CmoCh15G014360 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G014360
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNA-directed RNA polymerase subunit beta
Location	Cmo_Chr15 : 9752976 .. 9756167 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAACCCCACAAACAAAAAAAGGGGTTTCAGAGCTATCATACACAGATTCTGTAAACAACTCATCATCCTCCTCATTGGGATGGAGAGAAGGGTTTTGGTGGTGTGTTCTGTTGTGGGTTTACTCGGAATTTTATCATCTGTTACTGCTTTCGTTGCTGAGGCTACAAGAATCAAGGTCATTTCTTATGATTTCCCCTTTCGTTTCCCGTTTTTTACATTGGATTTTCACTTGCATTTGGTTTTGTGTTCCTGGGTTTCTCTTGCATTTCGTGAACATTCTCTTGGATTCTGTAATTACTGAGGAAAATGGAAGGGGGAAGGTTTTTTTTCTCTTGTTCATGTCTCTACTGAACTCTAGAAGGTAATGTATCTTATTGGAATGGTTGCAGTCCTTGTTCGTGGGCGGGAGGAGGTAGGGCAGTCTAGTCTAGTTTCATTACTATAGCGTAGTGTTAGATCGTAACTAGTGGACCTCTTATCTATTCTCTTCTCGATATCGGATCTTGCCCTGTTGTCAGAGTTGTCAAATCCAGAGTTGTCTCCAAAACAGGTACTGCAACCAATGCTCTCTACCCAGATCATTACTACTGGAATGGTTGCAGTTGTTGTCGTCTGTGTCTGTGGGTGGAAGGAGGCAGAGCAGTCTAGTCTAGTTTCGTTCCTATTGCATTGTGCTAGATCGTAACTAGCGGACCTCTTATTTATTCTCTTCTTGATATTGGGTCTTGCCTTGTTGTCGAGTTGTCAAATCGAGACTTATCTCCAAAACAGCTGCGACAACCTACTCTCTCTATCCAGATGATAACTATTGGAATGGTTGCAGTCTTATTTGTGGGTGGAAGGAGGTAGTGCAGTCTAGTCTAGTCTAGTTTCGTTCCTATAGCTTAGTGCTAGATCGTAACTAGCGGACCTCATATCTATTCTCTTCTTGATATTGGGTCTTGCCTTGTTGTCGAGTTGTCAAATTGAGACTTGTCTCTAAAACTGCTGCTGCAGCCAACGCTCTCTGTCTAGAGAGTTGTCTGCTATTCGATCCCATCCTCGATCCCACCCTATGAAACTTCCCAAGGTTTTCTTTCTATCCATCCCCTTCGAGGCATAGCGCTGGCACACCACCCGGTGTCTGGCTCTAATACCATTGTAACGGTTCAAACCCACCCCTAGTAGATATTCTTCTCTTTGGGCTTTCCCTTTCGGGCTTTCCCTCAAAGCTTTTAAAACGCGTCTGTTAGGGAGAGGCTTCGTGCGAACACTACCGTGTAATCGTTGAACTGATATTTAGATGGCGTTATTATCCATTGTTCTTTTGGTATTATTTATTGTACTTGAATCCATGAAAAGGAGTAACATTGATTCCAATTTATGTAACAGGGCTCTCAGGTTCAGTTTATCTCCACATCTGAGTGTGCATATCCACGGAGTCCAGCCATGGGTCTTGGTTTAACTGCTGCAATTTCTCTGTTGATTGCACAACTAATTGTAAATGTTTCAAGTGGTTGCATTTGTTGCAAAAGAAGTCCGAACCCTTCCAATCCTAATTGGAAAATAGCACTCCTGAGCTTCGTTATTTCTTGGTAACTGCTCTCTCGACCATTCTAATTCGATTCTCATTTCATCTAACACATGTCGGACACTTCGTGTGAGATCCCACGTCGGTTAGAGAGGGGAACGAAACATTTCTTATAAAGGTATGGAAACCTCTCCCTAGTAGACTTGTTTTAAAATCTTGAGAGGAAACCTAGAAGGGAAAGCTCGAGGAGGACAATATCTGCTAGCGGTGGGTTTGGACTGTTACAAATGGTATAAGAGCTAGACACCGAGCAGTGTACTAGCGAGGATGCTGGGCTCCCAAGGAGGCTGGATTGTGAGATCCCACATCGGTTGGAGACGGGAACAAAACATTCCTGAGAAGGGTGTGGAAACCTCTCCCTAGCAAATGTGTTCTAAAACCTTGAGGAGGGTGTGGAAACCTCTCCCTAGCAAATGTGTTCTAAAACCTTGAGGAGGGTGTGGAAACCTCTCCCTAGCAAATGTGTTCTAAAACCTTGAGGGAAAGCCTGGGAGGGAAAGCCCAAAGAGACAATATCTGTTAGCAGTGGGTTTGGGATTTTGGGATGTTACAAATGGTATCAGAGCCAAACACCGAGCAATGTGCCTGGGAGGACGCTAGACTCCCAAGGAGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAACAAGACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAACAAACACATTTTAAAGCCTTGAGGGGAAGCCTAGAAAGGAAAGCTCAAAGAGGACAATATCCGTTAGCGGTGGGCTTGAGTTGTTACACTTCTGACACATTTTGGACACTTGTTAGTGCAATAGATATGTTAGACACTAGTTGTGTGTGTATGTATATACACATCGTCTCTTCCATTCGTGGTCACCCTTGTTCGGTTATCGCTGTTGACGCCTCCACAAGTTCTCTGCGAATTCACTTGCAAATCCTACACATTTTGGGGAATTTAAGATCATAATCTTGTACGTTTTACACCATAACTCTATGTCTTGACGTCACATTCCATGCTGCATTCTCAGGTTCAGTTTTGTTATAGCCTTCTTGTTGTTGCTGACCGGTGCTGCCCTTAACGACCAGCACGGTGGCGGGACTATGTACTTCGGTAACTACTACTATTACTGCTATGTCGTCAAACCCGGAGTCTTTGCTGGAGGCGCCGTTCTGTCGTTTGCAAGTGTTCTATTGGCAATAGTCTATTACCTCACTTTAAATTTGGCAAAAAACAATAGCCCTTTGTTGGGGAACCCTGTTCCAGCTCAAGACATTGCTTTGGGGCAGCCTCAGTTTCCACTACAAAATACTCAGCAACCTGTTTTTGTTCACGAAGATACGTATGCACGCCGACAGTACGTGTGATTCATAGTCGGTCTCCGAGCATACTTTTGTGAGCTGAGTAAGCTTAGAGAACGAACTTTAGAAAGATATGGAAATTTGATGTTCCTCAGCATTTGGCTGTGTTTGTTTTGGTTTTGTTCCTGTATCGAAATCGATTAGCTTAGAGATACTGTATAGTAAGATTATCGAACAAAACATGTAGTCTTTATGTGAAAAGGAATGCCTTTGAATCGATTAGCTACTCCCTTCATCTTTGTCAATTAACGTGGCA

