFPRWLTVISGSRSVGGGSTTFNST 141

Query: 123 QQSRTLRWLRTGEGFIARGITFRNTTGPGNHQAIALRSGADLSVFYRCAFQGYSTELHDL 162
                + +    +GFIARGITFRNT GP NHQA  LR GADLSVF+RCAF+GY   L+  
Sbjct: 142 NVGLNIVYSCDKDGFIARGITFRNTEGPENHQAGGLRCGADLSVFHRCAFEGYQDTLYVH 201

[Close]
BLAST of CmoCh16G001980 vs. NCBI nr
Match: gi|659077230|ref|XP_008439095.1| (PREDICTED: pectinesterase-like [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 1.0e-29
Identity = 75/96 (78.12%), Postives = 81/96 (84.38%), Query Frame = 1 

Query: 2   GRKRLALADCLKLYRNTILQLNNALDSSTKCTLFDIQAWLSTALTNLETCRTGLAELNVS 61
           G+++ A ADCLKLY+NTILQLN  LDSSTK T FDIQ WLSTALTNLETCRTG AELNV 
Sbjct: 140 GKEKAAWADCLKLYQNTILQLNQTLDSSTKRTEFDIQTWLSTALTNLETCRTGFAELNVL 199

Query: 62  DYVLPLITSNNVTKLISNSLAINNASA--GLGKETY 96
           DY+ PLI S+NVTKLISNSLAINNASA  G GK TY
Sbjct: 200 DYIWPLIMSDNVTKLISNSLAINNASAAVGNGKVTY 235

[Close]
BLAST of CmoCh16G001980 vs. NCBI nr
Match: gi|590671731|ref|XP_007038413.1| (Pectinesterase [Theobroma cacao])

HSP 1 Score: 120.9 bits (302), Expect = 2.9e-24
Identity = 77/154 (50.00%), Postives = 97/154 (62.99%), Query Frame = 1 

Query: 3   RKRLALADCLKLYRNTILQLNNALDSSTKCTLFDIQAWLSTALTNLETCRTGLAELNVSD 62
           +++ A ADCLKLY  TILQLN  LDS TKCT FD+Q WLSTALTNLETCR G  EL VSD
Sbjct: 91  KEKAAWADCLKLYEETILQLNQTLDS-TKCTDFDVQTWLSTALTNLETCRAGFVELGVSD 150

Query: 63  YVLPLITSNNVTKLISNSLAINNASAGLGKETYCSHQQSRTLRWLRTGEGFIARGIT--- 122
           Y+LPL+ SNNV+KLISN+LA+NN +A    +TY    +    RWL+ G+  + +  +   
Sbjct: 151 YILPLM-SNNVSKLISNTLALNN-NASFVPQTY----KHGFPRWLKAGDRKLLQSSSPTP 210

Query: 123 --FRNTTGPGNHQAI-------ALRSGADLSVFY 145
                  G GNH+ I       A RSG+   V +
Sbjct: 211 NLVVAQDGSGNHRTIKEALDAAAKRSGSGRFVIH 237

[Close]
BLAST of CmoCh16G001980 vs. NCBI nr
Match: gi|641846563|gb|KDO65446.1| (hypothetical protein CISIN_1g010103mg [Citrus sinensis])

HSP 1 Score: 119.4 bits (298), Expect = 8.3e-24
Identity = 72/135 (53.33%), Postives = 90/135 (66.67%), Query Frame = 1 

Query: 3   RKRLALADCLKLYRNTILQLNNALDSSTKCTLFDIQAWLSTALTNLETCRTGLAELNVSD 62
           ++++A ADCLKLY++TI QLN+ LDS+TKCT FD Q WLSTALTNLETCR G  EL V D
Sbjct: 93  KEKVAWADCLKLYQDTINQLNHTLDSNTKCTDFDAQTWLSTALTNLETCRAGFVELGVPD 152

Query: 63  YVLPLITSNNVTKLISNSLAINNASAGLGKETYCSHQQSRTLRWLRTGEGFIARGITFRN 122
           YVLPL+ SNNVTKLISN+LA+ NAS     ETY     S    W++ G+  + +    R 
Sbjct: 153 YVLPLM-SNNVTKLISNTLALRNAST--VPETYKGGFPS----WVKPGDRKLLQTSPVRP 212

Query: 123 T-----TGPGNHQAI 133
                  G GN++ I
Sbjct: 213 NLVVAQDGSGNYRTI 220

