CmoCh16G000490 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G000490
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BnaA03g48840D protein
Location	Cmo_Chr16 : 204971 .. 206157 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTTGTGGCATTTTCTCGTGAAGACGAAGCGCCAGGAGCGTTTTGCAGTTACCCTCACAATTCGCATCCTCATAAACTAACTCTGCCTCCACTTCTTTCGCTCTCTAAAACCCCCCTCTTTCTCTCTCTCTCTCTCTCTCTCTATAAAAATTCTCCCAATTCTACAGTAACTGATCATCCACTTCAACAGGGCCTTGTTGTATTCGTTCAAAATCAAATGGGTCCGTGAAATTTTGACGGAATGAGGCTTGCAAAAGGGGAAAATCCGAGCTCGACGCCACCAAAGCTGTCTCTGTTTTCTCTTCCAAGACAGCCGCCGGAGCCACCGGGGCTGGTGACGCCTCCGCTGCACGCGTCAATTTCTGTGCCGTTTCAATGGGAGGAGGCGCCAGGGAAACCAAGACCATTCGGAATGATCGAACCGAACTCAAAGCCCAGAAGTGCAAGATCCCTGGATCTGCCTCCGAGGCTGTTCACTGACACCAAAGTGGCTCATTTTTCCTCTCCAACGACCGCCGTGGACGACCCCGTCGTCGGCCAAGACCTGTCTTCCAATTTGTCGTTCAGGTTCCCCGACACGTGGGCGGAAACTGCAACAAGGGAGGGCAAGCATGGTAAATATGTCGGGTCTAGGCGGTGGATGAGCTTCAGGAAGAATAAGGAGGTCCCGAAGGGCGCGTCAGAAATACCGCGTTCGGCCGGCGGTGACAAAAGCGGTGGGCGTAATGCTGGGAGTGGCGACGGCGAAACGAGGGTGAAGATCACAAGGTTTAGGAGTAGAAGAAGCCTTTTTAGAAAATCGGATTCAAAGTCGCAGTTGATCGTAAGTGTCCTACATCAATTTTATTGGGTTCGTTAATGTTTAGAAACATTTATGAAATCAAAATTTAAAAGTTGTTCATTTAACTGGATCCAAATCACGGCAGGCAAGTATCTATGGGAGCTTGAAGCAAGTGATTCCATGGAGACGCAAGCCGGATGAAACCAGAGGAGTATCGCAATGATCATACGAATCCAGACATAACCCATAATATTAGTGAAATATCTAAATATGATGTCATAAATTTTCAACTATTTTTTTTTCTTCTAAAGAATCTTACTTATATACATTAAAATTACTATAATTACTACTTGTCTTTCGCATGTTTGGCTGTAAATATCCTTGTTTAACATAATTATAGAGCAC

mRNA sequence

AACTTGTGGCATTTTCTCGTGAAGACGAAGCGCCAGGAGCGTTTTGCAGTTACCCTCACAATTCGCATCCTCATAAACTAACTCTGCCTCCACTTCTTTCGCTCTCTAAAACCCCCCTCTTTCTCTCTCTCTCTCTCTCTCTCTATAAAAATTCTCCCAATTCTACAGTAACTGATCATCCACTTCAACAGGGCCTTGTTGTATTCGTTCAAAATCAAATGGGTCCGTGAAATTTTGACGGAATGAGGCTTGCAAAAGGGGAAAATCCGAGCTCGACGCCACCAAAGCTGTCTCTGTTTTCTCTTCCAAGACAGCCGCCGGAGCCACCGGGGCTGGTGACGCCTCCGCTGCACGCGTCAATTTCTGTGCCGTTTCAATGGGAGGAGGCGCCAGGGAAACCAAGACCATTCGGAATGATCGAACCGAACTCAAAGCCCAGAAGTGCAAGATCCCTGGATCTGCCTCCGAGGCTGTTCACTGACACCAAAGTGGCTCATTTTTCCTCTCCAACGACCGCCGTGGACGACCCCGTCGTCGGCCAAGACCTGTCTTCCAATTTGTCGTTCAGGTTCCCCGACACGTGGGCGGAAACTGCAACAAGGGAGGGCAAGCATGGTAAATATGTCGGGTCTAGGCGGTGGATGAGCTTCAGGAAGAATAAGGAGGTCCCGAAGGGCGCGTCAGAAATACCGCGTTCGGCCGGCGGTGACAAAAGCGGTGGGCGTAATGCTGGGAGTGGCGACGGCGAAACGAGGGTGAAGATCACAAGGTTTAGGAGTAGAAGAAGCCTTTTTAGAAAATCGGATTCAAAGTCGCAGTTGATCGCAAGTATCTATGGGAGCTTGAAGCAAGTGATTCCATGGAGACGCAAGCCGGATGAAACCAGAGGAGTATCGCAATGATCATACGAATCCAGACATAACCCATAATATTAGTGAAATATCTAAATATGATGTCATAAATTTTCAACTATTTTTTTTTCTTCTAAAGAATCTTACTTATATACATTAAAATTACTATAATTACTACTTGTCTTTCGCATGTTTGGCTGTAAATATCCTTGTTTAACATAATTATAGAGCAC