mRNA sequence

AAAAAAAAAAAACCCCACAAACAAAAAAAGGGGTTTCAGAGCTATCATACACAGATTCTGTAAACAACTCATCATCCTCCTCATTGGGATGGAGAGAAGGGTTTTGGTGGTGTGTTCTGTTGTGGGTTTACTCGGAATTTTATCATCTGTTACTGCTTTCGTTGCTGAGGCTACAAGAATCAAGGGCTCTCAGGTTCAGTTTATCTCCACATCTGAGTGTGCATATCCACGGAGTCCAGCCATGGGTCTTGGTTTAACTGCTGCAATTTCTCTGTTGATTGCACAACTAATTGTAAATGTTTCAAGTGGTTGCATTTGTTGCAAAAGAAGTCCGAACCCTTCCAATCCTAATTGGAAAATAGCACTCCTGAGCTTCGTTATTTCTTGGTTCAGTTTTGTTATAGCCTTCTTGTTGTTGCTGACCGGTGCTGCCCTTAACGACCAGCACGGTGGCGGGACTATGTACTTCGGTAACTACTACTATTACTGCTATGTCGTCAAACCCGGAGTCTTTGCTGGAGGCGCCGTTCTGTCGTTTGCAAGTGTTCTATTGGCAATAGTCTATTACCTCACTTTAAATTTGGCAAAAAACAATAGCCCTTTGTTGGGGAACCCTGTTCCAGCTCAAGACATTGCTTTGGGGCAGCCTCAGTTTCCACTACAAAATACTCAGCAACCTGTTTTTGTTCACGAAGATACGTATGCACGCCGACAGTACGTGTGATTCATAGTCGGTCTCCGAGCATACTTTTGTGAGCTGAGTAAGCTTAGAGAACGAACTTTAGAAAGATATGGAAATTTGATGTTCCTCAGCATTTGGCTGTGTTTGTTTTGGTTTTGTTCCTGTATCGAAATCGATTAGCTTAGAGATACTGTATAGTAAGATTATCGAACAAAACATGTAGTCTTTATGTGAAAAGGAATGCCTTTGAATCGATTAGCTACTCCCTTCATCTTTGTCAATTAACGTGGCA

Coding sequence (CDS)

