CmoCh16G001810 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G001810
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionATP-dependent clp protease ATP binding subunit
LocationCmo_Chr16 : 814674 .. 817930 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGTATCAATTCCCTCGGGACCTGATTTCAATCTCCTCCAAAATTGAGCTTTCCTTAGCTTCTAATGGCGGCAACTCGCATGAATTCTCTTTCGCTTTCCCTAGTCCCATGTTCCCTTCCGGCTCAATCTAATTGTTACTCTTTAGAACCCAAAACTCTATTCCTTCCCGTCAGCCCTCTAATCCAGCTCAACCTCGCAATTAAGCGTTCTAATGCCACCCATTCCGTCTCGAAGTTCACTCGCCGTGCCACCACTGCCACTGTATCGTTTAGCCTCCCGGCTTCGTAAGATTTGATTGCCTCTCTTGCTTCACCGACTGATTCCTTTTCAAGTCCTCATAGCTAAAATTTTGTCTTGTATTGCAGGAAACCCGAGGGCGTTTCCCCAGATAAACTCCCCAAGTAAGTTTACCCCCACAAATTTTCCCCCATTCAATTAGAGACGTTCTGAAGCATGCGTCGAGCTTAAGTGGTTTTAATTGGAGTTTTTGTTGCCTGCTTTCATAACGCGTGAATATTATTTTCTAATTTAACTAATCGTTTTGAAATTTAATGTGGGATGATGATTATTCAGGTAGTTTTAAGACATCAATTTTAGTCTTTAATTTCCTGTCTGGAAGCTTTGAAATTAATTTTTGTCTTTGTGCATTTGAAACTATTTGCTGATATGTTAAGCCATAATCTAGCGTGGCCAATGTATGACCTCTTACTCGATGCACATCATTGAATGATTTCATATCTTTCTCTTTTTGGTTGTACGATTTTTTCTCATCAATACAAATTGGTTTTCCAGCATGTCAGCATATCATAGCTGTTGAATCATTTGTTATATGACTTATCCTTTTCCACATTAGATTGTCGATTAATGCAGAAATGATAGTGGTGTTAATTGTTTGTTGAATTTGTTATGTATAAGATGGTCAGCTAGAGCAATAAAGTCATTTGCAATGGCAGAATTGGAAGCAAGGAAACTCAAATATCCAAATACAGGCACAGAAGCTTTGTTAATGGGAATTTTAATCGAGGGTTGGTAGTCGTTCCATCTCTGAGGTCATTTATTTTTTACATTTAAATTTAGACTTGCTTATTGATTTAGTTTAGTTGAATGCAGTTAAATTACGGAACTATATGAATCTTGGTCCCTTCTTTAAGGAAAATAATGCTAAAATCAAGATCATTTCCTGAGGAGTTAGCACATGATGATCACTTTCAAATGTGGCTACTTCCCTTTCCAGCATCATTTCATGATATCTTCCATTGTCATCTGATGTCTCTCATGTGCAACTACGGAACTGTTTTGAAAGACTTAGTTTATGTTAAAGAATTCGACAAGGAAGCTTATGTTCATGTCAGCTCCTGTTCATGTCTGTTAGATGATGAGTATGAGTAACCTATCTTTGACAGTAGCCTTGGGCTACTGGCAGCATGCTTTTTGTATGTCCTTAGGCTTAATAGCTAGTAGTACTCATGGTGAAGTTAATCGATAATTTTCAACCTTGTTCAGAAAAAGGAGATACGATTAAGAAATGATAAACTATAGTTGCATATACCCTTTGGTTGCAATCTTTAATTTTTTCGACATATATTTGTTCATATTCTTTTCAGGAACAAATATTGCTGCCAGATTCTTAAGGGCTAACGGAATTACACTTTTCAAGGTAAGAGAAGAAACTGTCAAGCTACTTGGAAAATCTGACATGTATTTCTTCAGCCCAGAGCATCCTCCATTGACTGAATCTGCTCAGAGGGCACTTGATTGGGCTGTTGCAGAGAAGTTAAAGTCCGGTGAGATCATTCTTCCTTCGTGCAGCCAATTTGATTCTTATTTAGCCTGAAAGCGAGTGATAATACTTGAGTTTTCTACTGAAAGCTCTATGCATGCATTTTAATTGTAAAGAAATCAGATAATTCTTAACAGCTTGATTGGAAAGTAAAGAAATCAGATGACGGGAGGTTAGGCGTGCTTTTATCACAGGCTTCTTAACAGCTTGATTGGAAAGTAATCAGATAATTCTTCCACGGCTAGGATAGTGAATAAATGATTTCCCAATCATGCTTACCACAATAGAAAAGTGAATAAATGCTTTTAGAATTATGCTTAATGCAACTAGCTACCGTATGTTAGTCTAGTGGTCAAAAGGGTTATGTAAGTAATCAAGGGCTTAGATAGAGTGAGTAGTTCAAGTATGGTGGTCATTGTTCGAGTCAAAATCAAATGTAGCAGGGTAAAACAATTGTCTCATGTGAATAATTGAGAATAGTCAAGGTACGCGCAAACAGGTTTGGACACACCAATATTAAAAAAAAAAAAAAAAAAAAAAAAATTGCTATGCTTGCTGCAATTTCATGGTTGGTGCTTCTTTCATCAAAGAGATTAGAAGTTGTCTTTGCCTACCCGAAATAAAGACTTAGTTGTAAAGCATTCATTTTTTCATTTAGCATGAAACACCCGCTTGCAAAGATTTTCGTCGACCTTTTAGGCCATTTAATTGAAGAAGGATTATCTAGTTGTTCACAAAGCATGTACAAATGTGCACAAGTATGTTTCAACTTCTTGATTGTAGATTTTGACTAGAACGATATCACCTTTGTGCATTTTGTTAGGTCTTTTGCTTGTGGTAGTCTTCCTTGATTGAACCTAAGGTCTTATATGCAGGCCAATCTGGAGAAATAACTACAGGTCATTTGCTTCTTGCTATTTGGTCAGAGGAATCGGCAGGTCGCAAGATCTTGGCCACCCTTGGCTTTGATGGTGAGAAAGCGAAAGAGATCGAAAAAACCGTAAGTTTTAAGTTGTTTTTTTTGTAATTAGTAGCACCCTCTGGACTTGATGATATACTCCACCAATACGTTTTCATTGTTCACAGGTGGACAATGATGCAACTTTCAGTTATAAGTAGATGGATTGTGTTGGAAGATGTGATGCAATTTTCATATCTTCGTGGATGGAATCCTCACAAAGGAACGCCCAAATGAAACTCATATGACTTGGACCCTCGTGCATCCATTGGTTGTATAGCGATTTGCCTGTTTAATCAGCACCTGCCGCTCAACATTATCAGATTCATTTTGAATTGGCTATTGTTCGAACTTATGGAGTGCTGGTATGGTACGCTACGCTACATTTTAGTGGTCTCAAATTGCTTGCAGGGCATAGTTTTCTTACTGTGGCTTTTTTTGGACAAGCTGAAAAGTGAATAATAACCCCTATATTTAATACATAAGATTCTTAATTTAATCTTTGCAAGCCATCCACG