Coding sequence (CDS)

ATGAGGCTTGCAAAAGGGGAAAATCCGAGCTCGACGCCACCAAAGCTGTCTCTGTTTTCTCTTCCAAGACAGCCGCCGGAGCCACCGGGGCTGGTGACGCCTCCGCTGCACGCGTCAATTTCTGTGCCGTTTCAATGGGAGGAGGCGCCAGGGAAACCAAGACCATTCGGAATGATCGAACCGAACTCAAAGCCCAGAAGTGCAAGATCCCTGGATCTGCCTCCGAGGCTGTTCACTGACACCAAAGTGGCTCATTTTTCCTCTCCAACGACCGCCGTGGACGACCCCGTCGTCGGCCAAGACCTGTCTTCCAATTTGTCGTTCAGGTTCCCCGACACGTGGGCGGAAACTGCAACAAGGGAGGGCAAGCATGGTAAATATGTCGGGTCTAGGCGGTGGATGAGCTTCAGGAAGAATAAGGAGGTCCCGAAGGGCGCGTCAGAAATACCGCGTTCGGCCGGCGGTGACAAAAGCGGTGGGCGTAATGCTGGGAGTGGCGACGGCGAAACGAGGGTGAAGATCACAAGGTTTAGGAGTAGAAGAAGCCTTTTTAGAAAATCGGATTCAAAGTCGCAGTTGATCGCAAGTATCTATGGGAGCTTGAAGCAAGTGATTCCATGGAGACGCAAGCCGGATGAAACCAGAGGAGTATCGCAATGA

Homology

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BLAST of CmoCh16G000490 vs. TrEMBL
Match: E5GBA5_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 7.3e-93
Identity = 176/228 (77.19%), Postives = 189/228 (82.89%), Query Frame = 1


Query: 1   MRLAKGENPSSTPPKLSLFSLPRQPPEPPGLVTPPLHASISVPFQWEEAPGKPRPFGMIE 60
           MR   GENPSSTPPKLSLFSLPRQPPEPPG+VTPPLHASISVPFQWEEAPGKPRPFG+IE
Sbjct: 1   MRFVTGENPSSTPPKLSLFSLPRQPPEPPGMVTPPLHASISVPFQWEEAPGKPRPFGIIE 60

Query: 61  PNSKPRSARSLDLPPRLFTDTKVAHFSSPTTAVDDPVVGQDLSSNLSFRFPDTWAE---- 120
           PNSKP+SARSLDLPPRLF D KVAHF+SPTTAVD+P+ G+DLSS+LSFRFPDTWAE    
Sbjct: 61  PNSKPKSARSLDLPPRLFADAKVAHFASPTTAVDEPIFGRDLSSSLSFRFPDTWAETVRA 120

Query: 121 ------TATREGKHGKYVGSRRWMSFRKNKEVPKGASEIPRSAGGDKSGGRNAGSGDGET 180
                 T TREGK GKYVGSRRWMSFRKNKE+PK  SEI  + GGD    RN GS DGET
Sbjct: 121 TATATATGTREGKDGKYVGSRRWMSFRKNKEIPKSGSEIAVTGGGD----RNVGSSDGET 180

Query: 181 RVKITRFRSRRSLFRKSDSKSQLIASIYGSLKQVIPWRRKPDETRGVS 219
           RVKITRFRSRRS FRK +SKS  IA+IYGSLKQ I WRRK DE   +S
Sbjct: 181 RVKITRFRSRRSFFRKPNSKSHFIANIYGSLKQAISWRRKGDEMENIS 224

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BLAST of CmoCh16G000490 vs. TrEMBL
Match: A0A0A0LC85_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239250 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 2.4e-88
Identity = 171/226 (75.66%), Postives = 187/226 (82.74%), Query Frame = 1


