CmoCh16G000020 (gene) Cucurbita moschata (Rifu)

NameCmoCh16G000020
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionF-box SKIP31-like protein
LocationCmo_Chr16 : 35050 .. 35487 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTAAATGGGAAATCCATGGTGTCAGAGGCTGCAAATGTTATTTATCTTTCAACTATTGTGGGTGGAGATGGGGAAGTAGTTGGTCACAAATGTGATTGGAAATGTGAGAATGAGCATGTGTGTGGTAATATGTATCGCTGCAAACTGACAGGAATGACTCACATTTGTGACAAAAACTGTGACCAACGAATTGTATATGATAACCATACCTCACTCTGCCGTGCAAGTGGGCAGGTTTTCCCGCTTACACTCACAGAGGAACAAGCAATCAGAGGCATTCGCAGGAAGCTTGATGCTGACAATTCCTCCGTTGATGACTTTGGTTTCAAGCGTAGGCGGGATGCCCAGTTTCATCCTTCTCCTTTTGAGAGATCTTTCTCTGCTGCCCTCCCATTTTGTAGTCGAGTTGGAGACGGCATGGATATGAACTAG

mRNA sequence

ATGGAGTTAAATGGGAAATCCATGGTGTCAGAGGCTGCAAATGTTATTTATCTTTCAACTATTGTGGGTGGAGATGGGGAAGTAGTTGGTCACAAATGTGATTGGAAATGTGAGAATGAGCATGTGTGTGGTAATATGTATCGCTGCAAACTGACAGGAATGACTCACATTTGTGACAAAAACTGTGACCAACGAATTGTATATGATAACCATACCTCACTCTGCCGTGCAAGTGGGCAGGTTTTCCCGCTTACACTCACAGAGGAACAAGCAATCAGAGGCATTCGCAGGAAGCTTGATGCTGACAATTCCTCCGTTGATGACTTTGGTTTCAAGCGTAGGCGGGATGCCCAGTTTCATCCTTCTCCTTTTGAGAGATCTTTCTCTGCTGCCCTCCCATTTTGTAGTCGAGTTGGAGACGGCATGGATATGAACTAG

Coding sequence (CDS)

ATGGAGTTAAATGGGAAATCCATGGTGTCAGAGGCTGCAAATGTTATTTATCTTTCAACTATTGTGGGTGGAGATGGGGAAGTAGTTGGTCACAAATGTGATTGGAAATGTGAGAATGAGCATGTGTGTGGTAATATGTATCGCTGCAAACTGACAGGAATGACTCACATTTGTGACAAAAACTGTGACCAACGAATTGTATATGATAACCATACCTCACTCTGCCGTGCAAGTGGGCAGGTTTTCCCGCTTACACTCACAGAGGAACAAGCAATCAGAGGCATTCGCAGGAAGCTTGATGCTGACAATTCCTCCGTTGATGACTTTGGTTTCAAGCGTAGGCGGGATGCCCAGTTTCATCCTTCTCCTTTTGAGAGATCTTTCTCTGCTGCCCTCCCATTTTGTAGTCGAGTTGGAGACGGCATGGATATGAACTAG
BLAST of CmoCh16G000020 vs. TrEMBL
Match: A0A0A0KZD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G114230 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 5.5e-73
Identity = 128/145 (88.28%), Postives = 138/145 (95.17%), Query Frame = 1

Query: 1   MELNGKSMVSEAANVIYLSTIVGGDGEVVGHKCDWKCENEHVCGNMYRCKLTGMTHICDK 60
           MELNGKSMVSE ANVIYLSTI+G DG+V+ HKCDWKCENEHVCGNMYRCK TGMTHICDK
Sbjct: 1   MELNGKSMVSEPANVIYLSTILGRDGQVLAHKCDWKCENEHVCGNMYRCKFTGMTHICDK 60

Query: 61  NCDQRIVYDNHTSLCRASGQVFPLTLTEEQAIRGIRRKLDADNSSVDDFGFKRRRDAQFH 120
           NCDQRI+YDNH+SLCRASGQ+FPL+LTEE AIRGIRRKLDADNSSVDDF FKRRRDAQFH
Sbjct: 61  NCDQRILYDNHSSLCRASGQIFPLSLTEEHAIRGIRRKLDADNSSVDDFAFKRRRDAQFH 120

Query: 121 PSPFERSFSAALPFCSRVGDGMDMN 146
           PSPFERSFSAA+P CS+VGDGMDM+
Sbjct: 121 PSPFERSFSAAVPICSQVGDGMDMS 145

BLAST of CmoCh16G000020 vs. TrEMBL
Match: A0A067JZ13_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25174 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.8e-63
Identity = 113/145 (77.93%), Postives = 126/145 (86.90%), Query Frame = 1

