CmoCh15G012440 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G012440
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Descriptionbasic helix-loop-helix (bHLH) DNA-binding superfamily protein
LocationCmo_Chr15 : 8548894 .. 8549354 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCCAAGATTCAAATGCTGACCAACAAAAGAGATGAGCTAAAGAGCCTTTTTAAGGATGATTCGGACACTCATACTGTCGAAACATTGCAATCTTCGAAAAAGGACTTTGTGGTAGTGAAGCCAAGATTGGAAGGATTTCAAGTTGTTGTAGACACGGCCACCCAACATAGCTTCCCACTTTCAATGATTCTAAAATCTCTACTTACACAAAATCTCGAAATCATCAGCTGCATTACGACCAAGATAAATGGTAGGTACCTTCACACTATTGAATTTGAAGCTGTCAATGTTGGAACAATCGATACGTCCAAGATCCAACATAAGTTGACCAACTTGAAATACTCTTAATTAGATTAGATCACTTCTCATTTGCATAGCTAGACATGTTCTAAAACAAGTTAAATTTATAGATATTTTTAGTAAAATTTATAGATATTTTTGTTAACAGTTTATAA

mRNA sequence

ATGCAAGCCAAGATTCAAATGCTGACCAACAAAAGAGATGAGCTAAAGAGCCTTTTTAAGGATGATTCGGACACTCATACTGTCGAAACATTGCAATCTTCGAAAAAGGACTTTGTGGTAGTGAAGCCAAGATTGGAAGGATTTCAAGTTGTTGTAGACACGGCCACCCAACATAGCTTCCCACTTTCAATGATTCTAAAATCTCTACTTACACAAAATCTCGAAATCATCAGCTGCATTACGACCAAGATAAATGGTAGTTTATAA

Coding sequence (CDS)

ATGCAAGCCAAGATTCAAATGCTGACCAACAAAAGAGATGAGCTAAAGAGCCTTTTTAAGGATGATTCGGACACTCATACTGTCGAAACATTGCAATCTTCGAAAAAGGACTTTGTGGTAGTGAAGCCAAGATTGGAAGGATTTCAAGTTGTTGTAGACACGGCCACCCAACATAGCTTCCCACTTTCAATGATTCTAAAATCTCTACTTACACAAAATCTCGAAATCATCAGCTGCATTACGACCAAGATAAATGGTAGTTTATAA
Homology
[Close]
BLAST of CmoCh15G012440 vs. TrEMBL
Match: A0A0A0KMQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G157230 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.2e-15
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 1 

Query: 1   MQAKIQMLTNKRDELKSLFKDDSDTH---TVETLQSSKKDFVVVKPR-LEGFQVVVDTAT 60
           MQ KIQML NKRDELK   +D  D+    T+ETL SSK+D V+V PR   G Q+++DTAT
Sbjct: 131 MQTKIQMLRNKRDELKKNIEDGEDSRNITTIETLNSSKRDSVLVMPRSCGGVQILLDTAT 190

Query: 61  QHSFPLSMILKSLLTQNLEIISCITTKIN 86
            H  PLS ++K L+TQNL+IISC +T+ N
Sbjct: 191 HHRLPLSNLIKFLITQNLQIISCHSTRKN 219

[Close]
BLAST of CmoCh15G012440 vs. TrEMBL
Match: A0A097IYP0_CUCSA (BHLH transcription factor OS=Cucumis sativus GN=Csa5G157230 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.1e-15
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 1 

Query: 1   MQAKIQMLTNKRDELKSLFKDDSDTH---TVETLQSSKKDFVVVKPR-LEGFQVVVDTAT 60
           MQ KIQML NKRDELK   +D  D+    T+ETL SSK+D V+V PR   G Q+++DTAT
Sbjct: 131 MQTKIQMLRNKRDELKKNIEDGEDSGNITTIETLNSSKRDSVLVMPRSCGGVQILLDTAT 190

Query: 61  QHSFPLSMILKSLLTQNLEIISCITTKIN 86
            H  PLS ++K L+TQNL+IISC +T+ N
Sbjct: 191 HHRLPLSNLIKFLITQNLQIISCHSTRKN 219

[Close]
BLAST of CmoCh15G012440 vs. TrEMBL
Match: A0A0A0KKN9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G157220 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-10
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1 

