CmoCh16G000610 (gene) Cucurbita moschata (Rifu)

NameCmoCh16G000610
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSplicing factor-related
LocationCmo_Chr16 : 275550 .. 277140 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAATACAAACTCCGATGCGAAGCTGCGCCTGCAAGCAACAGAAGTTGAAGCTGGAGCTGATAGCGAGGGAGTGAGGTGGGTGGGTTAACATGTTGTCTACGCTGCTAGAGGTGATCCGCGCGTCACACGAGAAGGTAGTGCGACTCGAGCGGCTTATAGTGAAGGAGCTCCAAAATGAGCCTGCTTCTGTGTGCAGAGCCACCTTCTTGCTGGTCCCCTTATGTTATCGTTGCTTTTTGTGCAGGTAGAGATTCATGAAGACAAGGATAGTGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTCATGATAGACTGAATCAGATGATCATGAGAACAATTCTCATGGTGAACCCTGTAATCTCTCATTAAGGAGTTATCAAGTGGCGACATATACTGATCTGCAACTCCAGGGATTGATGTAAGAATCTCATGTATTTCTCTACTAACTTCTATCTGAATTTCTCTCTACTGAATGCTAGTTGAATGAATACAGATTACAAAAAGCAGAAGCAAATTATACTCATCCTCACCTTGTAATGCTTTTTTAAAACCTAAAATTTTGAGGAATCATGTTCTATTCCCATGCAGTAACCATTAATGTGGATTGAAGAAGATTTGCTTGTTTACCAACCACTAGATATAAATTTAGGATGGATCTTTACAATGAATTTGGTTACAAAATTTGAGTCTAAAAAACAATCGTCATTTGTTATGGCTTTCATGCAGGCAAGATCTAGTAAATAAAAGTGCAGATCCATCTACAGATCGAAGAATCAGGAGCCTGGAGTCCACATATGTCCCACAGATAAACTTCGACAAATCGAACAATGCCGGTGGAACTTGTGTCCGGACTTCCCGAGTTACATTTCTGGCAGCATCTATGTCTTCGCTCAGCGGAATGTCGAGACTCATTGTCAAATCAATGTCGCCTGAAATGAGCTTCACTGCTGGGAGGCTGGATGGAAGCTCCTCAAAAGGAATCACCTTCCTCCATCTCGTACTGGACAACTTCTGAGCCAGCACATGCTCTGCATTGGATTCACCAAAAGAAGGCTGACCAAGGGCAACAGTGTTTTCTTCCTTCAGGTACAGTCTTCTTCCAGCTTGTATTCTGGAGGAAGAGTTAATTACTAGTTTACCGTTGATGCCGATTTTATTGTGGGACCAGTTACGACCTCTCATGACTGTGAAGTTAATGTCTGAGGTCAATGAAAGGCGATTGTTTAGCTTAGAGTCTCTAGCAACTGTCAAGCACACATCTCCGATAAGAACTCTAGCGGGAGGTTGACGAAGGGTGAGCCCGATGTGCCTCCCAGTTGAGTATAAGAAACGCCACTTTCCTGGAATTAACTCCTGCCAATGCTGTATAGAGAAAGTCCAACATAAGCAGTTAGATGCTTACTCCTTGAACATAGACATAACAGGGGTCATTTTACAGCATATAGTTTGCAGCCCATATGGGATATGTGAACCGAAGATATCAACACAAGTTGCAGTTTTCAGGCAAGGTGATGCGTGTAAATATGTTCATATGCAGATGTTAACATAG

mRNA sequence

ATGTATAATACAAACTCCGATGCGAAGCTGCGCCTGCAAGCAACAGAAGTTGAAGCTGGAGCTGATAGCGAGGGAGTGAGGTGGGTAGAGATTCATGAAGACAAGGATAGTGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTCAGGAACCAACACTGAATCAGATGATCATGAGAACAATTCTCATGGTGAACCCTGTAATCTCTCATTAAGGAGTTATCAAGTGGCGACATATACTGATCTGCAACTCCAGGGATTGATGCAAGATCTAGTAAATAAAAGTGCAGATCCATCTACAGATCGAAGAATCAGGAGCCTGGAGTCCACATATGTCCCACAGATAAACTTCGACAAATCGAACAATGCCGGTGGAACTTGTGTCCGGACTTCCCGAGTTACATTTCTGGCAGCATCTATGTCTTCGCTCAGCGGAATGTCGAGACTCATTGTCAAATCAATGTCGCCTGAAATGAGCTTCACTGCTGGGAGGCTGGATGGAAGCTCCTCAAAAGGAATCACCTTCCTCCATCTCATGTTAACATAG