mRNA sequence

TAGTATCAATTCCCTCGGGACCTGATTTCAATCTCCTCCAAAATTGAGCTTTCCTTAGCTTCTAATGGCGGCAACTCGCATGAATTCTCTTTCGCTTTCCCTAGTCCCATGTTCCCTTCCGGCTCAATCTAATTGTTACTCTTTAGAACCCAAAACTCTATTCCTTCCCGTCAGCCCTCTAATCCAGCTCAACCTCGCAATTAAGCGTTCTAATGCCACCCATTCCGTCTCGAAGTTCACTCGCCGTGCCACCACTGCCACTGTATCGTTTAGCCTCCCGGCTTCGAAACCCGAGGGCGTTTCCCCAGATAAACTCCCCAAATGGTCAGCTAGAGCAATAAAGTCATTTGCAATGGCAGAATTGGAAGCAAGGAAACTCAAATATCCAAATACAGGCACAGAAGCTTTGTTAATGGGAATTTTAATCGAGGGAACAAATATTGCTGCCAGATTCTTAAGGGCTAACGGAATTACACTTTTCAAGGTAAGAGAAGAAACTGTCAAGCTACTTGGAAAATCTGACATGTATTTCTTCAGCCCAGAGCATCCTCCATTGACTGAATCTGCTCAGAGGGCACTTGATTGGGCTGTTGCAGAGAAGTTAAAGTCCGGCCAATCTGGAGAAATAACTACAGGTCATTTGCTTCTTGCTATTTGGTCAGAGGAATCGGCAGGTCGCAAGATCTTGGCCACCCTTGGCTTTGATGGTGAGAAAGCGAAAGAGATCGAAAAAACCGTGGACAATGATGCAACTTTCAGTTATAAGTAGATGGATTGTGTTGGAAGATGTGATGCAATTTTCATATCTTCGTGGATGGAATCCTCACAAAGGAACGCCCAAATGAAACTCATATGACTTGGACCCTCGTGCATCCATTGGTTGTATAGCGATTTGCCTGTTTAATCAGCACCTGCCGCTCAACATTATCAGATTCATTTTGAATTGGCTATTGTTCGAACTTATGGAGTGCTGGTATGGTACGCTACGCTACATTTTAGTGGTCTCAAATTGCTTGCAGGGCATAGTTTTCTTACTGTGGCTTTTTTTGGACAAGCTGAAAAGTGAATAATAACCCCTATATTTAATACATAAGATTCTTAATTTAATCTTTGCAAGCCATCCACG

Coding sequence (CDS)

ATGGCGGCAACTCGCATGAATTCTCTTTCGCTTTCCCTAGTCCCATGTTCCCTTCCGGCTCAATCTAATTGTTACTCTTTAGAACCCAAAACTCTATTCCTTCCCGTCAGCCCTCTAATCCAGCTCAACCTCGCAATTAAGCGTTCTAATGCCACCCATTCCGTCTCGAAGTTCACTCGCCGTGCCACCACTGCCACTGTATCGTTTAGCCTCCCGGCTTCGAAACCCGAGGGCGTTTCCCCAGATAAACTCCCCAAATGGTCAGCTAGAGCAATAAAGTCATTTGCAATGGCAGAATTGGAAGCAAGGAAACTCAAATATCCAAATACAGGCACAGAAGCTTTGTTAATGGGAATTTTAATCGAGGGAACAAATATTGCTGCCAGATTCTTAAGGGCTAACGGAATTACACTTTTCAAGGTAAGAGAAGAAACTGTCAAGCTACTTGGAAAATCTGACATGTATTTCTTCAGCCCAGAGCATCCTCCATTGACTGAATCTGCTCAGAGGGCACTTGATTGGGCTGTTGCAGAGAAGTTAAAGTCCGGCCAATCTGGAGAAATAACTACAGGTCATTTGCTTCTTGCTATTTGGTCAGAGGAATCGGCAGGTCGCAAGATCTTGGCCACCCTTGGCTTTGATGGTGAGAAAGCGAAAGAGATCGAAAAAACCGTGGACAATGATGCAACTTTCAGTTATAAGTAG
Homology
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BLAST of CmoCh16G001810 vs. Swiss-Prot
Match: CLPT1_ARATH (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic OS=Arabidopsis thaliana GN=CLPT1 PE=1 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 5.6e-60
Identity = 113/176 (64.20%), Postives = 144/176 (81.82%), Query Frame = 1 