Query: 1   MRLAKGENPSSTPPKLSLFSLPRQPPEPPGLVTPPLHASISVPFQWEEAPGKPRPFGMIE 60
           MR   GENPSSTPPKLSLFSLPRQPPEPPG+VTPPLHASISVPFQWEEAPGKPRP G+IE
Sbjct: 1   MRFITGENPSSTPPKLSLFSLPRQPPEPPGMVTPPLHASISVPFQWEEAPGKPRPSGIIE 60

Query: 61  PNSKPRSARSLDLPPRLFTDTKVAHFSSPTTAVDDPVVGQDLSSNLSFRFPDTWAET--- 120
           PNSKPRSARSLDLPPRLF D KVAHF+SPTT VD+P+ G DLSS+LSFRFPDTWAET   
Sbjct: 61  PNSKPRSARSLDLPPRLFADAKVAHFASPTTGVDEPIFGPDLSSSLSFRFPDTWAETATA 120

Query: 121 ---ATREGKHGKYVGSRRWMSFRKNKE--VPKGASEIPRSAGGDKSGGRNAGSGDGETRV 180
              AT+E K+GK+VGSRRWMSFRKNK+  +PK   EI  + GGD    RN GS DGETRV
Sbjct: 121 TAAATKEEKNGKHVGSRRWMSFRKNKKIVIPKSGPEITVTGGGD----RNGGSSDGETRV 180

Query: 181 KITRFRSRRSLFRKSDSKSQLIASIYGSLKQVIPWRRKPDETRGVS 219
           KITRFRS+RS FRK +SKS  IA+IYGSLKQVI WRRK DE   +S
Sbjct: 181 KITRFRSKRSFFRKPNSKSHFIANIYGSLKQVISWRRKGDEMENIS 222

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BLAST of CmoCh16G000490 vs. TrEMBL
Match: M5XFL1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015318mg PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.2e-41
Identity = 105/205 (51.22%), Postives = 129/205 (62.93%), Query Frame = 1


Query: 14  PKLSLFSLPRQPPEPPGLVTPPLHASISVPFQWEEAPGKPRPFGMIEPNSKPRSARSLDL 73
           PKLSLFSLP QPPEPPG++TPPL  S+SVPFQWEEAPGKPR     E  SK + ARSL+L
Sbjct: 15  PKLSLFSLPNQPPEPPGMLTPPLQTSVSVPFQWEEAPGKPRHCSTTE--SKAKCARSLEL 74

Query: 74  PPRLFTD-TKVAHFSSPTTAVDDPVVGQDLSSNLSFRFPDT-WAETATREGKHGKYVGSR 133
           PPRL  +  K  +  SPTT ++ P VG+ LS +   R PD+  ++   +E   G   GS 
Sbjct: 75  PPRLLNEAAKTTNMPSPTTVLEGPDVGRTLSFSFRVRSPDSLGSKRIGKESGRGGGFGSM 134

Query: 134 RWMSFRKNKE-VPKGASEIPRSAGGDKSGGRNAGSGDGETRVKITRFRSRRSLFRKSDSK 193
           +W SFRKNKE V  G  +    AGG   GG       GET+VKITR R R S    + +K
Sbjct: 135 KWGSFRKNKEVVDHGGFDFLPPAGGSGRGGA------GETKVKITRVRRRASFMSVTHTK 194

Query: 194 SQLIASIYGSLKQVIPWRRKPDETR 216
           S   ASIY S KQV+PWRR+ ++ R
Sbjct: 195 SHTWASIYESFKQVVPWRRRQEKLR 211

[Close]

BLAST of CmoCh16G000490 vs. TrEMBL
Match: A0A061G957_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015429 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.9e-38
Identity = 96/217 (44.24%), Postives = 132/217 (60.83%), Query Frame = 1


Query: 4   AKGENPSSTPPKLSLFSLPRQPPEPPGLVTPPLHASISVPFQWEEAPGKPRPFGMIE--- 63
           ++ E  +++ PKLSL+S P +  EP G+ TPP+H S+S+PFQWEEAPGKPRP    +   
Sbjct: 3   SEAECETTSTPKLSLYSFPSKAKEPSGMKTPPIHTSVSIPFQWEEAPGKPRPCPRTDTTS 62

