CmoCh16G001960 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G001960
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr16 : 868830 .. 869346 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCTCTGCAATCCGGTTGATCAAAGACAGAGCATTACTGGTCAACTGCGCAATGTTCACAATCCTCCTCCTAACCGCCGCCTTAACGCCGCCCTTGACAGCCTTCCCTTGAAACCCCTCACTACAAGTGGTCTCATCAGTGAGGGCGGCGCTGACCCATGTCTGAACATCGCTCATAACGAGATCAAAGTCATGGCCACGTAGCTTGGGCATCTCGGAAATGGAGCTGGCAAGGGAGTCAACAGAGTCACTGAGCTCTTCCAAACAGTCGTTAAGAGCAGAGACGTCTCTTGGAGGGAGGCCGTGGGCGTGGGAGAGCTTGAGGATTTGGGTGGCGGCGGACTTGACGGAGGAGAGGGTGACAGAGAGGGCGGTGGTGGCCAAAAGGCGAGGGCTTGTTTGGATGGAATTGGCGTGGATTGAAAGAGATGAGAAACAGAGTCGAGGGTATTTAGTGGAAGTGCAAGAAGTTCTTATGAACTGTGTGCTGCTTTGTGGAGTGATGGCTGAATGA

mRNA sequence

ATGCAGCTCTGCAATCCGGTTGATCAAAGACAGAGCATTACTGGTCAACTGCGCAATGTTCACAATCCTCCTCCTAACCGCCGCCTTAACGCCGCCCTTGACAGCCTTCCCTTGAAACCCCTCACTACAAGTGGTCTCATCAGTGAGGGCGGCGCTGACCCATGTCTGAACATCGCTCATAACGAGATCAAAGTCATGGCCACCTTGGGCATCTCGGAAATGGAGCTGGCAAGGGAGTCAACAGAGTCACTGAGCTCTTCCAAACAGTCGTTAAGAGCAGAGACGTCTCTTGGAGGGAGGCCGTGGGCGTGGGAGAGCTTGAGGATTTGGGTGGCGGCGGACTTGACGGAGGAGAGGGTGACAGAGAGGGCGGTGGTGGCCAAAAGGCGAGGGCTTGTTTGGATGGAATTGGCGTGGATTGAAAGAGATGAGAAACAGAGTCGAGGGTATTTAGTGGAAGTGCAAGAAGTTCTTATGAACTGTGTGCTGCTTTGTGGAGTGATGGCTGAATGA

Coding sequence (CDS)

ATGCAGCTCTGCAATCCGGTTGATCAAAGACAGAGCATTACTGGTCAACTGCGCAATGTTCACAATCCTCCTCCTAACCGCCGCCTTAACGCCGCCCTTGACAGCCTTCCCTTGAAACCCCTCACTACAAGTGGTCTCATCAGTGAGGGCGGCGCTGACCCATGTCTGAACATCGCTCATAACGAGATCAAAGTCATGGCCACCTTGGGCATCTCGGAAATGGAGCTGGCAAGGGAGTCAACAGAGTCACTGAGCTCTTCCAAACAGTCGTTAAGAGCAGAGACGTCTCTTGGAGGGAGGCCGTGGGCGTGGGAGAGCTTGAGGATTTGGGTGGCGGCGGACTTGACGGAGGAGAGGGTGACAGAGAGGGCGGTGGTGGCCAAAAGGCGAGGGCTTGTTTGGATGGAATTGGCGTGGATTGAAAGAGATGAGAAACAGAGTCGAGGGTATTTAGTGGAAGTGCAAGAAGTTCTTATGAACTGTGTGCTGCTTTGTGGAGTGATGGCTGAATGA
Homology
[Close]
BLAST of CmoCh16G001960 vs. TrEMBL
Match: A0A0A0L5L7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175990 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 1 

Query: 1  MQLCNPVDQRQSITGQLRNVHNPPPNRRLNAALDSLPLKPLTTSGLISEGGADPCLNIAH 60
          MQ+ N ++QRQS+T QLRNV N  PNR LNA++  LPLKP  T G I + GA+PCLNI H
Sbjct: 1  MQITNSINQRQSVTSQLRNVDNLSPNRTLNASVHRLPLKPFATCGFIRQSGANPCLNITH 60