Query: 60  RRATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGI 119
           R  T+A+   ++P ++PE  S DK+PKWSARAIKS AM ELEARKLKYP+TGTEA+LMGI
Sbjct: 59  RCLTSASTVLNVPIAQPENGSSDKIPKWSARAIKSLAMGELEARKLKYPSTGTEAILMGI 118

Query: 120 LIEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEK 179
           L+EGT+  A+FLR NG+TLFKVR+ET+ LLGKSDMYFFSPEHPPLTE AQ+A+ WA+ EK
Sbjct: 119 LVEGTSTVAKFLRGNGVTLFKVRDETLSLLGKSDMYFFSPEHPPLTEPAQKAIAWAIDEK 178

Query: 180 LKSGQSGEITTGHLLLAIWSE-ESAGRKILATLGFDGEKAKEIEKTVDNDATFSYK 235
            KS   GE+TT +LLL +WS+ +SAGR+IL  LGF+ +KAKE+EK+++ D   S+K
Sbjct: 179 NKSDVDGELTTAYLLLGVWSQKDSAGRQILEKLGFNEDKAKEVEKSMNEDVDLSFK 234

[Close]
BLAST of CmoCh16G001810 vs. Swiss-Prot
Match: CLPT2_ARATH (ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic OS=Arabidopsis thaliana GN=CLPT2 PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 9.2e-55
Identity = 116/165 (70.30%), Postives = 132/165 (80.00%), Query Frame = 1 

Query: 60  RRATTATVSFSLPASKPEGVSPD-KLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMG 119
           RR   + +S SLP + P+ V  D K PKWS RAIKSFAM ELEARKLKYPNTGTEALLMG
Sbjct: 67  RRIHKSAIS-SLPTANPDLVVSDAKKPKWSWRAIKSFAMGELEARKLKYPNTGTEALLMG 126

Query: 120 ILIEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAE 179
           ILIEGT+  ++FLRAN I L+KVREETVKLLGK+DMYFFSPEHPPLTE AQRALD A+ +
Sbjct: 127 ILIEGTSFTSKFLRANKIMLYKVREETVKLLGKADMYFFSPEHPPLTEDAQRALDSALDQ 186

Query: 180 KLKSGQSGEITTGHLLLAIWSE-ESAGRKILATLGFDGEKAKEIE 223
            LK+G  GE+   H+LL IWSE ES G KILATLGF  EK+KE+E
Sbjct: 187 NLKAGGIGEVMPAHILLGIWSEVESPGHKILATLGFTDEKSKELE 230

[Close]
BLAST of CmoCh16G001810 vs. Swiss-Prot
Match: CLPC2_ORYSJ (Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPC2 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 4.3e-12
Identity = 54/168 (32.14%), Postives = 89/168 (52.98%), Query Frame = 1 

Query: 48  RSNATHSVSKFTRRATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKY 107
           RS  + SV+  T   +T     S    +   V+     +++ +AIK   +A+ EAR+L +
Sbjct: 53  RSVHSFSVTPVTNFRSTVASYRSRRGRRARFVTRSMFERFTEKAIKVIMLAQEEARRLGH 112

Query: 108 PNTGTEALLMGILIEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTES 167
              GTE +L+G++ EGT IAA+ L++ GI L   R E  K++G+ +   F     P T  
Sbjct: 113 NFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGN--GFVAVEIPFTPR 172

Query: 168 AQRALDWAVAEKLKSGQSGEITTGHLLLAIWSE-ESAGRKILATLGFD 215
           A+R L+ ++ E  + G +  I + HLLL +  E E    ++L +LG D
Sbjct: 173 AKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLESLGAD 217

[Close]
BLAST of CmoCh16G001810 vs. Swiss-Prot
Match: CLPC1_ORYSJ (Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPC1 PE=2 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 9.6e-12
Identity = 48/138 (34.78%), Postives = 77/138 (55.80%), Query Frame = 1 

Query: 78  GVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTNIAARFLRANGIT 137
           GV      +++ +AIK   +A+ EAR+L +   GTE +L+G++ EGT IAA+ L++ GI 
Sbjct: 82  GVVRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGIN 141

Query: 138 LFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKLKSGQSGEITTGHLLLAI 197
           L   R E  K++G+     F     P T  A+R L+ ++ E  + G +  I + HLLL +
Sbjct: 142 LKDARVEVEKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGL 201

Query: 198 WSE-ESAGRKILATLGFD 215
             E E    ++L +LG D
Sbjct: 202 LREGEGVAARVLESLGAD 216

[Close]
BLAST of CmoCh16G001810 vs. Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.6e-12
Identity = 50/149 (33.56%), Postives = 81/149 (54.36%), Query Frame = 1 

Query: 68  SFSLPASK-PEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTNI 127
           + ++P  K   GV      +++ +AIK   +A+ EAR+L +   GTE +L+G++ EGT I
Sbjct: 25  AMNVPKGKGSRGVVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGI 84