Query: 64  PNSKPRSARSLDLPPRLFTDTKVAHFSSPTTAVDDPVVGQDLSSNLSFRFPDTW--AETA 123
             SKP+SAR L+LPPRL  + KVA+  SPTT +D P  G+ +S  LSFR   ++   +  
Sbjct: 63  TQSKPKSARCLELPPRLLAEAKVANMPSPTTVLDGPNAGRFVSYTLSFRKGGSFRIPDNN 122

Query: 124 TREGKHGKYVGSRRWMSFRKNKEVPKGASEIPRSAGGDKSGGRNAGSGDGETRVKITRFR 183
            R  K     GS RW SFRK   + +G+ +   +   D  GG   GS  G T+V ITR R
Sbjct: 123 KRLNKEKVIFGSSRWGSFRKAGRIVQGSFDFSSTPVVDGGGG---GSSGGGTQVNITRVR 182

Query: 184 SRRSLFRKSDSKSQLIASIYGSLKQVIPWRRKPDETR 216
            + SL   + ++S ++ASIY S KQV+PWRR   E +
Sbjct: 183 RKGSLLSLAQARSHVLASIYESFKQVVPWRRGAGENK 216

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BLAST of CmoCh16G000490 vs. TrEMBL
Match: A0A0B0PS77_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_11236 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.7e-36
Identity = 96/209 (45.93%), Postives = 128/209 (61.24%), Query Frame = 1


Query: 3   LAKGENPSSTPPKLSLFSLP-RQPPEPPGLVTPPLHASISVPFQWEEAPGKPRPFGMIEP 62
           +A+ E+ ++  PKL L+S P +   EPPG+ TPP+H S S+PFQWEEAPGKPR     E 
Sbjct: 4   VAEFESETTHTPKLLLYSFPSKAAEEPPGIATPPIHTSASIPFQWEEAPGKPRSCPAAES 63

Query: 63  NSKPRSARSLDLPPRLFTDTKVAHFSSPTTAVDDPVVGQDLSSNLSFRFPDTW-AETATR 122
             KP +AR L+LPPRL  + KVA+  SPTT +D P  G+ +S  LSFR   ++ +    R
Sbjct: 64  QPKPHTARCLELPPRLLAEAKVANMPSPTTVLDWPDSGRVVSRTLSFRKGGSFRSPDNKR 123

Query: 123 EGKHGKYVGSRRWMSFRKNKEVPKGASEIPRSAGGDKSGGRNAGSGDGETRVKITRFRSR 182
             K     GS RW SFRK   V +G+S    S+      GR+ G   G T+VKITR R +
Sbjct: 124 LSKEKVLFGSSRWGSFRKAGRVVQGSSF--DSSDPPMVNGRDGGGSGGGTQVKITRVRRK 183

Query: 183 RSLFRKSDSKSQLIASIYGSLKQVIPWRR 210
            SL   + ++S ++ASIY S KQV+PWRR
Sbjct: 184 GSLLSLTQARSHVLASIYESFKQVVPWRR 210

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BLAST of CmoCh16G000490 vs. TAIR10
Match: AT5G53030.1 (AT5G53030.1 unknown protein)

HSP 1 Score: 94.4 bits (233), Expect = 9.6e-20
Identity = 83/227 (36.56%), Postives = 109/227 (48.02%), Query Frame = 1


Query: 10  SSTPPKLSLFSLPRQP---PEPPGLVTPPLHASISVPFQWEEAPGKPRPFGMIEPNSKPR 69
           SST  +L LFS P         PGL TPP++ + SVPF WEEAPGKPR        ++  
Sbjct: 13  SSTRKQLPLFSYPMNNIAYETTPGLATPPVNIAGSVPFLWEEAPGKPRRVKKPARLNQKG 72

Query: 70  SARSLDLPPRLFT--DTKVAHFSSPTTAVDDPVVGQDLSSNLSFRFPDTWAETATREG-- 129
             RSL+LPPRL    ++   +  SPTT +D P    DL    S   P + A      G  
Sbjct: 73  VVRSLELPPRLVLPGESTTVNEPSPTTVLDGP---YDLRRR-SLSLPRSAAVIRKLRGVP 132

Query: 130 -----KHGKYV-GSRRWMSFRKNKEVPKGASEIPR------SAGGDKSGGRNAGSGDGET 189
                K  + V GS RW SF   KEV +G  +  R          D +GG   G+  G+ 
Sbjct: 133 APAPEKEERLVGGSSRWGSFGNCKEVSEGIFDFSRFRDDGYDCRRDWAGGGGVGNFAGDA 192