Query: 1   MELNGKSMVSEAANVIYLSTIVGGDGEVVGHKCDWKCENEHVCGNMYRCKLTGMTHICDK 60
           ME+ GKSMVS  ANVIYLSTI+G DG +  HKCDWKCENEHVCGNMYRCKLTG+THICDK
Sbjct: 53  MEVYGKSMVSGPANVIYLSTILGRDGPIPVHKCDWKCENEHVCGNMYRCKLTGLTHICDK 112

Query: 61  NCDQRIVYDNHTSLCRASGQVFPLTLTEEQAIRGIRRKLDADNSSVDDFGFKRRRDAQFH 120
           NC+QRI+YDNH SLCRASGQ+FPL+  EEQA+RG+RRK+DAD+S  D   FKRRRDAQ H
Sbjct: 113 NCNQRILYDNHNSLCRASGQIFPLSPAEEQAVRGVRRKIDADSSPTDSCAFKRRRDAQLH 172

Query: 121 PSPFERSFSAALPFCSRVGDGMDMN 146
           PSPFERSFSA  P CS+VGDGMDMN
Sbjct: 173 PSPFERSFSAVGPICSQVGDGMDMN 197

BLAST of CmoCh16G000020 vs. TrEMBL
Match: B9S0V3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1537780 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.8e-63
Identity = 111/145 (76.55%), Postives = 128/145 (88.28%), Query Frame = 1

Query: 1   MELNGKSMVSEAANVIYLSTIVGGDGEVVGHKCDWKCENEHVCGNMYRCKLTGMTHICDK 60
           ME+ GKSMVS  ANVI+LS I+G DG V  HKCDWKC+NEHVCGNMYRCKLTG+THICDK
Sbjct: 1   MEIYGKSMVSGHANVIFLSVILGRDGPVSVHKCDWKCQNEHVCGNMYRCKLTGLTHICDK 60

Query: 61  NCDQRIVYDNHTSLCRASGQVFPLTLTEEQAIRGIRRKLDADNSSVDDFGFKRRRDAQFH 120
           NC+QRI+YDNH+SLCRASGQ+FPL+  EEQA+RG+RRK+DADNS  ++  FKRRRDAQFH
Sbjct: 61  NCNQRILYDNHSSLCRASGQIFPLSPAEEQAVRGVRRKIDADNSPTENCSFKRRRDAQFH 120

Query: 121 PSPFERSFSAALPFCSRVGDGMDMN 146
           PSPFERSFSA  P CS+VGDGMDM+
Sbjct: 121 PSPFERSFSAVSPICSQVGDGMDMS 145

BLAST of CmoCh16G000020 vs. TrEMBL
Match: T2DQ29_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 8.8e-63
Identity = 111/145 (76.55%), Postives = 128/145 (88.28%), Query Frame = 1

Query: 1   MELNGKSMVSEAANVIYLSTIVGGDGEVVGHKCDWKCENEHVCGNMYRCKLTGMTHICDK 60
           ME+ GKSMV+  +NVIYLS+I+G DG V  H+C+WKCENEHVCGNMYRCKLTG+THICDK
Sbjct: 1   MEVYGKSMVAAPSNVIYLSSILGQDGPVPCHRCNWKCENEHVCGNMYRCKLTGLTHICDK 60

Query: 61  NCDQRIVYDNHTSLCRASGQVFPLTLTEEQAIRGIRRKLDADNSSVDDFGFKRRRDAQFH 120
           NC+QRI+YDNH+SLC ASGQ+FPLT  EEQA+RG+RRKLDA+NS  D  GFKRRRDAQFH
Sbjct: 61  NCNQRILYDNHSSLCLASGQIFPLTPAEEQAVRGVRRKLDAENSPSDSCGFKRRRDAQFH 120

Query: 121 PSPFERSFSAALPFCSRVGDGMDMN 146
           PSPFERSF+A  P CS+VGDGMDMN
Sbjct: 121 PSPFERSFTAVSPICSQVGDGMDMN 145

BLAST of CmoCh16G000020 vs. TrEMBL
Match: A0A151U0G4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_005366 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.5e-62
Identity = 110/145 (75.86%), Postives = 127/145 (87.59%), Query Frame = 1