Query: 128 AARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKLKSGQSG 187
           AA+ L++ GI L   R E  K++G+     F     P T  A+R L+ ++ E  + G + 
Sbjct: 85  AAKVLKSMGINLKDARVEVEKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN- 144

Query: 188 EITTGHLLLAIWSE-ESAGRKILATLGFD 215
            I + HLLL +  E E    ++L  LG D
Sbjct: 145 YIGSEHLLLGLLREGEGVAARVLENLGAD 170

[Close]
BLAST of CmoCh16G001810 vs. TrEMBL
Match: A0A0A0L8F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G177380 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 2.3e-105
Identity = 203/234 (86.75%), Postives = 213/234 (91.03%), Query Frame = 1 

Query: 1   MAATRMNSLSLSLVPCSLPAQSNCYSLEPKTLFLPVSPLIQLNLAIKRSNATHSVSKFTR 60
           MAATR NSLS S +P SLP+QSNC+SLE K    P+SPLIQL LAIKRSNATH V KF+R
Sbjct: 1   MAATRFNSLSFSPLPLSLPSQSNCHSLEHKPPLFPLSPLIQLKLAIKRSNATHPVLKFSR 60

Query: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RATTATVSFSLPASKPEGV P+KLPKWSARAIKSFAM ELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGVPPEKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180
           IEGT+ AA+FLRANGITLFKVREETVKLLGK+DMYF SPEHPPLTE AQ+ALDWAVAEKL
Sbjct: 121 IEGTSTAAKFLRANGITLFKVREETVKLLGKADMYFCSPEHPPLTEPAQKALDWAVAEKL 180

Query: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDGEKAKEIEKTVDNDATFSYK 235
           KSGQSGEITTGHLLL IWSEESAGRKILATLGFD EKAKEI KTVD DATFSYK
Sbjct: 181 KSGQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIAKTVDKDATFSYK 234

[Close]
BLAST of CmoCh16G001810 vs. TrEMBL
Match: A0A067FQC3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026790mg PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.2e-71
Identity = 146/205 (71.22%), Postives = 169/205 (82.44%), Query Frame = 1 

Query: 33  FLPVSPLIQLNLAIK-RSNATHSVSKFTRRATTATVSFSLPAS-KPEGVSPDKLPKWSAR 92
           FLP S +    L I+ + N++  V+K+ R + TATVSFSLP + KPE  SPDK+PKWSAR
Sbjct: 29  FLPSSSMFGNKLLIRPQLNSSRFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSAR 88

Query: 93  AIKSFAMAELEARKLKYPNTGTEALLMGILIEGTNIAARFLRANGITLFKVREETVKLLG 152
           AI+SFAMAELEARKLKYPNTGTEA LMGIL+EGT+  A+FLRANGITLFKVREET+ LLG
Sbjct: 89  AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLG 148

Query: 153 KSDMYFFSPEHPPLTESAQRALDWAVAEKLKSGQSGEITTGHLLLAIWSE-ESAGRKILA 212
           KSD++FFSPE PPLTE AQRALDWA  EKLKSG+SGEITT HLLL IWSE ESAG KILA
Sbjct: 149 KSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILA 208

Query: 213 TLGFDGEKAKEIEKTVDNDATFSYK 235
           TLGF+ EKAKEI K+++ D   S+K
Sbjct: 209 TLGFNDEKAKEIAKSINEDTILSFK 233

[Close]
BLAST of CmoCh16G001810 vs. TrEMBL
Match: A0A061G188_THECC (Double Clp-N motif protein OS=Theobroma cacao GN=TCM_014991 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 3.7e-71
Identity = 156/236 (66.10%), Postives = 183/236 (77.54%), Query Frame = 1 

Query: 1   MAATRMNSLSLSLVPC-SLPAQSNCYSLEPKTLFLPVSPLIQLNLAIKRSNATHSVSKFT 60
           MA  R++ L +S+    SLP++ + + L      LP+S L    L +K S+ +  V+K  
Sbjct: 1   MATYRLSFLPISISASQSLPSKRHDFRLS-----LPLSSLYGNKLLLKTSDLSLFVTKH- 60

Query: 61  RRATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGI 120
             +TTATVSFSLP +KPE    +K PKWSAR+IKSFAMAELEARKLKYPNTGTEALLMGI
Sbjct: 61  HSSTTATVSFSLPTAKPERAPSEKSPKWSARSIKSFAMAELEARKLKYPNTGTEALLMGI 120

Query: 121 LIEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEK 180
           L+EGT+ AA+FLR NGITLFKVREETV LLGKSDMYFFSPEHPPLTE AQRALDWAV EK
Sbjct: 121 LVEGTSQAAKFLRDNGITLFKVREETVNLLGKSDMYFFSPEHPPLTEQAQRALDWAVDEK 180

Query: 181 LKSGQSGEITTGHLLLAIWSE-ESAGRKILATLGFDGEKAKEIEKTVDNDATFSYK 235
           LKSG+SGEITT +LLL IWSE ESAG KILATLGF+ EKAKE+ K ++ D   +YK
Sbjct: 181 LKSGESGEITTTYLLLGIWSEKESAGYKILATLGFNDEKAKELTKYINEDIVLNYK 230

[Close]
BLAST of CmoCh16G001810 vs. TrEMBL
Match: V4RLC2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005783mg PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 8.4e-71
Identity = 145/205 (70.73%), Postives = 169/205 (82.44%), Query Frame = 1 