ATGGAGAGAAGGGTTTTGGTGGTGTGTTCTGTTGTGGGTTTACTCGGAATTTTATCATCTGTTACTGCTTTCGTTGCTGAGGCTACAAGAATCAAGGGCTCTCAGGTTCAGTTTATCTCCACATCTGAGTGTGCATATCCACGGAGTCCAGCCATGGGTCTTGGTTTAACTGCTGCAATTTCTCTGTTGATTGCACAACTAATTGTAAATGTTTCAAGTGGTTGCATTTGTTGCAAAAGAAGTCCGAACCCTTCCAATCCTAATTGGAAAATAGCACTCCTGAGCTTCGTTATTTCTTGGTTCAGTTTTGTTATAGCCTTCTTGTTGTTGCTGACCGGTGCTGCCCTTAACGACCAGCACGGTGGCGGGACTATGTACTTCGGTAACTACTACTATTACTGCTATGTCGTCAAACCCGGAGTCTTTGCTGGAGGCGCCGTTCTGTCGTTTGCAAGTGTTCTATTGGCAATAGTCTATTACCTCACTTTAAATTTGGCAAAAAACAATAGCCCTTTGTTGGGGAACCCTGTTCCAGCTCAAGACATTGCTTTGGGGCAGCCTCAGTTTCCACTACAAAATACTCAGCAACCTGTTTTTGTTCACGAAGATACGTATGCACGCCGACAGTACGTGTGA

Homology

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BLAST of CmoCh15G014360 vs. TrEMBL
Match: A0A0A0KRK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G168970 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 2.5e-106
Identity = 200/210 (95.24%), Postives = 203/210 (96.67%), Query Frame = 1


Query: 1   MERRVLVVCSVVGLLGILSSVTAFVAEATRIKGSQVQFISTSECAYPRSPAMGLGLTAAI 60
           MER+VLVVCSVVGLLGILS+VT FVAEATRIKGSQVQFISTSECAYPRSPAMGLGLTAAI
Sbjct: 1   MERKVLVVCSVVGLLGILSAVTGFVAEATRIKGSQVQFISTSECAYPRSPAMGLGLTAAI 60

Query: 61  SLLIAQLIVNVSSGCICCKRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQH 120
           SLLIAQLIVNVSSGCICCKRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQH
Sbjct: 61  SLLIAQLIVNVSSGCICCKRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQH 120

Query: 121 GGGTMYFGNYYYYCYVVKPGVFAGGAVLSFASVLLAIVYYLTLNLAKNNSPLLGNPVPAQ 180
           GGGTMYFGNYYYYCYVVKPGVFAGGA+LS ASVLLAIVYYLTLNLAKNNSPL GN  PAQ
Sbjct: 121 GGGTMYFGNYYYYCYVVKPGVFAGGAILSLASVLLAIVYYLTLNLAKNNSPLWGNSAPAQ 180

Query: 181 DIALGQPQFPLQNTQQPVFVHEDTYARRQY 211
            IALGQPQFP QNTQQPVFVHEDTYARRQY
Sbjct: 181 GIALGQPQFPPQNTQQPVFVHEDTYARRQY 210

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BLAST of CmoCh15G014360 vs. TrEMBL
Match: A0A067EBD4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028344mg PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.9e-77
Identity = 154/212 (72.64%), Postives = 179/212 (84.43%), Query Frame = 1


Query: 1   MERRVLVVCSVVGLLGILSSVTAFVAEATRIKGSQVQFISTSECAYPRSPAMGLGLTAAI 60
           MER+VL +CS VGLLG+LS+ T F AEATRIKGSQVQ  S ++C+YPRSPA+GLGLTAA+
Sbjct: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60

Query: 61  SLLIAQLIVNVSSGCICCKRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQH 120
           SLLIAQ+ +NV++GCICC+R P+PSN NW IAL+ FV+SWF+FVIAFLLLLTGAALNDQH
Sbjct: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120

Query: 121 GGGTMYFGNYYYYCYVVKPGVFAGGAVLSFASVLLAIVYYLTLNLAKNNSPLLGNPVPAQ 180
           G  +MYFGN  YYCYVVKPGVFAGGAVLS ASV L I+YYLTL+ AK NS L GN    Q
Sbjct: 121 GEESMYFGN--YYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAK-NSGLWGNSSVPQ 180

Query: 181 D--IALGQPQFPLQNTQQPVFVHEDTYARRQY 211
           +  IA+GQPQFP Q TQ+PVFVHEDTY RRQ+
Sbjct: 181 EGGIAMGQPQFPPQRTQEPVFVHEDTYMRRQF 209

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BLAST of CmoCh15G014360 vs. TrEMBL
Match: B9S1Y3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1324340 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 6.6e-75
Identity = 144/211 (68.25%), Postives = 174/211 (82.46%), Query Frame = 1


Query: 1   MERRVLVVCSVVGLLGILSSVTAFVAEATRIKGSQVQFISTSECAYPRSPAMGLGLTAAI 60
           MER   V+C VVG LG+LS+ T F AEATRIKGS+VQF S ++C YPRSPA+ LGLT+A+
Sbjct: 1   MERNAFVLCCVVGFLGLLSAATGFGAEATRIKGSEVQFTSATQCTYPRSPALALGLTSAV 60

Query: 61  SLLIAQLIVNVSSGCICCKRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQH 120
           +L+IAQ+++NV++GCICCKRSP+PSN NW IAL+ FV+SWF+FVI+FLLLLTGAALNDQH
Sbjct: 61  ALMIAQVLINVATGCICCKRSPHPSNSNWTIALVCFVVSWFTFVISFLLLLTGAALNDQH 120