Query: 61 NEIKVMAT 69
           E+++ AT
Sbjct: 61 CEVEIGAT 68

[Close]
BLAST of CmoCh16G001960 vs. TrEMBL
Match: A0A0A0L9G9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176240 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-13
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 1 

Query: 1  MQLCNPVDQRQSITGQLRNVHNPPPNRRLNAALDSLPLKPLTTSGLISEGGADPCLNIAH 60
          MQ+  P++QRQSIT QLRNV N  PNR LNA++  LPLKP  T G I + GA+PCLNI H
Sbjct: 1  MQISYPINQRQSITSQLRNVDNLSPNRTLNASVHRLPLKPFATCGFIRQSGANPCLNITH 60

Query: 61 NEIKVMAT 69
           E+++ +T
Sbjct: 61 CEVEIGST 68

[Close]
BLAST of CmoCh16G001960 vs. NCBI nr
Match: gi|700202142|gb|KGN57275.1| (hypothetical protein Csa_3G175990 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 1 

Query: 1  MQLCNPVDQRQSITGQLRNVHNPPPNRRLNAALDSLPLKPLTTSGLISEGGADPCLNIAH 60
          MQ+ N ++QRQS+T QLRNV N  PNR LNA++  LPLKP  T G I + GA+PCLNI H
Sbjct: 1  MQITNSINQRQSVTSQLRNVDNLSPNRTLNASVHRLPLKPFATCGFIRQSGANPCLNITH 60

Query: 61 NEIKVMAT 69
           E+++ AT
Sbjct: 61 CEVEIGAT 68

[Close]
BLAST of CmoCh16G001960 vs. NCBI nr
Match: gi|700202144|gb|KGN57277.1| (hypothetical protein Csa_3G176240 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 3.7e-13
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 1 

Query: 1  MQLCNPVDQRQSITGQLRNVHNPPPNRRLNAALDSLPLKPLTTSGLISEGGADPCLNIAH 60
          MQ+  P++QRQSIT QLRNV N  PNR LNA++  LPLKP  T G I + GA+PCLNI H
Sbjct: 1  MQISYPINQRQSITSQLRNVDNLSPNRTLNASVHRLPLKPFATCGFIRQSGANPCLNITH 60

Query: 61 NEIKVMAT 69
           E+++ +T
Sbjct: 61 CEVEIGST 68

The following BLAST results are available for this feature:
BLAST of CmoCh16G001960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G001960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5L7_CUCSA1.5e-1357.35Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175990 PE=4 SV=1[more]
A0A0A0L9G9_CUCSA2.6e-1357.35Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176240 PE=4 SV=1[more]
BLAST of CmoCh16G001960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh16G001960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202142|gb|KGN57275.1|2.2e-1357.35hypothetical protein Csa_3G175990 [Cucumis sativus][more]
gi|700202144|gb|KGN57277.1|3.7e-1357.35hypothetical protein Csa_3G176240 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G001960.1CmoCh16G001960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G001960Csa3G176240Cucumber (Chinese Long) v2cmocuB317
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G001960Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G001960Cucurbita pepo (Zucchini)cmocpeB311
CmoCh16G001960Cucurbita pepo (Zucchini)cmocpeB322
CmoCh16G001960Bottle gourd (USVL1VR-Ls)cmolsiB300
CmoCh16G001960Cucumber (Gy14) v2cgybcmoB312
CmoCh16G001960Melon (DHL92) v3.6.1cmomedB331
CmoCh16G001960Silver-seed gourdcarcmoB0509
CmoCh16G001960Silver-seed gourdcarcmoB0966
CmoCh16G001960Silver-seed gourdcarcmoB1175
CmoCh16G001960Cucumber (Chinese Long) v3cmocucB0379
CmoCh16G001960Watermelon (97103) v2cmowmbB331
CmoCh16G001960Wax gourdcmowgoB0436
CmoCh16G001960Cucurbita moschata (Rifu)cmocmoB239
CmoCh16G001960Cucurbita moschata (Rifu)cmocmoB286
CmoCh16G001960Cucumber (Gy14) v1cgycmoB0704
CmoCh16G001960Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G001960Cucurbita maxima (Rimu)cmacmoB701
CmoCh16G001960Wild cucumber (PI 183967)cmocpiB325
CmoCh16G001960Melon (DHL92) v3.5.1cmomeB289
CmoCh16G001960Watermelon (Charleston Gray)cmowcgB290
CmoCh16G001960Watermelon (97103) v1cmowmB310