Query: 1   MELNGKSMVSEAANVIYLSTIVGGDGEVVGHKCDWKCENEHVCGNMYRCKLTGMTHICDK 60
           ME+ GKSMV+  +NVIYLS+I+G DG + GH+C+WKCENEHVCGNMYRCKLTG+THICDK
Sbjct: 1   MEVYGKSMVAAPSNVIYLSSILGQDGPIPGHRCNWKCENEHVCGNMYRCKLTGLTHICDK 60

Query: 61  NCDQRIVYDNHTSLCRASGQVFPLTLTEEQAIRGIRRKLDADNSSVDDFGFKRRRDAQFH 120
           NC+QRI+YDNH+SLC ASGQ+FPLT  EEQA+RG+RRKLDA+ S  D  GFKRRRDAQFH
Sbjct: 61  NCNQRILYDNHSSLCLASGQIFPLTPAEEQAVRGVRRKLDAETSPSDGCGFKRRRDAQFH 120

Query: 121 PSPFERSFSAALPFCSRVGDGMDMN 146
           PSPFERSFSA  P CS+VGDGMD N
Sbjct: 121 PSPFERSFSAVSPICSQVGDGMDTN 145

BLAST of CmoCh16G000020 vs. TAIR10
Match: AT5G24610.1 (AT5G24610.1 unknown protein)

HSP 1 Score: 209.5 bits (532), Expect = 1.4e-54
Identity = 100/147 (68.03%), Postives = 122/147 (82.99%), Query Frame = 1

Query: 1   MELNGKS-MVSEAANVIYLSTIVGGDGEVVGHKCDWKCENEHVCGNMYRCKLTGMTHICD 60
           ME+ GKS MV  +ANVIYLS I+G D +  GHKCDWKCENE+VCGNMYRCKLTG+TH+CD
Sbjct: 1   MEVFGKSPMVVTSANVIYLSAILGRDCD--GHKCDWKCENENVCGNMYRCKLTGLTHVCD 60

Query: 61  KNCDQRIVYDNHTSLCRASGQVFPLTLTEEQAIRGIRRKLD-ADNSSVDDFGFK-RRRDA 120
           KNC+QRI+YDNH+SLCRASG++FPL+  EEQA++G+RRKLD A++   +   FK RRRDA
Sbjct: 61  KNCNQRILYDNHSSLCRASGRIFPLSSVEEQAVKGVRRKLDAAESHPSESCSFKRRRRDA 120

Query: 121 QFHPSPFERSFSAALPFCSRVGDGMDM 145
           QFH SPFERSF+A  P CS  GDGM++
Sbjct: 121 QFHASPFERSFTAVSPICSPAGDGMEL 145

BLAST of CmoCh16G000020 vs. TAIR10
Match: AT3G49550.1 (AT3G49550.1 unknown protein)

HSP 1 Score: 205.7 bits (522), Expect = 2.0e-53
Identity = 98/149 (65.77%), Postives = 122/149 (81.88%), Query Frame = 1

Query: 1   MELNGKS-MVSEAANVIYLSTIVGGDGEVVGHKCDWKCENEHVCGNMYRCKLTGMTHICD 60
           ME+ GKS +V  +ANVIYLS I+G +G    HKCDWKCENE+VCGNMYRCKLTG+TH+CD
Sbjct: 1   MEVFGKSHVVVGSANVIYLSAILGHEGP--NHKCDWKCENENVCGNMYRCKLTGLTHVCD 60

Query: 61  KNCDQRIVYDNHTSLCRASGQVFPLTLTEEQAIRGIRRKLDADNSS--VDDFGFKRRRDA 120
           KNC+QRI+YDNH SLCRASG++FPL+L EEQA++G+RRKLD ++     +    +RRRDA
Sbjct: 61  KNCNQRILYDNHNSLCRASGRIFPLSLVEEQAVKGVRRKLDDESQQQPSESCVKRRRRDA 120

Query: 121 QFHPSPFERSFSAALPFCSRV-GDGMDMN 146
           QFH SPFERSF+A  PFCS+  GDGM++N
Sbjct: 121 QFHSSPFERSFAAVSPFCSQAGGDGMEIN 147

BLAST of CmoCh16G000020 vs. NCBI nr
Match: gi|778692038|ref|XP_011653395.1| (PREDICTED: uncharacterized protein LOC101211813 [Cucumis sativus])

HSP 1 Score: 281.6 bits (719), Expect = 7.9e-73
Identity = 128/145 (88.28%), Postives = 138/145 (95.17%), Query Frame = 1