Query: 121 GGGTMYFGNYYYYCYVVKPGVFAGGAVLSFASVLLAIVYYLTLNLAKN-NSPLLGNPVPA 180
           G  +MYFG+  YYCYVVKPGVFAGGAVL+ ASV L I+YYLTLN +K+ N P    PV  
Sbjct: 121 GEESMYFGS--YYCYVVKPGVFAGGAVLALASVTLGILYYLTLNSSKSVNGPWANPPVSN 180

Query: 181 QDIALGQPQFPLQNTQQPVFVHEDTYARRQY 211
             IA+GQPQF  Q+TQ PVFVHEDTY RRQ+
Sbjct: 181 SGIAMGQPQFTPQSTQDPVFVHEDTYMRRQF 209

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BLAST of CmoCh15G014360 vs. TrEMBL
Match: A0A067JD79_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00583 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.9e-74
Identity = 146/213 (68.54%), Postives = 173/213 (81.22%), Query Frame = 1


Query: 1   MERRVLVVCSVVGLLGILSSVTAFVAEATRIKGSQVQFISTSECAYPRSPAMGLGLTAAI 60
           MERR L +CS VG LG+LS+ T F AE TRIKGS+VQF S ++C YPRSPAM LGLT+A+
Sbjct: 1   MERRALFLCSAVGFLGLLSAATGFAAEGTRIKGSEVQFTSATQCTYPRSPAMALGLTSAV 60

Query: 61  SLLIAQLIVNVSSGCICCKRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQH 120
           +L+IAQ+I+NV++GCICCKRSP PSN NW IAL+ FV+SWF+FVIAFLLLLTGAALNDQH
Sbjct: 61  ALMIAQVIINVATGCICCKRSPQPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120

Query: 121 GGGTMYFGNYYYYCYVVKPGVFAGGAVLSFASVLLAIVYYLTLNLAKNNSPLLGNPVPAQ 180
           G  +MYFGN  YYCYVVKPGVFAGGAVLSFAS+ L I+YYLTLN +K+ +   GNP  + 
Sbjct: 121 GEESMYFGN--YYCYVVKPGVFAGGAVLSFASITLGILYYLTLNSSKSINSTWGNPPVSS 180

Query: 181 D--IALGQPQFPLQ-NTQQPVFVHEDTYARRQY 211
              IA+GQPQ   Q  TQ P+FVHEDTY RRQ+
Sbjct: 181 STGIAMGQPQNTSQGGTQDPIFVHEDTYMRRQF 211

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BLAST of CmoCh15G014360 vs. TrEMBL
Match: M5X117_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011406mg PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 2.1e-73
Identity = 143/213 (67.14%), Postives = 173/213 (81.22%), Query Frame = 1


Query: 1   MERRVLVVCSVVGLLGILSSVTAFVAEATRIKGSQVQFISTSECAYPRSPAMGLGLTAAI 60
           MER+VL+VC  VGLLG+LS+ T F AE TRIKGSQV+F+S ++C YPRSPA+GLG+TAA+
Sbjct: 1   MERKVLLVCCAVGLLGLLSAATGFGAEVTRIKGSQVRFVSVTQCEYPRSPALGLGVTAAV 60

Query: 61  SLLIAQLIVNVSSGCICCKRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQH 120
           +L++AQ+I+NVS+GCICCKRSP PSN NW +AL  FV+SWF+FVIAFLLLLTGA LND+H
Sbjct: 61  ALMLAQIILNVSTGCICCKRSPQPSNSNWTVALFCFVVSWFTFVIAFLLLLTGATLNDRH 120

Query: 121 GGGTMYFGNYYYYCYVVKPGVFAGGAVLSFASVLLAIVYYLTLNLAKNNSPLLGNPVPAQ 180
           G  +MYFGN  YYCYVVKPGVF GGA LS ASV+L IVYY+TLN  K+++   G   P  
Sbjct: 121 GVESMYFGN--YYCYVVKPGVFGGGAGLSLASVVLGIVYYVTLNSVKDSNSPWGTSAPPN 180

Query: 181 D--IALGQPQF-PLQNTQQPVFVHEDTYARRQY 211
              IA+GQPQF P   TQ+PVFVHEDTY RRQ+
Sbjct: 181 PGAIAMGQPQFPPPSTTQEPVFVHEDTYMRRQF 211

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BLAST of CmoCh15G014360 vs. TAIR10
Match: AT5G17210.1 (AT5G17210.1 Protein of unknown function (DUF1218))

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-59
Identity = 121/213 (56.81%), Postives = 154/213 (72.30%), Query Frame = 1


Query: 1   MERRVLVVCSVVGLLGILSSVTAFVAEATRIKGSQVQFI---STSECAYPRSPAMGLGLT 60
           MERR +V+C V+ LLG+LS+VTAFVAEATRIK SQV      S ++C YPRSPA  LG T
Sbjct: 1   MERRKIVMCGVLFLLGLLSAVTAFVAEATRIKRSQVTVTVSDSITKCTYPRSPAFNLGFT 60