Query: 190 RVKITRFRSRRSLFR-----KSDSKSQLIASIYGSLKQVIPWRRKPD 213
           +VK+ R   + S F      KSD   ++ A +Y   KQVIPW+RK +
Sbjct: 193 KVKLYRIIKKGSFFNLSHTTKSDFWLKMQARVYEGFKQVIPWKRKQE 235

[Close]

BLAST of CmoCh16G000490 vs. TAIR10
Match: AT4G27810.1 (AT4G27810.1 unknown protein)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-19
Identity = 75/210 (35.71%), Postives = 98/210 (46.67%), Query Frame = 1


Query: 14  PKLSLFSLP-RQPPEPPGLVTPPLHASISVPFQWEEAPGKPRPFGMIEPNSKPRSARS-- 73
           PKL LFS+P  +  + PGL TPP++ + SVPF WEEAPGKPR     +P +  ++ R   
Sbjct: 15  PKLPLFSIPFNRACDTPGLATPPVNIAGSVPFLWEEAPGKPRVSDENKPLASKQNEREGG 74

Query: 74  -------LDLPPRLFTDTKVAHFSSPTTAVDDPVVGQDLSSNLSFRFPDTWAETATREGK 133
                  L+LPPRLF         SPTT +D P                           
Sbjct: 75  GGGVVRCLELPPRLFFPADDE--PSPTTVLDGP--------------------------- 134

Query: 134 HGKYVGSRRWMS-FRKNKEVPKGASEIPRSAGGDKSGGRNAGSGDGETRVKITRFRSRRS 193
              Y   RR +S  R+++   +G  E  RS             G G T VKI+R R + S
Sbjct: 135 ---YDVPRRSLSVIRRSERASEGRFEFSRSTNS------RCCDGGGGTTVKISRVRRKGS 186

Query: 194 LFRKSDSKSQLIASIYGSLKQVIPWRRKPD 213
           L   S SKSQ +A +Y   KQVIPWRR+ +
Sbjct: 195 LLNLSHSKSQFLARVYQGFKQVIPWRRRQE 186

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BLAST of CmoCh16G000490 vs. NCBI nr
Match: gi|659133646|ref|XP_008466837.1| (PREDICTED: uncharacterized protein LOC103504144 [Cucumis melo])

HSP 1 Score: 348.2 bits (892), Expect = 1.0e-92
Identity = 176/228 (77.19%), Postives = 189/228 (82.89%), Query Frame = 1


Query: 1   MRLAKGENPSSTPPKLSLFSLPRQPPEPPGLVTPPLHASISVPFQWEEAPGKPRPFGMIE 60
           MR   GENPSSTPPKLSLFSLPRQPPEPPG+VTPPLHASISVPFQWEEAPGKPRPFG+IE
Sbjct: 1   MRFVTGENPSSTPPKLSLFSLPRQPPEPPGMVTPPLHASISVPFQWEEAPGKPRPFGIIE 60

Query: 61  PNSKPRSARSLDLPPRLFTDTKVAHFSSPTTAVDDPVVGQDLSSNLSFRFPDTWAE---- 120
           PNSKP+SARSLDLPPRLF D KVAHF+SPTTAVD+P+ G+DLSS+LSFRFPDTWAE    
Sbjct: 61  PNSKPKSARSLDLPPRLFADAKVAHFASPTTAVDEPIFGRDLSSSLSFRFPDTWAETVRA 120

Query: 121 ------TATREGKHGKYVGSRRWMSFRKNKEVPKGASEIPRSAGGDKSGGRNAGSGDGET 180
                 T TREGK GKYVGSRRWMSFRKNKE+PK  SEI  + GGD    RN GS DGET
Sbjct: 121 TATATATGTREGKDGKYVGSRRWMSFRKNKEIPKSGSEIAVTGGGD----RNVGSSDGET 180

Query: 181 RVKITRFRSRRSLFRKSDSKSQLIASIYGSLKQVIPWRRKPDETRGVS 219
           RVKITRFRSRRS FRK +SKS  IA+IYGSLKQ I WRRK DE   +S
Sbjct: 181 RVKITRFRSRRSFFRKPNSKSHFIANIYGSLKQAISWRRKGDEMENIS 224

[Close]

BLAST of CmoCh16G000490 vs. NCBI nr
Match: gi|449456977|ref|XP_004146225.1| (PREDICTED: uncharacterized protein At4g00950-like [Cucumis sativus])

HSP 1 Score: 333.2 bits (853), Expect = 3.5e-88
Identity = 171/226 (75.66%), Postives = 187/226 (82.74%), Query Frame = 1