Coding sequence (CDS)

ATGTATAATACAAACTCCGATGCGAAGCTGCGCCTGCAAGCAACAGAAGTTGAAGCTGGAGCTGATAGCGAGGGAGTGAGGTGGGTAGAGATTCATGAAGACAAGGATAGTGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTCAGGAACCAACACTGAATCAGATGATCATGAGAACAATTCTCATGGTGAACCCTGTAATCTCTCATTAAGGAGTTATCAAGTGGCGACATATACTGATCTGCAACTCCAGGGATTGATGCAAGATCTAGTAAATAAAAGTGCAGATCCATCTACAGATCGAAGAATCAGGAGCCTGGAGTCCACATATGTCCCACAGATAAACTTCGACAAATCGAACAATGCCGGTGGAACTTGTGTCCGGACTTCCCGAGTTACATTTCTGGCAGCATCTATGTCTTCGCTCAGCGGAATGTCGAGACTCATTGTCAAATCAATGTCGCCTGAAATGAGCTTCACTGCTGGGAGGCTGGATGGAAGCTCCTCAAAAGGAATCACCTTCCTCCATCTCATGTTAACATAG
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G000610.1CmoCh16G000610.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G000610Cp4.1LG14g06790Cucurbita pepo (Zucchini)cmocpeB307
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G000610Wild cucumber (PI 183967)cmocpiB337
CmoCh16G000610Cucumber (Chinese Long) v2cmocuB329
CmoCh16G000610Melon (DHL92) v3.5.1cmomeB275
CmoCh16G000610Melon (DHL92) v3.5.1cmomeB289
CmoCh16G000610Watermelon (Charleston Gray)cmowcgB282
CmoCh16G000610Watermelon (Charleston Gray)cmowcgB290
CmoCh16G000610Watermelon (97103) v1cmowmB310
CmoCh16G000610Watermelon (97103) v1cmowmB312
CmoCh16G000610Cucurbita pepo (Zucchini)cmocpeB303
CmoCh16G000610Cucurbita pepo (Zucchini)cmocpeB306
CmoCh16G000610Cucurbita pepo (Zucchini)cmocpeB322
CmoCh16G000610Bottle gourd (USVL1VR-Ls)cmolsiB286
CmoCh16G000610Bottle gourd (USVL1VR-Ls)cmolsiB307
CmoCh16G000610Cucumber (Gy14) v2cgybcmoB307
CmoCh16G000610Cucumber (Gy14) v2cgybcmoB594
CmoCh16G000610Melon (DHL92) v3.6.1cmomedB312
CmoCh16G000610Melon (DHL92) v3.6.1cmomedB334
CmoCh16G000610Silver-seed gourdcarcmoB0692
CmoCh16G000610Silver-seed gourdcarcmoB0730
CmoCh16G000610Silver-seed gourdcarcmoB1326
CmoCh16G000610Cucumber (Chinese Long) v3cmocucB0374
CmoCh16G000610Cucumber (Chinese Long) v3cmocucB0398
CmoCh16G000610Watermelon (97103) v2cmowmbB307
CmoCh16G000610Watermelon (97103) v2cmowmbB328
CmoCh16G000610Watermelon (97103) v2cmowmbB331
CmoCh16G000610Wax gourdcmowgoB0424
CmoCh16G000610Wax gourdcmowgoB0435
CmoCh16G000610Wax gourdcmowgoB0440
CmoCh16G000610Cucurbita moschata (Rifu)cmocmoB236
CmoCh16G000610Cucurbita moschata (Rifu)cmocmoB275
CmoCh16G000610Cucurbita moschata (Rifu)cmocmoB281
CmoCh16G000610Cucumber (Gy14) v1cgycmoB0601
CmoCh16G000610Cucurbita maxima (Rimu)cmacmoB289
CmoCh16G000610Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G000610Cucurbita maxima (Rimu)cmacmoB405
CmoCh16G000610Cucurbita maxima (Rimu)cmacmoB587