Query: 61  AAISLLIAQLIVNVSSGCICCKRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALN 120
           +A+ L++AQ+IV+VSSGC CC++ P PS  NW I+L+ FV+SWF+FVIAFL+LL+GAALN
Sbjct: 61  SALFLMMAQIIVSVSSGCFCCRKGPAPSRSNWIISLICFVVSWFTFVIAFLVLLSGAALN 120

Query: 121 DQHGGGTMYFGNYYYYCYVVKPGVFAGGAVLSFASVLLAIVYYLTLNLAKNNSPLLGNPV 180
           D+H   +M  G   Y+CY+VKPGVF+ GAVLS  ++ L IVYYL   L  N   +     
Sbjct: 121 DEHTEESMNAGT--YFCYIVKPGVFSTGAVLSLVTIALGIVYYLC--LTSNKQIVAATTT 180

Query: 181 PAQDIALGQPQFPLQNTQQPVFVHEDTYARRQY 211
               IA+GQPQ P +  + PVFVHEDTY RRQ+
Sbjct: 181 QGTGIAMGQPQIP-ERVEDPVFVHEDTYMRRQF 208

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BLAST of CmoCh15G014360 vs. TAIR10
Match: AT1G61065.1 (AT1G61065.1 Protein of unknown function (DUF1218))

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-16
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 1


Query: 42  SECAYPRSPAMGLGLTAAISLLIAQLIVNVSSGCICCKRSPNPS-NPNWKIALLSFVISW 101
           S C Y +  A GLG+ + + LL +QL++ V+S C+CC R+  PS + +W I L  F+ +W
Sbjct: 41  SYCVYDKDIATGLGVGSFLVLLASQLLIMVASRCLCCGRALTPSGSRSWAIFL--FITTW 100

Query: 102 FSFVIAFLLLLTGAALNDQHGGGTMYFGNYYYYCYVVKPGVFAGGAVLSFASVLLAIVYY 161
             F IA + LL G+  N  H    +YFGN    C  ++ GVF  GA     + +++ +YY
Sbjct: 101 VFFFIAQVCLLAGSVRNAYHTKYRVYFGNTSPSCRSLRKGVFGAGAAFIVLTGIVSELYY 160

Query: 162 LTLNLAKNNSP 172
           +TL+ AK+  P
Sbjct: 161 VTLSRAKDFQP 169

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BLAST of CmoCh15G014360 vs. TAIR10
Match: AT1G68220.1 (AT1G68220.1 Protein of unknown function (DUF1218))

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-10
Identity = 50/156 (32.05%), Postives = 76/156 (48.72%), Query Frame = 1


Query: 8   VCSVVGLLGILSSVTAFVAEATRIKGSQV--QFISTSECAYPRSPAMGLGLTAAISLLIA 67
           + +VV  L +L+ V AF AE  R     V  Q+   + C Y    +   G++A   LL++
Sbjct: 7   ILTVVTALHLLAFVFAFGAERRRSTAVPVPDQYDEKTICKYGTEASTVYGMSAFGLLLVS 66

Query: 68  QLIVNVSSGCICCKRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQHGGGTM 127
           Q +VN  + C+C  +           A++ FV+SW SF+ A   LL G+A N  H     
Sbjct: 67  QAVVNGVTKCLCFGKGLVTGTSYTVWAIVFFVVSWVSFLGAEACLLGGSARNAYHTKSEG 126

Query: 128 YFGNYYYYCYVVKPGVFAGGAVLSFASVLLAIVYYL 162
            +      C V+  GVFA GA  +  S++  I+YYL
Sbjct: 127 IYKGKELSCAVLPVGVFAAGAAFTLMSLIATILYYL 162

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BLAST of CmoCh15G014360 vs. TAIR10
Match: AT4G27435.1 (AT4G27435.1 Protein of unknown function (DUF1218))

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-10
Identity = 44/156 (28.21%), Postives = 76/156 (48.72%), Query Frame = 1


Query: 7   VVCSVVGLLGILSSVTAFVAEATRIKGSQVQF--ISTSECAYPRSPAMGLGLTAAISLLI 66
           +V ++V +  +++   A  AE  R     VQ   +  + C Y    A G G+ A +  + 
Sbjct: 5   IVSAIVFVFNLIAFGLAVAAEQRRSTARVVQDTEVQYNYCVYDSDRATGYGVGAFLFSVA 64

Query: 67  AQLIVNVSSGCICCKRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQHGGGT 126
           +Q+++ + S C CC +   P      +AL+ F++SW  F+IA + LL G+  N  H    
Sbjct: 65  SQILIMLVSRCFCCGKPLKPGGSR-ALALILFIVSWMFFLIAEICLLAGSVENAYHTKYR 124