Query: 33  FLPVSPLIQLNLAIK-RSNATHSVSKFTRRATTATVSFSLPAS-KPEGVSPDKLPKWSAR 92
           FLP S +    L I+ + +++  V+K+ R + TATVSFSLP + KPE  SPDK+PKWSAR
Sbjct: 29  FLPSSSMFGNKLLIRPQLSSSRFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSAR 88

Query: 93  AIKSFAMAELEARKLKYPNTGTEALLMGILIEGTNIAARFLRANGITLFKVREETVKLLG 152
           AI+SFAMAELEARKLKYPNTGTEA LMGIL+EGT+  A+FLRANGITLFKVREET+ LLG
Sbjct: 89  AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLG 148

Query: 153 KSDMYFFSPEHPPLTESAQRALDWAVAEKLKSGQSGEITTGHLLLAIWSE-ESAGRKILA 212
           KSD++FFSPE PPLTE AQRALDWA  EKLKSG+SGEITT HLLL IWSE ESAG KILA
Sbjct: 149 KSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILA 208

Query: 213 TLGFDGEKAKEIEKTVDNDATFSYK 235
           TLGF+ EKAKEI K+++ D   S+K
Sbjct: 209 TLGFNDEKAKEIAKSINEDTILSFK 233

[Close]
BLAST of CmoCh16G001810 vs. TrEMBL
Match: A0A067FPJ8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026790mg PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.2e-69
Identity = 144/198 (72.73%), Postives = 165/198 (83.33%), Query Frame = 1 

Query: 33  FLPVSPLIQLNLAIK-RSNATHSVSKFTRRATTATVSFSLPAS-KPEGVSPDKLPKWSAR 92
           FLP S +    L I+ + N++  V+K+ R + TATVSFSLP + KPE  SPDK+PKWSAR
Sbjct: 29  FLPSSSMFGNKLLIRPQLNSSRFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSAR 88

Query: 93  AIKSFAMAELEARKLKYPNTGTEALLMGILIEGTNIAARFLRANGITLFKVREETVKLLG 152
           AI+SFAMAELEARKLKYPNTGTEA LMGIL+EGT+  A+FLRANGITLFKVREET+ LLG
Sbjct: 89  AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLG 148

Query: 153 KSDMYFFSPEHPPLTESAQRALDWAVAEKLKSGQSGEITTGHLLLAIWSE-ESAGRKILA 212
           KSD++FFSPE PPLTE AQRALDWA  EKLKSG+SGEITT HLLL IWSE ESAG KILA
Sbjct: 149 KSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILA 208

Query: 213 TLGFDGEKAKEIEKTVDN 228
           TLGF+ EKAKEI K+V +
Sbjct: 209 TLGFNDEKAKEIAKSVSS 226

[Close]
BLAST of CmoCh16G001810 vs. TAIR10
Match: AT4G25370.1 (AT4G25370.1 Double Clp-N motif protein)

HSP 1 Score: 232.3 bits (591), Expect = 3.1e-61
Identity = 113/176 (64.20%), Postives = 144/176 (81.82%), Query Frame = 1 

Query: 60  RRATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGI 119
           R  T+A+   ++P ++PE  S DK+PKWSARAIKS AM ELEARKLKYP+TGTEA+LMGI
Sbjct: 59  RCLTSASTVLNVPIAQPENGSSDKIPKWSARAIKSLAMGELEARKLKYPSTGTEAILMGI 118

Query: 120 LIEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEK 179
           L+EGT+  A+FLR NG+TLFKVR+ET+ LLGKSDMYFFSPEHPPLTE AQ+A+ WA+ EK
Sbjct: 119 LVEGTSTVAKFLRGNGVTLFKVRDETLSLLGKSDMYFFSPEHPPLTEPAQKAIAWAIDEK 178

Query: 180 LKSGQSGEITTGHLLLAIWSE-ESAGRKILATLGFDGEKAKEIEKTVDNDATFSYK 235
            KS   GE+TT +LLL +WS+ +SAGR+IL  LGF+ +KAKE+EK+++ D   S+K
Sbjct: 179 NKSDVDGELTTAYLLLGVWSQKDSAGRQILEKLGFNEDKAKEVEKSMNEDVDLSFK 234

[Close]
BLAST of CmoCh16G001810 vs. TAIR10
Match: AT4G12060.1 (AT4G12060.1 Double Clp-N motif protein)

HSP 1 Score: 214.9 bits (546), Expect = 5.2e-56
Identity = 116/165 (70.30%), Postives = 132/165 (80.00%), Query Frame = 1 

Query: 60  RRATTATVSFSLPASKPEGVSPD-KLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMG 119
           RR   + +S SLP + P+ V  D K PKWS RAIKSFAM ELEARKLKYPNTGTEALLMG
Sbjct: 67  RRIHKSAIS-SLPTANPDLVVSDAKKPKWSWRAIKSFAMGELEARKLKYPNTGTEALLMG 126

Query: 120 ILIEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAE 179
           ILIEGT+  ++FLRAN I L+KVREETVKLLGK+DMYFFSPEHPPLTE AQRALD A+ +
Sbjct: 127 ILIEGTSFTSKFLRANKIMLYKVREETVKLLGKADMYFFSPEHPPLTEDAQRALDSALDQ 186

Query: 180 KLKSGQSGEITTGHLLLAIWSE-ESAGRKILATLGFDGEKAKEIE 223
            LK+G  GE+   H+LL IWSE ES G KILATLGF  EK+KE+E
Sbjct: 187 NLKAGGIGEVMPAHILLGIWSEVESPGHKILATLGFTDEKSKELE 230

[Close]
BLAST of CmoCh16G001810 vs. TAIR10
Match: AT5G50920.1 (AT5G50920.1 CLPC homologue 1)