Query: 1   MRLAKGENPSSTPPKLSLFSLPRQPPEPPGLVTPPLHASISVPFQWEEAPGKPRPFGMIE 60
           MR   GENPSSTPPKLSLFSLPRQPPEPPG+VTPPLHASISVPFQWEEAPGKPRP G+IE
Sbjct: 1   MRFITGENPSSTPPKLSLFSLPRQPPEPPGMVTPPLHASISVPFQWEEAPGKPRPSGIIE 60

Query: 61  PNSKPRSARSLDLPPRLFTDTKVAHFSSPTTAVDDPVVGQDLSSNLSFRFPDTWAET--- 120
           PNSKPRSARSLDLPPRLF D KVAHF+SPTT VD+P+ G DLSS+LSFRFPDTWAET   
Sbjct: 61  PNSKPRSARSLDLPPRLFADAKVAHFASPTTGVDEPIFGPDLSSSLSFRFPDTWAETATA 120

Query: 121 ---ATREGKHGKYVGSRRWMSFRKNKE--VPKGASEIPRSAGGDKSGGRNAGSGDGETRV 180
              AT+E K+GK+VGSRRWMSFRKNK+  +PK   EI  + GGD    RN GS DGETRV
Sbjct: 121 TAAATKEEKNGKHVGSRRWMSFRKNKKIVIPKSGPEITVTGGGD----RNGGSSDGETRV 180

Query: 181 KITRFRSRRSLFRKSDSKSQLIASIYGSLKQVIPWRRKPDETRGVS 219
           KITRFRS+RS FRK +SKS  IA+IYGSLKQVI WRRK DE   +S
Sbjct: 181 KITRFRSKRSFFRKPNSKSHFIANIYGSLKQVISWRRKGDEMENIS 222

[Close]

BLAST of CmoCh16G000490 vs. NCBI nr
Match: gi|645258172|ref|XP_008234762.1| (PREDICTED: uncharacterized protein At4g00950 [Prunus mume])

HSP 1 Score: 177.6 bits (449), Expect = 2.4e-41
Identity = 105/205 (51.22%), Postives = 129/205 (62.93%), Query Frame = 1


Query: 14  PKLSLFSLPRQPPEPPGLVTPPLHASISVPFQWEEAPGKPRPFGMIEPNSKPRSARSLDL 73
           PKLSLFSLP QPPEPPG++TPPL  S+SVPFQWEEAPGKPR     E  SK + ARSL+L
Sbjct: 15  PKLSLFSLPNQPPEPPGMLTPPLQTSVSVPFQWEEAPGKPRHCSTTE--SKAKCARSLEL 74

Query: 74  PPRLFTDT-KVAHFSSPTTAVDDPVVGQDLSSNLSFRFPDTW-AETATREGKHGKYVGSR 133
           PPRL  +  K+ +  SPTT +D P VG+ LS +   R PD+  ++   +E   G   GS 
Sbjct: 75  PPRLLNEAAKITNMPSPTTVLDGPDVGRTLSFSFRVRNPDSLGSKRIGKESGRGGGFGSM 134

Query: 134 RWMSFRKNKEV-PKGASEIPRSAGGDKSGGRNAGSGDGETRVKITRFRSRRSLFRKSDSK 193
           RW SFRKNKEV   G  +   +AGG            GET+VKITR R R S    + +K
Sbjct: 135 RWGSFRKNKEVVDHGGFDFLPAAGGS----------GGETKVKITRVRRRDSFMSVTHTK 194

Query: 194 SQLIASIYGSLKQVIPWRRKPDETR 216
           S   ASIY S KQV+PWRR+ ++ R
Sbjct: 195 SHTWASIYESFKQVVPWRRRQEKLR 207

[Close]

BLAST of CmoCh16G000490 vs. NCBI nr
Match: gi|596022544|ref|XP_007219099.1| (hypothetical protein PRUPE_ppa015318mg [Prunus persica])

HSP 1 Score: 177.2 bits (448), Expect = 3.2e-41
Identity = 105/205 (51.22%), Postives = 129/205 (62.93%), Query Frame = 1


Query: 14  PKLSLFSLPRQPPEPPGLVTPPLHASISVPFQWEEAPGKPRPFGMIEPNSKPRSARSLDL 73
           PKLSLFSLP QPPEPPG++TPPL  S+SVPFQWEEAPGKPR     E  SK + ARSL+L
Sbjct: 15  PKLSLFSLPNQPPEPPGMLTPPLQTSVSVPFQWEEAPGKPRHCSTTE--SKAKCARSLEL 74