Query: 1   MELNGKSMVSEAANVIYLSTIVGGDGEVVGHKCDWKCENEHVCGNMYRCKLTGMTHICDK 60
           MELNGKSMVSE ANVIYLSTI+G DG+V+ HKCDWKCENEHVCGNMYRCK TGMTHICDK
Sbjct: 1   MELNGKSMVSEPANVIYLSTILGRDGQVLAHKCDWKCENEHVCGNMYRCKFTGMTHICDK 60

Query: 61  NCDQRIVYDNHTSLCRASGQVFPLTLTEEQAIRGIRRKLDADNSSVDDFGFKRRRDAQFH 120
           NCDQRI+YDNH+SLCRASGQ+FPL+LTEE AIRGIRRKLDADNSSVDDF FKRRRDAQFH
Sbjct: 61  NCDQRILYDNHSSLCRASGQIFPLSLTEEHAIRGIRRKLDADNSSVDDFAFKRRRDAQFH 120

Query: 121 PSPFERSFSAALPFCSRVGDGMDMN 146
           PSPFERSFSAA+P CS+VGDGMDM+
Sbjct: 121 PSPFERSFSAAVPICSQVGDGMDMS 145

BLAST of CmoCh16G000020 vs. NCBI nr
Match: gi|659125861|ref|XP_008462894.1| (PREDICTED: uncharacterized protein LOC103501167 [Cucumis melo])

HSP 1 Score: 280.0 bits (715), Expect = 2.3e-72
Identity = 127/145 (87.59%), Postives = 137/145 (94.48%), Query Frame = 1

Query: 1   MELNGKSMVSEAANVIYLSTIVGGDGEVVGHKCDWKCENEHVCGNMYRCKLTGMTHICDK 60
           MELNGKSMVSE ANVIYLSTI+G DG+V+ HKCDWKCENEHVCGNMYRCK TGMTHICDK
Sbjct: 1   MELNGKSMVSEPANVIYLSTILGRDGQVLSHKCDWKCENEHVCGNMYRCKFTGMTHICDK 60

Query: 61  NCDQRIVYDNHTSLCRASGQVFPLTLTEEQAIRGIRRKLDADNSSVDDFGFKRRRDAQFH 120
           NCDQRI+YDNH+SLCRASGQ+FPL+LTEE AIRGIRRK DADNSSVDDF FKRRRDAQFH
Sbjct: 61  NCDQRILYDNHSSLCRASGQIFPLSLTEEHAIRGIRRKFDADNSSVDDFAFKRRRDAQFH 120

Query: 121 PSPFERSFSAALPFCSRVGDGMDMN 146
           PSPFERSFSAA+P CS+VGDGMDM+
Sbjct: 121 PSPFERSFSAAVPICSQVGDGMDMS 145

BLAST of CmoCh16G000020 vs. NCBI nr
Match: gi|643710834|gb|KDP24774.1| (hypothetical protein JCGZ_25174 [Jatropha curcas])

HSP 1 Score: 250.0 bits (637), Expect = 2.6e-63
Identity = 113/145 (77.93%), Postives = 126/145 (86.90%), Query Frame = 1

Query: 1   MELNGKSMVSEAANVIYLSTIVGGDGEVVGHKCDWKCENEHVCGNMYRCKLTGMTHICDK 60
           ME+ GKSMVS  ANVIYLSTI+G DG +  HKCDWKCENEHVCGNMYRCKLTG+THICDK
Sbjct: 53  MEVYGKSMVSGPANVIYLSTILGRDGPIPVHKCDWKCENEHVCGNMYRCKLTGLTHICDK 112

Query: 61  NCDQRIVYDNHTSLCRASGQVFPLTLTEEQAIRGIRRKLDADNSSVDDFGFKRRRDAQFH 120
           NC+QRI+YDNH SLCRASGQ+FPL+  EEQA+RG+RRK+DAD+S  D   FKRRRDAQ H
Sbjct: 113 NCNQRILYDNHNSLCRASGQIFPLSPAEEQAVRGVRRKIDADSSPTDSCAFKRRRDAQLH 172

Query: 121 PSPFERSFSAALPFCSRVGDGMDMN 146
           PSPFERSFSA  P CS+VGDGMDMN
Sbjct: 173 PSPFERSFSAVGPICSQVGDGMDMN 197

BLAST of CmoCh16G000020 vs. NCBI nr
Match: gi|802749783|ref|XP_012087653.1| (PREDICTED: uncharacterized protein LOC105646407 [Jatropha curcas])

HSP 1 Score: 250.0 bits (637), Expect = 2.6e-63
Identity = 113/145 (77.93%), Postives = 126/145 (86.90%), Query Frame = 1