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-12
Identity = 46/130 (35.38%), Postives = 74/130 (56.92%), Query Frame = 1 

Query: 86  KWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTNIAARFLRANGITLFKVREET 145
           +++ +AIK   +A+ EAR+L +   GTE +L+G++ EGT IAA+ L++ GI L   R E 
Sbjct: 97  RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 156

Query: 146 VKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKLKSGQSGEITTGHLLLAIWSE-ESAG 205
            K++G+     F     P T  A+R L+ ++ E  + G +  I + HLLL +  E E   
Sbjct: 157 EKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVA 216

Query: 206 RKILATLGFD 215
            ++L  LG D
Sbjct: 217 ARVLENLGAD 223

[Close]
BLAST of CmoCh16G001810 vs. TAIR10
Match: AT3G48870.1 (AT3G48870.1 Clp ATPase)

HSP 1 Score: 68.9 bits (167), Expect = 4.6e-12
Identity = 45/130 (34.62%), Postives = 74/130 (56.92%), Query Frame = 1 

Query: 86  KWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTNIAARFLRANGITLFKVREET 145
           +++ +AIK   +++ EAR+L +   GTE +L+G++ EGT IAA+ L++ GI L   R E 
Sbjct: 117 RFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDSRVEV 176

Query: 146 VKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKLKSGQSGEITTGHLLLAIWSE-ESAG 205
            K++G+     F     P T  A+R L+ ++ E  + G +  I + HLLL +  E E   
Sbjct: 177 EKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVA 236

Query: 206 RKILATLGFD 215
            ++L  LG D
Sbjct: 237 ARVLENLGAD 243

[Close]
BLAST of CmoCh16G001810 vs. TAIR10
Match: AT3G45450.1 (AT3G45450.1 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-07
Identity = 27/66 (40.91%), Postives = 44/66 (66.67%), Query Frame = 1 

Query: 86  KWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTNIAARFLRANGITLFKVREET 145
           +++ +AIK   +A+ EAR+L Y   GTE +L+ ++ EGT IAA+ L++ GI L   R E 
Sbjct: 4   RFTEKAIKVITLAQEEARRLGYNFFGTEHILLSLIGEGTGIAAKVLKSMGINLKDARVEV 63

Query: 146 VKLLGK 152
            K++G+
Sbjct: 64  EKIIGR 69

[Close]
BLAST of CmoCh16G001810 vs. NCBI nr
Match: gi|659077269|ref|XP_008439115.1| (PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Cucumis melo])

HSP 1 Score: 401.0 bits (1029), Expect = 1.4e-108
Identity = 208/234 (88.89%), Postives = 217/234 (92.74%), Query Frame = 1 

Query: 1   MAATRMNSLSLSLVPCSLPAQSNCYSLEPKTLFLPVSPLIQLNLAIKRSNATHSVSKFTR 60
           MAATR+NSLS S +P SLP+QSNCYSLE K L  P++PLI+L LAIKRSNATH VSKFTR
Sbjct: 1   MAATRLNSLSFSQLPLSLPSQSNCYSLEHKPLLFPLTPLIELKLAIKRSNATHPVSKFTR 60

Query: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RAT ATVSFSLPASKPEGVSP+KLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATAATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180
           IEGT+ AA+FLRANGITLFKVREETVKLLGKSDMYFFS EHPPLTE AQRALDWAVAEKL
Sbjct: 121 IEGTSTAAKFLRANGITLFKVREETVKLLGKSDMYFFSSEHPPLTEPAQRALDWAVAEKL 180

Query: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDGEKAKEIEKTVDNDATFSYK 235
           KSGQSGEITTGHLLL IWSEESAGRKILATLGFD EKAKEI KTVD DATFSYK
Sbjct: 181 KSGQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIAKTVDKDATFSYK 234

[Close]
BLAST of CmoCh16G001810 vs. NCBI nr
Match: gi|449460786|ref|XP_004148125.1| (PREDICTED: clp protease-related protein At4g12060, chloroplastic [Cucumis sativus])

HSP 1 Score: 389.8 bits (1000), Expect = 3.3e-105
Identity = 203/234 (86.75%), Postives = 213/234 (91.03%), Query Frame = 1 

Query: 1   MAATRMNSLSLSLVPCSLPAQSNCYSLEPKTLFLPVSPLIQLNLAIKRSNATHSVSKFTR 60
           MAATR NSLS S +P SLP+QSNC+SLE K    P+SPLIQL LAIKRSNATH V KF+R
Sbjct: 1   MAATRFNSLSFSPLPLSLPSQSNCHSLEHKPPLFPLSPLIQLKLAIKRSNATHPVLKFSR 60

Query: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RATTATVSFSLPASKPEGV P+KLPKWSARAIKSFAM ELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGVPPEKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180
           IEGT+ AA+FLRANGITLFKVREETVKLLGK+DMYF SPEHPPLTE AQ+ALDWAVAEKL
Sbjct: 121 IEGTSTAAKFLRANGITLFKVREETVKLLGKADMYFCSPEHPPLTEPAQKALDWAVAEKL 180

Query: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDGEKAKEIEKTVDNDATFSYK 235
           KSGQSGEITTGHLLL IWSEESAGRKILATLGFD EKAKEI KTVD DATFSYK
Sbjct: 181 KSGQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIAKTVDKDATFSYK 234

[Close]
BLAST of CmoCh16G001810 vs. NCBI nr
Match: gi|568874300|ref|XP_006490254.1| (PREDICTED: ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Citrus sinensis])