Query: 74  PPRLFTD-TKVAHFSSPTTAVDDPVVGQDLSSNLSFRFPDT-WAETATREGKHGKYVGSR 133
           PPRL  +  K  +  SPTT ++ P VG+ LS +   R PD+  ++   +E   G   GS 
Sbjct: 75  PPRLLNEAAKTTNMPSPTTVLEGPDVGRTLSFSFRVRSPDSLGSKRIGKESGRGGGFGSM 134

Query: 134 RWMSFRKNKE-VPKGASEIPRSAGGDKSGGRNAGSGDGETRVKITRFRSRRSLFRKSDSK 193
           +W SFRKNKE V  G  +    AGG   GG       GET+VKITR R R S    + +K
Sbjct: 135 KWGSFRKNKEVVDHGGFDFLPPAGGSGRGGA------GETKVKITRVRRRASFMSVTHTK 194

Query: 194 SQLIASIYGSLKQVIPWRRKPDETR 216
           S   ASIY S KQV+PWRR+ ++ R
Sbjct: 195 SHTWASIYESFKQVVPWRRRQEKLR 211

[Close]

BLAST of CmoCh16G000490 vs. NCBI nr
Match: gi|657969946|ref|XP_008376708.1| (PREDICTED: uncharacterized protein At4g00950-like [Malus domestica])

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-38
Identity = 102/218 (46.79%), Postives = 138/218 (63.30%), Query Frame = 1


Query: 10  SSTPPKLSLFSLPRQPPEPPGLVTPPLHASISVPFQWEEAPGKPRPFGMIEPNSKPRSAR 69
           +S  PKLSLFSLP Q PEPPG++TPPL  + SVPF+WEEAPGKPR  G     SKP+ AR
Sbjct: 5   ASITPKLSLFSLPSQRPEPPGILTPPLQTTASVPFKWEEAPGKPRDCGG-SAESKPKCAR 64

Query: 70  SLDLPPRLFTD-TKVAHFSSPTTAVDDPVVGQDLSSNLSFRFPDTW-AETATREGKH--- 129
           SL+LPPRL ++  K+ +  SPTT +D P VG+ +S + +   PD + ++  ++E      
Sbjct: 65  SLELPPRLLSEAAKITNTPSPTTVLDGPDVGRTMSFSFTDGSPDAFGSKRLSKESCRSVG 124

Query: 130 GKYVGSRRWMSFRKNKEVPK--GASEIPRSAGGDKSGGRNAGSGDGETRVKITRFRSRRS 189
           G   GS RW SFRKNKEV    G   +P ++GG            GET+VK+TR R R S
Sbjct: 125 GGGFGSMRWASFRKNKEVVDHGGFDSLPPASGG------------GETKVKVTRVRRRAS 184

Query: 190 LFRKSDSKSQLIASIYGSLKQV--IPWRRKPDETRGVS 219
               S+++S + ASIY SLKQV  +PWRR+ ++ R ++
Sbjct: 185 FLNASNTRSSMWASIYKSLKQVVPVPWRRRQEKLRNMA 209

The following BLAST results are available for this feature:

BLAST of CmoCh16G000490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh16G000490 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBA5_CUCME	7.3e-93	77.19	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LC85_CUCSA	2.4e-88	75.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239250 PE=4 SV=1	[more]
M5XFL1_PRUPE	2.2e-41	51.22	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015318mg PE=4 SV=1	[more]
A0A061G957_THECC	3.9e-38	44.24	Uncharacterized protein OS=Theobroma cacao GN=TCM_015429 PE=4 SV=1	[more]
A0A0B0PS77_GOSAR	3.7e-36	45.93	Uncharacterized protein OS=Gossypium arboreum GN=F383_11236 PE=4 SV=1	[more]

BLAST of CmoCh16G000490 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G53030.1	9.6e-20	36.56	unknown protein	[more]
AT4G27810.1	1.2e-19	35.71	unknown protein	[more]