Query: 1   MELNGKSMVSEAANVIYLSTIVGGDGEVVGHKCDWKCENEHVCGNMYRCKLTGMTHICDK 60
           ME+ GKSMVS  ANVIYLSTI+G DG +  HKCDWKCENEHVCGNMYRCKLTG+THICDK
Sbjct: 1   MEVYGKSMVSGPANVIYLSTILGRDGPIPVHKCDWKCENEHVCGNMYRCKLTGLTHICDK 60

Query: 61  NCDQRIVYDNHTSLCRASGQVFPLTLTEEQAIRGIRRKLDADNSSVDDFGFKRRRDAQFH 120
           NC+QRI+YDNH SLCRASGQ+FPL+  EEQA+RG+RRK+DAD+S  D   FKRRRDAQ H
Sbjct: 61  NCNQRILYDNHNSLCRASGQIFPLSPAEEQAVRGVRRKIDADSSPTDSCAFKRRRDAQLH 120

Query: 121 PSPFERSFSAALPFCSRVGDGMDMN 146
           PSPFERSFSA  P CS+VGDGMDMN
Sbjct: 121 PSPFERSFSAVGPICSQVGDGMDMN 145

BLAST of CmoCh16G000020 vs. NCBI nr
Match: gi|1000965649|ref|XP_015574934.1| (PREDICTED: uncharacterized protein LOC8262254 [Ricinus communis])

HSP 1 Score: 248.1 bits (632), Expect = 9.7e-63
Identity = 111/145 (76.55%), Postives = 128/145 (88.28%), Query Frame = 1

Query: 1   MELNGKSMVSEAANVIYLSTIVGGDGEVVGHKCDWKCENEHVCGNMYRCKLTGMTHICDK 60
           ME+ GKSMVS  ANVI+LS I+G DG V  HKCDWKC+NEHVCGNMYRCKLTG+THICDK
Sbjct: 1   MEIYGKSMVSGHANVIFLSVILGRDGPVSVHKCDWKCQNEHVCGNMYRCKLTGLTHICDK 60

Query: 61  NCDQRIVYDNHTSLCRASGQVFPLTLTEEQAIRGIRRKLDADNSSVDDFGFKRRRDAQFH 120
           NC+QRI+YDNH+SLCRASGQ+FPL+  EEQA+RG+RRK+DADNS  ++  FKRRRDAQFH
Sbjct: 61  NCNQRILYDNHSSLCRASGQIFPLSPAEEQAVRGVRRKIDADNSPTENCSFKRRRDAQFH 120

Query: 121 PSPFERSFSAALPFCSRVGDGMDMN 146
           PSPFERSFSA  P CS+VGDGMDM+
Sbjct: 121 PSPFERSFSAVSPICSQVGDGMDMS 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KZD2_CUCSA5.5e-7388.28Uncharacterized protein OS=Cucumis sativus GN=Csa_4G114230 PE=4 SV=1[more]
A0A067JZ13_JATCU1.8e-6377.93Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25174 PE=4 SV=1[more]
B9S0V3_RICCO6.8e-6376.55Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1537780 PE=4 SV=1[more]
T2DQ29_PHAVU8.8e-6376.55Uncharacterized protein OS=Phaseolus vulgaris PE=2 SV=1[more]
A0A151U0G4_CAJCA1.5e-6275.86Uncharacterized protein OS=Cajanus cajan GN=KK1_005366 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G24610.11.4e-5468.03 unknown protein[more]
AT3G49550.12.0e-5365.77 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778692038|ref|XP_011653395.1|7.9e-7388.28PREDICTED: uncharacterized protein LOC101211813 [Cucumis sativus][more]
gi|659125861|ref|XP_008462894.1|2.3e-7287.59PREDICTED: uncharacterized protein LOC103501167 [Cucumis melo][more]
gi|643710834|gb|KDP24774.1|2.6e-6377.93hypothetical protein JCGZ_25174 [Jatropha curcas][more]
gi|802749783|ref|XP_012087653.1|2.6e-6377.93PREDICTED: uncharacterized protein LOC105646407 [Jatropha curcas][more]
gi|1000965649|ref|XP_015574934.1|9.7e-6376.55PREDICTED: uncharacterized protein LOC8262254 [Ricinus communis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G000020.1CmoCh16G000020.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36372FAMILY NOT NAMEDcoord: 2..145
score: 2.7

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh16G000020CmoCh18G013850Cucurbita moschata (Rifu)cmocmoB275
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G000020Silver-seed gourdcarcmoB1326
CmoCh16G000020Cucurbita maxima (Rimu)cmacmoB322