HSP 1 Score: 276.9 bits (707), Expect = 3.2e-71
Identity = 146/205 (71.22%), Postives = 169/205 (82.44%), Query Frame = 1 

Query: 33  FLPVSPLIQLNLAIK-RSNATHSVSKFTRRATTATVSFSLPAS-KPEGVSPDKLPKWSAR 92
           FLP S +    L I+ + N++  V+K+ R + TATVSFSLP + KPE  SPDK+PKWSAR
Sbjct: 29  FLPSSSMFGNKLLIRPQLNSSRFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSAR 88

Query: 93  AIKSFAMAELEARKLKYPNTGTEALLMGILIEGTNIAARFLRANGITLFKVREETVKLLG 152
           AI+SFAMAELEARKLKYPNTGTEA LMGIL+EGT+  A+FLRANGITLFKVREET+ LLG
Sbjct: 89  AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLG 148

Query: 153 KSDMYFFSPEHPPLTESAQRALDWAVAEKLKSGQSGEITTGHLLLAIWSE-ESAGRKILA 212
           KSD++FFSPE PPLTE AQRALDWA  EKLKSG+SGEITT HLLL IWSE ESAG KILA
Sbjct: 149 KSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILA 208

Query: 213 TLGFDGEKAKEIEKTVDNDATFSYK 235
           TLGF+ EKAKEI K+++ D   S+K
Sbjct: 209 TLGFNDEKAKEIAKSINEDTILSFK 233

[Close]
BLAST of CmoCh16G001810 vs. NCBI nr
Match: gi|590671940|ref|XP_007038471.1| (Double Clp-N motif protein [Theobroma cacao])

HSP 1 Score: 276.2 bits (705), Expect = 5.4e-71
Identity = 156/236 (66.10%), Postives = 183/236 (77.54%), Query Frame = 1 

Query: 1   MAATRMNSLSLSLVPC-SLPAQSNCYSLEPKTLFLPVSPLIQLNLAIKRSNATHSVSKFT 60
           MA  R++ L +S+    SLP++ + + L      LP+S L    L +K S+ +  V+K  
Sbjct: 1   MATYRLSFLPISISASQSLPSKRHDFRLS-----LPLSSLYGNKLLLKTSDLSLFVTKH- 60

Query: 61  RRATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGI 120
             +TTATVSFSLP +KPE    +K PKWSAR+IKSFAMAELEARKLKYPNTGTEALLMGI
Sbjct: 61  HSSTTATVSFSLPTAKPERAPSEKSPKWSARSIKSFAMAELEARKLKYPNTGTEALLMGI 120

Query: 121 LIEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEK 180
           L+EGT+ AA+FLR NGITLFKVREETV LLGKSDMYFFSPEHPPLTE AQRALDWAV EK
Sbjct: 121 LVEGTSQAAKFLRDNGITLFKVREETVNLLGKSDMYFFSPEHPPLTEQAQRALDWAVDEK 180

Query: 181 LKSGQSGEITTGHLLLAIWSE-ESAGRKILATLGFDGEKAKEIEKTVDNDATFSYK 235
           LKSG+SGEITT +LLL IWSE ESAG KILATLGF+ EKAKE+ K ++ D   +YK
Sbjct: 181 LKSGESGEITTTYLLLGIWSEKESAGYKILATLGFNDEKAKELTKYINEDIVLNYK 230

[Close]
BLAST of CmoCh16G001810 vs. NCBI nr
Match: gi|567858150|ref|XP_006421758.1| (hypothetical protein CICLE_v10005783mg [Citrus clementina])

HSP 1 Score: 275.0 bits (702), Expect = 1.2e-70
Identity = 145/205 (70.73%), Postives = 169/205 (82.44%), Query Frame = 1 

Query: 33  FLPVSPLIQLNLAIK-RSNATHSVSKFTRRATTATVSFSLPAS-KPEGVSPDKLPKWSAR 92
           FLP S +    L I+ + +++  V+K+ R + TATVSFSLP + KPE  SPDK+PKWSAR
Sbjct: 29  FLPSSSMFGNKLLIRPQLSSSRFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSAR 88

Query: 93  AIKSFAMAELEARKLKYPNTGTEALLMGILIEGTNIAARFLRANGITLFKVREETVKLLG 152
           AI+SFAMAELEARKLKYPNTGTEA LMGIL+EGT+  A+FLRANGITLFKVREET+ LLG
Sbjct: 89  AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLG 148

Query: 153 KSDMYFFSPEHPPLTESAQRALDWAVAEKLKSGQSGEITTGHLLLAIWSE-ESAGRKILA 212
           KSD++FFSPE PPLTE AQRALDWA  EKLKSG+SGEITT HLLL IWSE ESAG KILA
Sbjct: 149 KSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILA 208