Query: 127 MYFGNYYYYCYVVKPGVFAGGAVLSFASVLLAIVYY 161
             F +    C  ++ GVFA GA   F + +++  YY
Sbjct: 125 TMFMDNPPDCQTLRKGVFAAGASFVFFNAIVSQFYY 159

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BLAST of CmoCh15G014360 vs. TAIR10
Match: AT1G52910.1 (AT1G52910.1 Protein of unknown function (DUF1218))

HSP 1 Score: 57.8 bits (138), Expect = 9.6e-09
Identity = 48/168 (28.57%), Postives = 80/168 (47.62%), Query Frame = 1


Query: 7   VVCSVVGLLGILSSVTAFVAEATRIKGSQVQFISTS--ECAYPRSPAMGLGLTAAISLLI 66
           +V  +V +L +++   A  AE  R  G  V         C Y    A   G  A + L I
Sbjct: 5   LVIIIVFILDLIAVGLAIAAEQRRSVGKVVPDGEKEFEHCEYGSDIATSYGAGAFVLLFI 64

Query: 67  AQLIVNVSSGCICCKRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQHGGGT 126
           +Q+I+ V+S C CC ++  P        ++ F+I W  F+IA + LL G+  N  H   T
Sbjct: 65  SQVIIMVASRCFCCGKALKPGGSR-ACGIMLFLICWVFFLIAEVCLLAGSIRNAYH---T 124

Query: 127 MYFGNYYYY----CYVVKPGVFAGGAVLSFASVLLAIVYYLTLNLAKN 169
            Y   +       C V++ GVFA GA  +  + +++  YY++ + A++
Sbjct: 125 TYRRMWNIENPPSCEVIRKGVFAAGASFALFTAIVSQFYYISYSRARD 168

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BLAST of CmoCh15G014360 vs. NCBI nr
Match: gi|449451825|ref|XP_004143661.1| (PREDICTED: uncharacterized protein LOC101216661 [Cucumis sativus])

HSP 1 Score: 392.9 bits (1008), Expect = 3.6e-106
Identity = 200/210 (95.24%), Postives = 203/210 (96.67%), Query Frame = 1


Query: 1   MERRVLVVCSVVGLLGILSSVTAFVAEATRIKGSQVQFISTSECAYPRSPAMGLGLTAAI 60
           MER+VLVVCSVVGLLGILS+VT FVAEATRIKGSQVQFISTSECAYPRSPAMGLGLTAAI
Sbjct: 1   MERKVLVVCSVVGLLGILSAVTGFVAEATRIKGSQVQFISTSECAYPRSPAMGLGLTAAI 60

Query: 61  SLLIAQLIVNVSSGCICCKRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQH 120
           SLLIAQLIVNVSSGCICCKRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQH
Sbjct: 61  SLLIAQLIVNVSSGCICCKRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQH 120

Query: 121 GGGTMYFGNYYYYCYVVKPGVFAGGAVLSFASVLLAIVYYLTLNLAKNNSPLLGNPVPAQ 180
           GGGTMYFGNYYYYCYVVKPGVFAGGA+LS ASVLLAIVYYLTLNLAKNNSPL GN  PAQ
Sbjct: 121 GGGTMYFGNYYYYCYVVKPGVFAGGAILSLASVLLAIVYYLTLNLAKNNSPLWGNSAPAQ 180

Query: 181 DIALGQPQFPLQNTQQPVFVHEDTYARRQY 211
            IALGQPQFP QNTQQPVFVHEDTYARRQY
Sbjct: 181 GIALGQPQFPPQNTQQPVFVHEDTYARRQY 210

[Close]

BLAST of CmoCh15G014360 vs. NCBI nr
Match: gi|659073197|ref|XP_008467305.1| (PREDICTED: uncharacterized protein LOC103504685 [Cucumis melo])

HSP 1 Score: 391.7 bits (1005), Expect = 7.9e-106
Identity = 199/210 (94.76%), Postives = 203/210 (96.67%), Query Frame = 1


Query: 1   MERRVLVVCSVVGLLGILSSVTAFVAEATRIKGSQVQFISTSECAYPRSPAMGLGLTAAI 60
           MER+VLVVCSVVGLLGILS+VT FVAEATRIKGSQVQFISTSECAYPRSPAMGLGLTAAI
Sbjct: 1   MERKVLVVCSVVGLLGILSAVTGFVAEATRIKGSQVQFISTSECAYPRSPAMGLGLTAAI 60

Query: 61  SLLIAQLIVNVSSGCICCKRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQH 120
           SLLIAQLIVNVSSGCICC+RSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQH
Sbjct: 61  SLLIAQLIVNVSSGCICCRRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQH 120

Query: 121 GGGTMYFGNYYYYCYVVKPGVFAGGAVLSFASVLLAIVYYLTLNLAKNNSPLLGNPVPAQ 180
           GGGTMYFGNYYYYCYVVKPGVFAGGA+LS ASVLLAIVYYLTLNLAK NSPL GNPVPAQ
Sbjct: 121 GGGTMYFGNYYYYCYVVKPGVFAGGAILSLASVLLAIVYYLTLNLAKTNSPLWGNPVPAQ 180

Query: 181 DIALGQPQFPLQNTQQPVFVHEDTYARRQY 211
            IALGQP FP QNTQQPVFVHEDTYARRQY
Sbjct: 181 GIALGQPPFPPQNTQQPVFVHEDTYARRQY 210

[Close]

BLAST of CmoCh15G014360 vs. NCBI nr
Match: gi|641833512|gb|KDO52524.1| (hypothetical protein CISIN_1g028344mg [Citrus sinensis])

HSP 1 Score: 297.0 bits (759), Expect = 2.7e-77
Identity = 154/212 (72.64%), Postives = 179/212 (84.43%), Query Frame = 1


Query: 1   MERRVLVVCSVVGLLGILSSVTAFVAEATRIKGSQVQFISTSECAYPRSPAMGLGLTAAI 60
           MER+VL +CS VGLLG+LS+ T F AEATRIKGSQVQ  S ++C+YPRSPA+GLGLTAA+
Sbjct: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60

Query: 61  SLLIAQLIVNVSSGCICCKRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQH 120
           SLLIAQ+ +NV++GCICC+R P+PSN NW IAL+ FV+SWF+FVIAFLLLLTGAALNDQH
Sbjct: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120

Query: 121 GGGTMYFGNYYYYCYVVKPGVFAGGAVLSFASVLLAIVYYLTLNLAKNNSPLLGNPVPAQ 180
           G  +MYFGN  YYCYVVKPGVFAGGAVLS ASV L I+YYLTL+ AK NS L GN    Q
Sbjct: 121 GEESMYFGN--YYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAK-NSGLWGNSSVPQ 180

Query: 181 D--IALGQPQFPLQNTQQPVFVHEDTYARRQY 211
           +  IA+GQPQFP Q TQ+PVFVHEDTY RRQ+
Sbjct: 181 EGGIAMGQPQFPPQRTQEPVFVHEDTYMRRQF 209

[Close]

BLAST of CmoCh15G014360 vs. NCBI nr
Match: gi|568877605|ref|XP_006491818.1| (PREDICTED: uncharacterized protein LOC102608001 [Citrus sinensis])

HSP 1 Score: 295.4 bits (755), Expect = 7.7e-77
Identity = 153/212 (72.17%), Postives = 179/212 (84.43%), Query Frame = 1


Query: 1   MERRVLVVCSVVGLLGILSSVTAFVAEATRIKGSQVQFISTSECAYPRSPAMGLGLTAAI 60
           MER+VL +CS VGLLG+LS+ T F AEATRIKGSQVQ  S ++C+YPRSPA+GLGLTAA+
Sbjct: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60

Query: 61  SLLIAQLIVNVSSGCICCKRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQH 120
           SLLIAQ+ +NV++GCICC+R P+PSN NW IAL+ FV+SWF+FVIAFLLLLTGAALNDQH
Sbjct: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120

Query: 121 GGGTMYFGNYYYYCYVVKPGVFAGGAVLSFASVLLAIVYYLTLNLAKNNSPLLGNPVPAQ 180
           G  +MYFGN  YYCYVVKPGVFAGGAVLS ASV L I+YYLTL+ AK NS L GN    Q
Sbjct: 121 GEESMYFGN--YYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAK-NSGLWGNSSVPQ 180

Query: 181 D--IALGQPQFPLQNTQQPVFVHEDTYARRQY 211
           +  IA+GQPQFP Q TQ+PVFVHEDT+ RRQ+
Sbjct: 181 EGGIAMGQPQFPPQRTQEPVFVHEDTFMRRQF 209

[Close]

BLAST of CmoCh15G014360 vs. NCBI nr
Match: gi|694364163|ref|XP_009361211.1| (PREDICTED: uncharacterized protein LOC103951530 [Pyrus x bretschneideri])

HSP 1 Score: 294.7 bits (753), Expect = 1.3e-76
Identity = 151/213 (70.89%), Postives = 176/213 (82.63%), Query Frame = 1


Query: 1   MERRVLVVCSVVGLLGILSSVTAFVAEATRIKGSQVQFISTSECAYPRSPAMGLGLTAAI 60
           MER+VL+VC  VGLLG+LS+ T F AE TRIKGSQVQF+ST +C YPRSPA+GLG+TAA+
Sbjct: 1   MERKVLLVCCAVGLLGLLSAATGFGAEGTRIKGSQVQFVSTVQCEYPRSPALGLGVTAAM 60

Query: 61  SLLIAQLIVNVSSGCICCKRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQH 120
           +LL+AQ+I+NV SGCICCKRSP PSN NW +AL  FV+SWF+FVIAFLLLLTGAALND+H
Sbjct: 61  ALLLAQIIINVFSGCICCKRSPQPSNSNWTVALFCFVLSWFTFVIAFLLLLTGAALNDRH 120