Query: 1   MQAKIQMLTNKRDELKSLFKDDSDTHTVET--LQSSKKDFVVVKPR--LEGFQVVVDTAT 60
           MQ+KIQ L +KRDELK L  ++ +   VET  LQS+K+D VVV+ R    G QV++DT T
Sbjct: 132 MQSKIQELCDKRDELKKLQSNNQNPGMVETETLQSTKRDKVVVRARDGSGGIQVILDTPT 191

Query: 61  QHSFPLSMILKSLLTQNLEIISCITTKIN 86
           QH   LS IL++L+ Q  EI+SC + K+N
Sbjct: 192 QHRLTLSNILEALIDQGFEILSCSSNKLN 220

[Close]
BLAST of CmoCh15G012440 vs. TrEMBL
Match: A0A061G5T3_THECC (Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma cacao GN=TCM_016133 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-07
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 1 

Query: 1   MQAKIQMLTNKRDELKSLFKDDSDTHTVETLQSSKKDFVVVKPRLEGFQVVVDTATQHSF 60
           +Q KI  L+ +RDELKS     +     E+LQ S +  V+V+P L G +VV+ T  +   
Sbjct: 127 LQKKILKLSGRRDELKSSSNSYASRSVPESLQDSSEHSVMVRPCLAGVEVVISTCLRQGL 186

Query: 61  PLSMILKSLLTQNLEIISCITTKINGSL 89
            LS +L+ +L + L +++CI+TK+N SL
Sbjct: 187 NLSSVLEVILAEGLSVVTCISTKVNESL 214

[Close]
BLAST of CmoCh15G012440 vs. TrEMBL
Match: A0A067JRT1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20704 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-06
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 1 

Query: 1   MQAKIQMLTNKRDELKSLFKDDSDTHTVETLQSS-KKDFVVVKPRLEGFQVVVDTATQHS 60
           ++ KIQ L   +DEL+ L    S T     L+SS ++D + VKP L G +VV+DT  + S
Sbjct: 118 LEDKIQAL---KDELRELSNSSSTTSKDNILESSDERDALTVKPCLVGVEVVIDTGLRKS 177

Query: 61  FPLSMILKSLLTQNLEIISCITTKI 85
           FPLS +L+ L+ + L I+SC +TK+
Sbjct: 178 FPLSGVLQVLIEEGLSIVSCSSTKV 199

[Close]
BLAST of CmoCh15G012440 vs. NCBI nr
Match: gi|700194987|gb|KGN50164.1| (hypothetical protein Csa_5G157230 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 6.0e-15
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 1 

Query: 1   MQAKIQMLTNKRDELKSLFKDDSDTH---TVETLQSSKKDFVVVKPR-LEGFQVVVDTAT 60
           MQ KIQML NKRDELK   +D  D+    T+ETL SSK+D V+V PR   G Q+++DTAT
Sbjct: 131 MQTKIQMLRNKRDELKKNIEDGEDSRNITTIETLNSSKRDSVLVMPRSCGGVQILLDTAT 190

Query: 61  QHSFPLSMILKSLLTQNLEIISCITTKIN 86
            H  PLS ++K L+TQNL+IISC +T+ N
Sbjct: 191 HHRLPLSNLIKFLITQNLQIISCHSTRKN 219

[Close]
BLAST of CmoCh15G012440 vs. NCBI nr
Match: gi|821595271|ref|NP_001295841.1| (transcription factor bHLH118-like [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-14
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 1 

Query: 1   MQAKIQMLTNKRDELKSLFKDDSDTH---TVETLQSSKKDFVVVKPR-LEGFQVVVDTAT 60
           MQ KIQML NKRDELK   +D  D+    T+ETL SSK+D V+V PR   G Q+++DTAT
Sbjct: 131 MQTKIQMLRNKRDELKKNIEDGEDSGNITTIETLNSSKRDSVLVMPRSCGGVQILLDTAT 190

Query: 61  QHSFPLSMILKSLLTQNLEIISCITTKIN 86
            H  PLS ++K L+TQNL+IISC +T+ N
Sbjct: 191 HHRLPLSNLIKFLITQNLQIISCHSTRKN 219

[Close]
BLAST of CmoCh15G012440 vs. NCBI nr
Match: gi|659073658|ref|XP_008437182.1| (PREDICTED: transcription factor bHLH36-like isoform X1 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 6.8e-11
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 1 

Query: 1   MQAKIQMLTNKRDELKSLFKDDSDTHTVET--LQSSKKDFVVVKPR--LEGFQVVVDTAT 60
           MQ+KIQ L +KRDELK L  ++ +   VET  L+S+K+D VVV+ R    G QV++DTAT
Sbjct: 132 MQSKIQELCDKRDELKKLQSNNQNPDMVETETLKSTKRDKVVVRARDGSGGIQVILDTAT 191