BLAST of CmoCh16G000490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659133646\|ref\|XP_008466837.1\|	1.0e-92	77.19	PREDICTED: uncharacterized protein LOC103504144 [Cucumis melo]	[more]
gi\|449456977\|ref\|XP_004146225.1\|	3.5e-88	75.66	PREDICTED: uncharacterized protein At4g00950-like [Cucumis sativus]	[more]
gi\|645258172\|ref\|XP_008234762.1\|	2.4e-41	51.22	PREDICTED: uncharacterized protein At4g00950 [Prunus mume]	[more]
gi\|596022544\|ref\|XP_007219099.1\|	3.2e-41	51.22	hypothetical protein PRUPE_ppa015318mg [Prunus persica]	[more]
gi\|657969946\|ref\|XP_008376708.1\|	1.1e-38	46.79	PREDICTED: uncharacterized protein At4g00950-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005655	nucleolar ribonuclease P complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G000490.1	CmoCh16G000490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34371	FAMILY NOT NAMED	coord: 14..210 score: 8.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G000490	Cucsa.032220	Cucumber (Gy14) v1	cgycmoB0007
CmoCh16G000490	CmaCh18G013280	Cucurbita maxima (Rimu)	cmacmoB404
CmoCh16G000490	CmaCh16G000410	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G000490	Cla004262	Watermelon (97103) v1	cmowmB310
CmoCh16G000490	Csa3G239250	Cucumber (Chinese Long) v2	cmocuB310
CmoCh16G000490	MELO3C008501	Melon (DHL92) v3.5.1	cmomeB289
CmoCh16G000490	ClCG05G008990	Watermelon (Charleston Gray)	cmowcgB290
CmoCh16G000490	CSPI03G19740	Wild cucumber (PI 183967)	cmocpiB318
CmoCh16G000490	Lsi05G001080	Bottle gourd (USVL1VR-Ls)	cmolsiB307
CmoCh16G000490	Lsi09G000190	Bottle gourd (USVL1VR-Ls)	cmolsiB286
CmoCh16G000490	Cp4.1LG14g06780	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G000490	Cp4.1LG09g00210	Cucurbita pepo (Zucchini)	cmocpeB303
CmoCh16G000490	MELO3C008501.2	Melon (DHL92) v3.6.1	cmomedB334
CmoCh16G000490	CsaV3_3G019790	Cucumber (Chinese Long) v3	cmocucB0373
CmoCh16G000490	CsaV3_3G007960	Cucumber (Chinese Long) v3	cmocucB0374
CmoCh16G000490	CsaV3_5G000440	Cucumber (Chinese Long) v3	cmocucB0398
CmoCh16G000490	Cla97C01G000440	Watermelon (97103) v2	cmowmbB307
CmoCh16G000490	Cla97C05G091300	Watermelon (97103) v2	cmowmbB331
CmoCh16G000490	Bhi01G001121	Wax gourd	cmowgoB0435
CmoCh16G000490	CsGy3G019660	Cucumber (Gy14) v2	cgybcmoB304
CmoCh16G000490	Carg20329	Silver-seed gourd	carcmoB0731

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh16G000490	CmoCh18G013570	Cucurbita moschata (Rifu)	cmocmoB274

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G000490	Silver-seed gourd	carcmoB0692
CmoCh16G000490	Silver-seed gourd	carcmoB0730
CmoCh16G000490	Silver-seed gourd	carcmoB1326
CmoCh16G000490	Wax gourd	cmowgoB0424
CmoCh16G000490	Cucurbita moschata (Rifu)	cmocmoB236
CmoCh16G000490	Cucurbita moschata (Rifu)	cmocmoB275
CmoCh16G000490	Cucurbita moschata (Rifu)	cmocmoB281
CmoCh16G000490	Cucumber (Gy14) v1	cgycmoB0601
CmoCh16G000490	Cucurbita maxima (Rimu)	cmacmoB289
CmoCh16G000490	Cucurbita maxima (Rimu)	cmacmoB405
CmoCh16G000490	Cucurbita maxima (Rimu)	cmacmoB587
CmoCh16G000490	Wild cucumber (PI 183967)	cmocpiB337
CmoCh16G000490	Cucumber (Chinese Long) v2	cmocuB329
CmoCh16G000490	Melon (DHL92) v3.5.1	cmomeB275
CmoCh16G000490	Watermelon (Charleston Gray)	cmowcgB282
CmoCh16G000490	Watermelon (97103) v1	cmowmB312
CmoCh16G000490	Cucurbita pepo (Zucchini)	cmocpeB304
CmoCh16G000490	Cucurbita pepo (Zucchini)	cmocpeB306
CmoCh16G000490	Cucurbita pepo (Zucchini)	cmocpeB322
CmoCh16G000490	Cucumber (Gy14) v2	cgybcmoB594
CmoCh16G000490	Melon (DHL92) v3.6.1	cmomedB312