CmoCh16G000760 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTGAATGAATGAAGAATCATCACATGGGTTTGCGTGGGATTCCCAAAACTTGCGCTCCAAACCCAAACACTATTAATAAACCCCAATCCCTCCATCTCCACACACCCTTGTTCTTGTTCTTGTTCTTCTATATCTCAGCATTGGATTGAATAATCGCCAAAGACAGAGAGATGGGTGTTTTGAGAGCTTGTTTTGGGATCTATGCTGTGATTATTGCTGTGGTTTATGTTGTTATGTTGCCTGTATCTGCTGCAGCGGAACATTCGTCTTTTCCAGCTCCAGCCCCAGCCCCCACTAGTGATGGTAACTTCTCTCTTCTTCCTGCTTTTCTGTTTATTGCTTCAATACAAAACAAAATCTACTCTTTCTCTTATTCTGCTAATAAGACTTGCGATTTCATATGTTGCAGGCACCACAATAGACCAAGGCATAGCATATATTCTAATGCTGCTGGCTTTAGCGCTCACTTATATCATCCATTGATGCAACCAAACACAGAAGAACATTAACAGCATTCAATTCCGATTATGAATTACATTTTCAAGTGAACGAGTTGAAAGGGAAGATGGTGTGGTTGTTTCATTCAAATGGGACTTTTTTTTTTCTCTTCTTTTCCTTCTTAAAAATTGGCAGAGATTTCATTTCCAGAAGCTCTCTTCTACTTGTATTATATATTCATTATTATTATTTTCTTCATTCATCATTATTTTCCTTTGTGTATTCTAAATGGAAGACTTAAAGATTTAACAGTTTACTATTTATACTAATAGGATTATG GTGAATGAATGAAGAATCATCACATGGGTTTGCGTGGGATTCCCAAAACTTGCGCTCCAAACCCAAACACTATTAATAAACCCCAATCCCTCCATCTCCACACACCCTTGTTCTTGTTCTTGTTCTTCTATATCTCAGCATTGGATTGAATAATCGCCAAAGACAGAGAGATGGGTGTTTTGAGAGCTTGTTTTGGGATCTATGCTGTGATTATTGCTGTGGTTTATGTTGTTATGTTGCCTGTATCTGCTGCAGCGGAACATTCGTCTTTTCCAGCTCCAGCCCCAGCCCCCACTAGTGATGGCACCACAATAGACCAAGGCATAGCATATATTCTAATGCTGCTGGCTTTAGCGCTCACTTATATCATCCATTGATGCAACCAAACACAGAAGAACATTAACAGCATTCAATTCCGATTATGAATTACATTTTCAAGTGAACGAGTTGAAAGGGAAGATGGTGTGGTTGTTTCATTCAAATGGGACTTTTTTTTTTCTCTTCTTTTCCTTCTTAAAAATTGGCAGAGATTTCATTTCCAGAAGCTCTCTTCTACTTGTATTATATATTCATTATTATTATTTTCTTCATTCATCATTATTTTCCTTTGTGTATTCTAAATGGAAGACTTAAAGATTTAACAGTTTACTATTTATACTAATAGGATTATG ATGGGTGTTTTGAGAGCTTGTTTTGGGATCTATGCTGTGATTATTGCTGTGGTTTATGTTGTTATGTTGCCTGTATCTGCTGCAGCGGAACATTCGTCTTTTCCAGCTCCAGCCCCAGCCCCCACTAGTGATGGCACCACAATAGACCAAGGCATAGCATATATTCTAATGCTGCTGGCTTTAGCGCTCACTTATATCATCCATTGA
BLAST of CmoCh16G000760 vs. Swiss-Prot
Match: AGP22_ARATH (Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 2.9e-09 Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1
BLAST of CmoCh16G000760 vs. Swiss-Prot
Match: AGP16_ARATH (Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 2.1e-07 Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 1
BLAST of CmoCh16G000760 vs. Swiss-Prot
Match: AGP20_ARATH (Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 2.1e-07 Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1
BLAST of CmoCh16G000760 vs. TrEMBL
Match: A0A0A0L7T5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G355060 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 2.5e-15 Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 1
BLAST of CmoCh16G000760 vs. TrEMBL
Match: A0A068UUM7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035511001 PE=4 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 4.1e-10 Identity = 43/67 (64.18%), Postives = 51/67 (76.12%), Query Frame = 1
BLAST of CmoCh16G000760 vs. TrEMBL
Match: Q8L9T8_ARATH (Arabinogalactan protein 41 OS=Arabidopsis thaliana GN=AGP41 PE=2 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 2.6e-09 Identity = 36/64 (56.25%), Postives = 51/64 (79.69%), Query Frame = 1
BLAST of CmoCh16G000760 vs. TrEMBL
Match: I3SDC6_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 2.6e-09 Identity = 36/61 (59.02%), Postives = 49/61 (80.33%), Query Frame = 1
BLAST of CmoCh16G000760 vs. TrEMBL
Match: A0A067JZA6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20491 PE=4 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 4.5e-09 Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1
BLAST of CmoCh16G000760 vs. TAIR10
Match: AT5G24105.1 (AT5G24105.1 arabinogalactan protein 41) HSP 1 Score: 68.9 bits (167), Expect = 1.3e-12 Identity = 36/64 (56.25%), Postives = 51/64 (79.69%), Query Frame = 1
BLAST of CmoCh16G000760 vs. TAIR10
Match: AT5G53250.1 (AT5G53250.1 arabinogalactan protein 22) HSP 1 Score: 62.0 bits (149), Expect = 1.6e-10 Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1
BLAST of CmoCh16G000760 vs. TAIR10
Match: AT2G46330.1 (AT2G46330.1 arabinogalactan protein 16) HSP 1 Score: 55.8 bits (133), Expect = 1.2e-08 Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 1
BLAST of CmoCh16G000760 vs. TAIR10
Match: AT3G61640.1 (AT3G61640.1 arabinogalactan protein 20) HSP 1 Score: 55.8 bits (133), Expect = 1.2e-08 Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1
BLAST of CmoCh16G000760 vs. NCBI nr
Match: gi|700202730|gb|KGN57863.1| (hypothetical protein Csa_3G355060 [Cucumis sativus]) HSP 1 Score: 89.0 bits (219), Expect = 3.5e-15 Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 1
BLAST of CmoCh16G000760 vs. NCBI nr
Match: gi|659130864|ref|XP_008465391.1| (PREDICTED: arabinogalactan peptide 22 [Cucumis melo]) HSP 1 Score: 79.0 bits (193), Expect = 3.7e-12 Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 1
BLAST of CmoCh16G000760 vs. NCBI nr
Match: gi|661884204|emb|CDP12121.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 71.6 bits (174), Expect = 5.8e-10 Identity = 43/67 (64.18%), Postives = 51/67 (76.12%), Query Frame = 1
BLAST of CmoCh16G000760 vs. NCBI nr
Match: gi|702488782|ref|XP_010035207.1| (PREDICTED: arabinogalactan peptide 16 [Eucalyptus grandis]) HSP 1 Score: 70.1 bits (170), Expect = 1.7e-09 Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 1
BLAST of CmoCh16G000760 vs. NCBI nr
Match: gi|42573463|ref|NP_974828.1| (arabinogalactan protein 41 [Arabidopsis thaliana]) HSP 1 Score: 68.9 bits (167), Expect = 3.8e-09 Identity = 36/64 (56.25%), Postives = 51/64 (79.69%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |