CmoCh15G014500 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G014500
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDeoxyribodipyrimidine photolyase
LocationCmo_Chr15 : 9841248 .. 9841671 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAAATATCTGAGGAGCCTCAACTTCCACAGCCACAAACTCTCTGGAAAACCGATCTTTGTCCTTCATCTCCATTTCCATGTCCATCTTCACCTTCTCCCCTTCTCCTTCTCTTTCCTTCTTCACTCCTCCAACTCCTCCCCGTCGTTCTTCTGCATTTCCGGCGGCAACGCAATCCTCTGCCAATCTCAACACCGTAGCCGGAGGACTCGCCCTTCTTTGGTTCAAACATGACCTCCGAATCGACGATCATCCTGCTCTCCATGCCGCCGCCTCCCAGTTTCCCGCTCTCATCCCTCTTTACATCTTCGATTCCCGCTTACTTTCGCGTAACTTCTCTTTCTCTCTATTCTGCTTGTGGATTTAATGGCAATGTGGATACTAATGGAAGTTGTTTGTCTGTATAGTGTCTGCCATTAGATGA

mRNA sequence

CAAAAATATCTGAGGAGCCTCAACTTCCACAGCCACAAACTCTCTGGAAAACCGATCTTTGTCCTTCATCTCCATTTCCATGTCCATCTTCACCTTCTCCCCTTCTCCTTCTCTTTCCTTCTTCACTCCTCCAACTCCTCCCCGTCGTTCTTCTGCATTTCCGGCGGCAACGCAATCCTCTGCCAATCTCAACACCGTAGCCGGAGGACTCGCCCTTCTTTGGTTCAAACATGACCTCCGAATCGACGATCATCCTGCTCTCCATGCCGCCGCCTCCCAGTTTCCCGCTCTCATCCCTCTTTACATCTTCGATTCCCGCTTACTTTCGCTGTCTGCCATTAGATGA

Coding sequence (CDS)

ATGTCCATCTTCACCTTCTCCCCTTCTCCTTCTCTTTCCTTCTTCACTCCTCCAACTCCTCCCCGTCGTTCTTCTGCATTTCCGGCGGCAACGCAATCCTCTGCCAATCTCAACACCGTAGCCGGAGGACTCGCCCTTCTTTGGTTCAAACATGACCTCCGAATCGACGATCATCCTGCTCTCCATGCCGCCGCCTCCCAGTTTCCCGCTCTCATCCCTCTTTACATCTTCGATTCCCGCTTACTTTCGCTGTCTGCCATTAGATGA
Homology
[Close]
BLAST of CmoCh15G014500 vs. TrEMBL
Match: A0A0A0KNA5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171170 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-20
Identity = 57/83 (68.67%), Postives = 62/83 (74.70%), Query Frame = 1 

Query: 1  MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPA 60
          MSIF FSPS    F  PP P RRSS FP  T SS N   + G LA+LWFKHDLRI DHPA
Sbjct: 1  MSIFNFSPSCFSCFSPPPPPRRRSSHFPVTTHSSPN--PITGPLAVLWFKHDLRIHDHPA 60

Query: 61 LHAAASQFPALIPLYIFDSRLLS 84
          LHAA+SQF +LIPLYIFDSR+LS
Sbjct: 61 LHAASSQFSSLIPLYIFDSRILS 81

[Close]
BLAST of CmoCh15G014500 vs. TrEMBL
Match: F6HAR5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g01340 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.2e-11
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 1 

Query: 4  FTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHA 63
          F+FSP+ +LSF  P       S FP A    A  + +   +A+LWFKHDLRIDDHP L A
Sbjct: 12 FSFSPN-TLSFGRP------RSRFPLAASKGAESSAIDDSVAVLWFKHDLRIDDHPGLVA 71

Query: 64 AASQFPALIPLYIFDSRLLS 84
          AAS+   +IPLY+FD R+LS
Sbjct: 72 AASRHRTVIPLYVFDRRILS 84

[Close]
BLAST of CmoCh15G014500 vs. TrEMBL
Match: A5C431_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024326 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.0e-10
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1 

Query: 25  SAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS 84
           S FP A    A  + +   +A+LWFKHDLRIDDHP L AAAS+   +IPLY+FD R+LS
Sbjct: 936 SRFPLAASKGAESSAIDDSVAVLWFKHDLRIDDHPGLVAAASRHRTVIPLYVFDRRILS 994

[Close]
BLAST of CmoCh15G014500 vs. TrEMBL
Match: A0A151TLK3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_021530 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.0e-10
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 1 

Query: 1  MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPA 60
          M++ TF   PSLS F    P  RS +     ++    +  A G A+LWFKHDLR DDHPA
Sbjct: 1  MALLTFPHFPSLSSF----PSTRSFS-----RTRRYCSMKATGTAILWFKHDLRTDDHPA 60

Query: 61 LHAAASQFPALIPLYIFDSRLLS 84
          L AA+S F +L+PLY+FD R+LS
Sbjct: 61 LLAASSTFRSLLPLYVFDRRILS 74

[Close]
BLAST of CmoCh15G014500 vs. TrEMBL
Match: A0A061FZF4_THECC (Hydrolase, putative isoform 2 OS=Theobroma cacao GN=TCM_014959 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-09
Identity = 38/76 (50.00%), Postives = 45/76 (59.21%), Query Frame = 1 

Query: 8  PSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQ 67
          P P   FF+P   PR S         SA       G A+LWFKHDLR+DDHPAL AAA  
Sbjct: 13 PFPPFYFFSPRPTPRPSFI----CSLSAGAGRTKSGSAILWFKHDLRLDDHPALVAAAET 72

Query: 68 FPALIPLYIFDSRLLS 84
            +L+PLY+FD R+LS
Sbjct: 73 HRSLLPLYVFDHRILS 84

[Close]
BLAST of CmoCh15G014500 vs. TAIR10
Match: AT4G25290.1 (AT4G25290.1 DNA photolyases;DNA photolyases)

HSP 1 Score: 58.2 bits (139), Expect = 3.1e-09
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1 

Query: 39 TVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS 84
          T  G  A++WFKHDLR+DDHP L  AAS+  A+IPLY+ D R+LS
Sbjct: 31 TNEGSTAVVWFKHDLRVDDHPGL-LAASKHRAVIPLYVLDRRILS 74

[Close]
BLAST of CmoCh15G014500 vs. NCBI nr
Match: gi|449451936|ref|XP_004143716.1| (PREDICTED: uncharacterized protein LOC101210685 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-20
Identity = 57/83 (68.67%), Postives = 62/83 (74.70%), Query Frame = 1 

Query: 1  MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPA 60
          MSIF FSPS    F  PP P RRSS FP  T SS N   + G LA+LWFKHDLRI DHPA
Sbjct: 1  MSIFNFSPSCFSCFSPPPPPRRRSSHFPVTTHSSPN--PITGPLAVLWFKHDLRIHDHPA 60

Query: 61 LHAAASQFPALIPLYIFDSRLLS 84
          LHAA+SQF +LIPLYIFDSR+LS
Sbjct: 61 LHAASSQFSSLIPLYIFDSRILS 81

[Close]
BLAST of CmoCh15G014500 vs. NCBI nr
Match: gi|659074619|ref|XP_008437702.1| (PREDICTED: uncharacterized protein LOC103483047, partial [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 3.4e-18
Identity = 57/84 (67.86%), Postives = 62/84 (73.81%), Query Frame = 1 

Query: 1  MSIFTFSPSPSLSFFTPPTPPRR-SSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHP 60
          MSIF FSPS    F  PPTP RR SS F A T SS N   + G LA+LW KHDLRI DHP
Sbjct: 1  MSIFNFSPSFFPYFPPPPTPRRRRSSQFLATTHSSPN--PITGPLAVLWLKHDLRIHDHP 60

Query: 61 ALHAAASQFPALIPLYIFDSRLLS 84
          ALHAA+S FP+LIPLYIFDSR+LS
Sbjct: 61 ALHAASSHFPSLIPLYIFDSRILS 82

[Close]
BLAST of CmoCh15G014500 vs. NCBI nr
Match: gi|296084158|emb|CBI24546.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 74.7 bits (182), Expect = 8.9e-11
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 1 

Query: 4  FTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHA 63
          F+FSP+ +LSF  P       S FP A    A  + +   +A+LWFKHDLRIDDHP L A
Sbjct: 12 FSFSPN-TLSFGRP------RSRFPLAASKGAESSAIDDSVAVLWFKHDLRIDDHPGLVA 71

Query: 64 AASQFPALIPLYIFDSRLLS 84
          AAS+   +IPLY+FD R+LS
Sbjct: 72 AASRHRTVIPLYVFDRRILS 84

[Close]
BLAST of CmoCh15G014500 vs. NCBI nr
Match: gi|731423177|ref|XP_010662391.1| (PREDICTED: uncharacterized protein LOC100259267 isoform X1 [Vitis vinifera])

HSP 1 Score: 74.7 bits (182), Expect = 8.9e-11
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 1 

Query: 4  FTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHA 63
          F+FSP+ +LSF  P       S FP A    A  + +   +A+LWFKHDLRIDDHP L A
Sbjct: 26 FSFSPN-TLSFGRP------RSRFPLAASKGAESSAIDDSVAVLWFKHDLRIDDHPGLVA 85

Query: 64 AASQFPALIPLYIFDSRLLS 84
          AAS+   +IPLY+FD R+LS
Sbjct: 86 AASRHRTVIPLYVFDRRILS 98

[Close]
BLAST of CmoCh15G014500 vs. NCBI nr
Match: gi|731423179|ref|XP_010662392.1| (PREDICTED: uncharacterized protein LOC100259267 isoform X2 [Vitis vinifera])

HSP 1 Score: 74.7 bits (182), Expect = 8.9e-11
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 1 

Query: 4  FTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHA 63
          F+FSP+ +LSF  P       S FP A    A  + +   +A+LWFKHDLRIDDHP L A
Sbjct: 26 FSFSPN-TLSFGRP------RSRFPLAASKGAESSAIDDSVAVLWFKHDLRIDDHPGLVA 85

Query: 64 AASQFPALIPLYIFDSRLLS 84
          AAS+   +IPLY+FD R+LS
Sbjct: 86 AASRHRTVIPLYVFDRRILS 98

The following BLAST results are available for this feature:
BLAST of CmoCh15G014500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh15G014500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNA5_CUCSA1.5e-2068.67Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171170 PE=4 SV=1[more]
F6HAR5_VITVI6.2e-1151.25Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g01340 PE=4 SV=... [more]
A5C431_VITVI4.0e-1055.93Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024326 PE=4 SV=1[more]
A0A151TLK3_CAJCA9.0e-1049.40Uncharacterized protein OS=Cajanus cajan GN=KK1_021530 PE=4 SV=1[more]
A0A061FZF4_THECC1.5e-0950.00Hydrolase, putative isoform 2 OS=Theobroma cacao GN=TCM_014959 PE=4 SV=1[more]
BLAST of CmoCh15G014500 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G25290.13.1e-0960.00 DNA photolyases;DNA photolyases[more]
BLAST of CmoCh15G014500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449451936|ref|XP_004143716.1|2.1e-2068.67PREDICTED: uncharacterized protein LOC101210685 [Cucumis sativus][more]
gi|659074619|ref|XP_008437702.1|3.4e-1867.86PREDICTED: uncharacterized protein LOC103483047, partial [Cucumis melo][more]
gi|296084158|emb|CBI24546.3|8.9e-1151.25unnamed protein product [Vitis vinifera][more]
gi|731423177|ref|XP_010662391.1|8.9e-1151.25PREDICTED: uncharacterized protein LOC100259267 isoform X1 [Vitis vinifera][more]
gi|731423179|ref|XP_010662392.1|8.9e-1151.25PREDICTED: uncharacterized protein LOC100259267 isoform X2 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006050DNA_photolyase_N
IPR014729Rossmann-like_a/b/a_fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003904 deoxyribodipyrimidine photo-lyase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G014500.1CmoCh15G014500.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006050DNA photolyase, N-terminalPFAMPF00875DNA_photolyasecoord: 45..80
score: 2.3
IPR006050DNA photolyase, N-terminalPROFILEPS51645PHR_CRY_ALPHA_BETAcoord: 43..88
score: 17
IPR006050DNA photolyase, N-terminalunknownSSF52425Cryptochrome/photolyase, N-terminal domaincoord: 43..84
score: 2.75
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3DG3DSA:3.40.50.620coord: 43..82
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh15G014500Wax gourdcmowgoB0362
CmoCh15G014500Wax gourdcmowgoB0365
CmoCh15G014500Cucurbita moschata (Rifu)cmocmoB247
CmoCh15G014500Cucumber (Gy14) v1cgycmoB0277
CmoCh15G014500Cucurbita maxima (Rimu)cmacmoB287
CmoCh15G014500Cucurbita maxima (Rimu)cmacmoB580
CmoCh15G014500Wild cucumber (PI 183967)cmocpiB287
CmoCh15G014500Cucumber (Chinese Long) v2cmocuB278
CmoCh15G014500Melon (DHL92) v3.5.1cmomeB244
CmoCh15G014500Watermelon (Charleston Gray)cmowcgB244
CmoCh15G014500Watermelon (97103) v1cmowmB270
CmoCh15G014500Cucurbita pepo (Zucchini)cmocpeB269
CmoCh15G014500Cucurbita pepo (Zucchini)cmocpeB295
CmoCh15G014500Bottle gourd (USVL1VR-Ls)cmolsiB248
CmoCh15G014500Cucumber (Gy14) v2cgybcmoB573
CmoCh15G014500Melon (DHL92) v3.6.1cmomedB277
CmoCh15G014500Silver-seed gourdcarcmoB0965
CmoCh15G014500Cucumber (Chinese Long) v3cmocucB0336
CmoCh15G014500Watermelon (97103) v2cmowmbB267