Query: 213 TLGFDGEKAKEIEKTVDNDATFSYK 235
           TLGF+ EKAKEI K+++ D   S+K
Sbjct: 209 TLGFNDEKAKEIAKSINEDTILSFK 233

The following BLAST results are available for this feature:
BLAST of CmoCh16G001810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CLPT1_ARATH5.6e-6064.20ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic OS=Arabidops... [more]
CLPT2_ARATH9.2e-5570.30ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic OS=Arabidops... [more]
CLPC2_ORYSJ4.3e-1232.14Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPC2 ... [more]
CLPC1_ORYSJ9.6e-1234.78Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPC1 ... [more]
CLPA_BRANA9.6e-1233.56ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic (Frag... [more]
BLAST of CmoCh16G001810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8F6_CUCSA2.3e-10586.75Uncharacterized protein OS=Cucumis sativus GN=Csa_3G177380 PE=4 SV=1[more]
A0A067FQC3_CITSI2.2e-7171.22Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026790mg PE=4 SV=1[more]
A0A061G188_THECC3.7e-7166.10Double Clp-N motif protein OS=Theobroma cacao GN=TCM_014991 PE=4 SV=1[more]
V4RLC2_9ROSI8.4e-7170.73Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005783mg PE=4 SV=1[more]
A0A067FPJ8_CITSI1.2e-6972.73Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026790mg PE=4 SV=1[more]
BLAST of CmoCh16G001810 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G25370.13.1e-6164.20 Double Clp-N motif protein[more]
AT4G12060.15.2e-5670.30 Double Clp-N motif protein[more]
AT5G50920.11.2e-1235.38 CLPC homologue 1[more]
AT3G48870.14.6e-1234.62 Clp ATPase[more]
AT3G45450.11.5e-0740.91 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrola... [more]
BLAST of CmoCh16G001810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077269|ref|XP_008439115.1|1.4e-10888.89PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Cucumis m... [more]
gi|449460786|ref|XP_004148125.1|3.3e-10586.75PREDICTED: clp protease-related protein At4g12060, chloroplastic [Cucumis sativu... [more]
gi|568874300|ref|XP_006490254.1|3.2e-7171.22PREDICTED: ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [... [more]
gi|590671940|ref|XP_007038471.1|5.4e-7166.10Double Clp-N motif protein [Theobroma cacao][more]
gi|567858150|ref|XP_006421758.1|1.2e-7070.73hypothetical protein CICLE_v10005783mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004176Clp_N
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
biological_process GO:0019538 protein metabolic process
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009579 thylakoid
cellular_component GO:0044434 chloroplast part
cellular_component GO:0009532 plastid stroma
cellular_component GO:0005575 cellular_component
molecular_function GO:0008233 peptidase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G001810.1CmoCh16G001810.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004176Clp, N-terminalGENE3DG3DSA:1.10.1780.10coord: 86..220
score: 8.6
IPR004176Clp, N-terminalPFAMPF02861Clp_Ncoord: 98..150
score: 1.8E-9coord: 185..222
score: 7.
IPR004176Clp, N-terminalunknownSSF81923Double Clp-N motifcoord: 86..218
score: 7.06
NoneNo IPR availablePANTHERPTHR11638ATP-DEPENDENT CLP PROTEASEcoord: 42..203
score: 4.0
NoneNo IPR availablePANTHERPTHR11638:SF105SUBFAMILY NOT NAMEDcoord: 42..203
score: 4.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G001810Cucsa.251410Cucumber (Gy14) v1cgycmoB0704
CmoCh16G001810CmaCh16G001760Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G001810CmaCh18G011950Cucurbita maxima (Rimu)cmacmoB405
CmoCh16G001810Cla006249Watermelon (97103) v1cmowmB310
CmoCh16G001810Csa3G177380Cucumber (Chinese Long) v2cmocuB317
CmoCh16G001810MELO3C006835Melon (DHL92) v3.5.1cmomeB289
CmoCh16G001810ClCG05G007500Watermelon (Charleston Gray)cmowcgB290
CmoCh16G001810CSPI03G16170Wild cucumber (PI 183967)cmocpiB325
CmoCh16G001810Lsi05G013040Bottle gourd (USVL1VR-Ls)cmolsiB300
CmoCh16G001810Cp4.1LG09g01460Cucurbita pepo (Zucchini)cmocpeB303
CmoCh16G001810Cp4.1LG14g05610Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G001810MELO3C006835.2Melon (DHL92) v3.6.1cmomedB331
CmoCh16G001810CsaV3_3G016360Cucumber (Chinese Long) v3cmocucB0379
CmoCh16G001810Cla97C05G089360Watermelon (97103) v2cmowmbB331
CmoCh16G001810Bhi01G000921Wax gourdcmowgoB0436
CmoCh16G001810CsGy3G016260Cucumber (Gy14) v2cgybcmoB312
CmoCh16G001810Carg16723Silver-seed gourdcarcmoB1175
CmoCh16G001810Carg17227Silver-seed gourdcarcmoB0139
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh16G001810CmoCh18G012160Cucurbita moschata (Rifu)cmocmoB275
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G001810Cucumber (Chinese Long) v3cmocucB0407
CmoCh16G001810Watermelon (97103) v2cmowmbB334
CmoCh16G001810Cucurbita moschata (Rifu)cmocmoB239
CmoCh16G001810Cucurbita moschata (Rifu)cmocmoB281
CmoCh16G001810Cucurbita moschata (Rifu)cmocmoB297
CmoCh16G001810Cucumber (Gy14) v1cgycmoB0997
CmoCh16G001810Cucurbita maxima (Rimu)cmacmoB587
CmoCh16G001810Cucurbita maxima (Rimu)cmacmoB886
CmoCh16G001810Wild cucumber (PI 183967)cmocpiB343
CmoCh16G001810Cucumber (Chinese Long) v2cmocuB336
CmoCh16G001810Melon (DHL92) v3.5.1cmomeB279
CmoCh16G001810Watermelon (Charleston Gray)cmowcgB292
CmoCh16G001810Watermelon (97103) v1cmowmB320
CmoCh16G001810Cucurbita pepo (Zucchini)cmocpeB322
CmoCh16G001810Cucumber (Gy14) v2cgybcmoB731
CmoCh16G001810Melon (DHL92) v3.6.1cmomedB316
CmoCh16G001810Silver-seed gourdcarcmoB0966