Query: 121 GGGTMYFGNYYYYCYVVKPGVFAGGAVLSFASVLLAIVYYLTLNLAKNNSPLLGNPVPAQ 180
           G  +MYFGN  YYCYVVKPGVFAGGA+LS ASV L IVYY+TLN AKN+ P      P Q
Sbjct: 121 GVESMYFGN--YYCYVVKPGVFAGGALLSIASVALGIVYYVTLNSAKNSDPSWAGSTPNQ 180

Query: 181 D-IALGQPQFPLQN--TQQPVFVHEDTYARRQY 211
             IA+GQPQ P Q+  TQ+PVFVHEDTY RRQ+
Sbjct: 181 GAIAMGQPQMPPQSTTTQEPVFVHEDTYMRRQF 211

The following BLAST results are available for this feature:

BLAST of CmoCh15G014360 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G014360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRK6_CUCSA	2.5e-106	95.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G168970 PE=4 SV=1	[more]
A0A067EBD4_CITSI	1.9e-77	72.64	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028344mg PE=4 SV=1	[more]
B9S1Y3_RICCO	6.6e-75	68.25	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1324340 PE=4 SV=1	[more]
A0A067JD79_JATCU	1.9e-74	68.54	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00583 PE=4 SV=1	[more]
M5X117_PRUPE	2.1e-73	67.14	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011406mg PE=4 SV=1	[more]

BLAST of CmoCh15G014360 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G17210.1	1.2e-59	56.81	Protein of unknown function (DUF1218)	[more]
AT1G61065.1	2.1e-16	37.40	Protein of unknown function (DUF1218)	[more]
AT1G68220.1	1.3e-10	32.05	Protein of unknown function (DUF1218)	[more]
AT4G27435.1	2.3e-10	28.21	Protein of unknown function (DUF1218)	[more]
AT1G52910.1	9.6e-09	28.57	Protein of unknown function (DUF1218)	[more]

BLAST of CmoCh15G014360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451825\|ref\|XP_004143661.1\|	3.6e-106	95.24	PREDICTED: uncharacterized protein LOC101216661 [Cucumis sativus]	[more]
gi\|659073197\|ref\|XP_008467305.1\|	7.9e-106	94.76	PREDICTED: uncharacterized protein LOC103504685 [Cucumis melo]	[more]
gi\|641833512\|gb\|KDO52524.1\|	2.7e-77	72.64	hypothetical protein CISIN_1g028344mg [Citrus sinensis]	[more]
gi\|568877605\|ref\|XP_006491818.1\|	7.7e-77	72.17	PREDICTED: uncharacterized protein LOC102608001 [Citrus sinensis]	[more]
gi\|694364163\|ref\|XP_009361211.1\|	1.3e-76	70.89	PREDICTED: uncharacterized protein LOC103951530 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009606	DUF1218

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G014360.1	CmoCh15G014360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009606	Protein of unknown function DUF1218	PFAM	PF06749	DUF1218	coord: 58..153 score: 2.1
None	No IPR available	PANTHER	PTHR31769	FAMILY NOT NAMED	coord: 1..211 score: 4.3
None	No IPR available	PANTHER	PTHR31769:SF8	SUBFAMILY NOT NAMED	coord: 1..211 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G014360	Cucsa.128990	Cucumber (Gy14) v1	cgycmoB0344
CmoCh15G014360	CmaCh15G013740	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G014360	CmaCh02G010020	Cucurbita maxima (Rimu)	cmacmoB580
CmoCh15G014360	Cla003588	Watermelon (97103) v1	cmowmB270
CmoCh15G014360	Csa5G168970	Cucumber (Chinese Long) v2	cmocuB278
CmoCh15G014360	MELO3C005433	Melon (DHL92) v3.5.1	cmomeB244
CmoCh15G014360	ClCG01G005010	Watermelon (Charleston Gray)	cmowcgB244
CmoCh15G014360	CSPI05G07840	Wild cucumber (PI 183967)	cmocpiB287
CmoCh15G014360	Lsi09G005280	Bottle gourd (USVL1VR-Ls)	cmolsiB248
CmoCh15G014360	Cp4.1LG13g00630	Cucurbita pepo (Zucchini)	cmocpeB269
CmoCh15G014360	MELO3C005433.2	Melon (DHL92) v3.6.1	cmomedB277
CmoCh15G014360	CsaV3_5G005270	Cucumber (Chinese Long) v3	cmocucB0336
CmoCh15G014360	Cla97C01G005240	Watermelon (97103) v2	cmowmbB267
CmoCh15G014360	CsGy5G005250	Cucumber (Gy14) v2	cgybcmoB573
CmoCh15G014360	Carg20829	Silver-seed gourd	carcmoB1387

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G014360	Wax gourd	cmowgoB0365
CmoCh15G014360	Cucurbita moschata (Rifu)	cmocmoB247
CmoCh15G014360	Cucurbita pepo (Zucchini)	cmocpeB295
CmoCh15G014360	Silver-seed gourd	carcmoB0965