The following BLAST results are available for this feature:
BLAST of CmoCh16G001980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PME17_ARATH3.6e-1936.16Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=P... [more]
PME60_ARATH4.0e-1848.42Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=P... [more]
PME59_ARATH4.0e-1839.84Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=P... [more]
PME2_CITSI5.2e-1859.76Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1[more]
PME33_ARATH3.4e-1749.44Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=P... [more]
BLAST of CmoCh16G001980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9G4_CUCSA2.6e-3280.21Pectinesterase OS=Cucumis sativus GN=Csa_3G175720 PE=4 SV=1[more]
A0A0B2QX11_GLYSO1.9e-3042.62Pectinesterase OS=Glycine soja GN=glysoja_039591 PE=4 SV=1[more]
A0A061G787_THECC2.0e-2450.00Pectinesterase OS=Theobroma cacao GN=TCM_014942 PE=4 SV=1[more]
A0A067FQH6_CITSI5.8e-2453.33Pectinesterase OS=Citrus sinensis GN=CISIN_1g010103mg PE=4 SV=1[more]
V4S7X2_9ROSI5.8e-2453.33Pectinesterase OS=Citrus clementina GN=CICLE_v10004742mg PE=4 SV=1[more]
BLAST of CmoCh16G001980 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G45220.12.0e-2036.16 Plant invertase/pectin methylesterase inhibitor superfamily[more]
AT5G51500.12.3e-1948.42 Plant invertase/pectin methylesterase inhibitor superfamily[more]
AT5G51490.12.3e-1939.84 Plant invertase/pectin methylesterase inhibitor superfamily[more]
AT3G47400.11.9e-1849.44 Plant invertase/pectin methylesterase inhibitor superfamily[more]
AT4G00190.17.5e-1534.78 pectin methylesterase 38[more]
BLAST of CmoCh16G001980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778679320|ref|XP_004148139.2|3.7e-3280.21PREDICTED: pectinesterase 2 [Cucumis sativus][more]
gi|734385111|gb|KHN24584.1|2.7e-3042.62Pectinesterase 2 [Glycine soja][more]
gi|659077230|ref|XP_008439095.1|1.0e-2978.13PREDICTED: pectinesterase-like [Cucumis melo][more]
gi|590671731|ref|XP_007038413.1|2.9e-2450.00Pectinesterase [Theobroma cacao][more]
gi|641846563|gb|KDO65446.1|8.3e-2453.33hypothetical protein CISIN_1g010103mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000070Pectinesterase_cat
IPR006501Pectinesterase_inhib_dom
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
Vocabulary: Cellular Component
TermDefinition
GO:0005618cell wall
Vocabulary: Molecular Function
TermDefinition
GO:0030599pectinesterase activity
GO:0004857enzyme inhibitor activity
Vocabulary: Biological Process
TermDefinition
GO:0042545cell wall modification
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042545 cell wall modification
biological_process GO:0043086 negative regulation of catalytic activity
biological_process GO:0045490 pectin catabolic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005618 cell wall
cellular_component GO:0005576 extracellular region
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0045330 aspartyl esterase activity
molecular_function GO:0004857 enzyme inhibitor activity
molecular_function GO:0030599 pectinesterase activity
molecular_function GO:0046910 pectinesterase inhibitor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G001980.1CmoCh16G001980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000070Pectinesterase, catalyticPFAMPF01095Pectinesterasecoord: 107..161
score: 2.1
IPR006501Pectinesterase inhibitor domainGENE3DG3DSA:1.20.140.40coord: 3..85
score: 7.6
IPR006501Pectinesterase inhibitor domainPFAMPF04043PMEIcoord: 5..83
score: 3.9
IPR006501Pectinesterase inhibitor domainTIGRFAMsTIGR01614TIGR01614coord: 4..85
score: 5.7
IPR006501Pectinesterase inhibitor domainunknownSSF101148Plant invertase/pectin methylesterase inhibitorcoord: 4..85
score: 4.32
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 101..208
score: 9.03
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 101..153
score: 2.7
NoneNo IPR availablePANTHERPTHR31707FAMILY NOT NAMEDcoord: 3..151
score: 5.6
NoneNo IPR availablePANTHERPTHR31707:SF11PECTINESTERASE/PECTINESTERASE INHIBITOR 17-RELATEDcoord: 3..151
score: 5.6