Query: 61  QHSFPLSMILKSLLTQNLEIISCITTKIN 86
           +H  PLS IL +L  Q LEI+SC + K+N
Sbjct: 192 RHRLPLSNILVALTDQGLEILSCSSNKLN 220

[Close]
BLAST of CmoCh15G012440 vs. NCBI nr
Match: gi|449459720|ref|XP_004147594.1| (PREDICTED: transcription factor bHLH36-like [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-10
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1 

Query: 1   MQAKIQMLTNKRDELKSLFKDDSDTHTVET--LQSSKKDFVVVKPR--LEGFQVVVDTAT 60
           MQ+KIQ L +KRDELK L  ++ +   VET  LQS+K+D VVV+ R    G QV++DT T
Sbjct: 132 MQSKIQELCDKRDELKKLQSNNQNPGMVETETLQSTKRDKVVVRARDGSGGIQVILDTPT 191

Query: 61  QHSFPLSMILKSLLTQNLEIISCITTKIN 86
           QH   LS IL++L+ Q  EI+SC + K+N
Sbjct: 192 QHRLTLSNILEALIDQGFEILSCSSNKLN 220

[Close]
BLAST of CmoCh15G012440 vs. NCBI nr
Match: gi|659073660|ref|XP_008437183.1| (PREDICTED: transcription factor bHLH118-like isoform X2 [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 39/87 (44.83%), Postives = 60/87 (68.97%), Query Frame = 1 

Query: 1   MQAKIQMLTNKRDELKSLFKDDSDT-HTVETLQSSKKDFVVVKPRLE-GFQVVVDTATQH 60
           MQ +IQ L +KRD+L+ L         T ETL SS++D VVV+ +   G QVV+DTAT+H
Sbjct: 132 MQRRIQQLKDKRDKLRELANQTMVIIGTTETLNSSERDSVVVRAKDGIGIQVVLDTATKH 191

Query: 61  SFPLSMILKSLLTQNLEIISCITTKIN 86
             PLS+ +++L+ + LEI++CI+ ++N
Sbjct: 192 RLPLSIFVQALVAEGLEILNCISNRLN 218

The following BLAST results are available for this feature:
BLAST of CmoCh15G012440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh15G012440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMQ4_CUCSA4.2e-1556.18Uncharacterized protein OS=Cucumis sativus GN=Csa_5G157230 PE=4 SV=1[more]
A0A097IYP0_CUCSA7.1e-1556.18BHLH transcription factor OS=Cucumis sativus GN=Csa5G157230 PE=2 SV=1[more]
A0A0A0KKN9_CUCSA1.4e-1050.56Uncharacterized protein OS=Cucumis sativus GN=Csa_5G157220 PE=4 SV=1[more]
A0A061G5T3_THECC1.1e-0738.64Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma ca... [more]
A0A067JRT1_JATCU2.7e-0642.35Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20704 PE=4 SV=1[more]
BLAST of CmoCh15G012440 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh15G012440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194987|gb|KGN50164.1|6.0e-1556.18hypothetical protein Csa_5G157230 [Cucumis sativus][more]
gi|821595271|ref|NP_001295841.1|1.0e-1456.18transcription factor bHLH118-like [Cucumis sativus][more]
gi|659073658|ref|XP_008437182.1|6.8e-1151.69PREDICTED: transcription factor bHLH36-like isoform X1 [Cucumis melo][more]
gi|449459720|ref|XP_004147594.1|2.0e-1050.56PREDICTED: transcription factor bHLH36-like [Cucumis sativus][more]
gi|659073660|ref|XP_008437183.1|1.4e-0844.83PREDICTED: transcription factor bHLH118-like isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G012440.1CmoCh15G012440.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh15G012440Cucsa.302570Cucumber (Gy14) v1cgycmoB0824
CmoCh15G012440Cla011510Watermelon (97103) v1cmowmB267
CmoCh15G012440Csa5G157220Cucumber (Chinese Long) v2cmocuB286
CmoCh15G012440MELO3C005610Melon (DHL92) v3.5.1cmomeB238
CmoCh15G012440ClCG01G003330Watermelon (Charleston Gray)cmowcgB247
CmoCh15G012440CSPI05G06050Wild cucumber (PI 183967)cmocpiB295
CmoCh15G012440Lsi09G003350Bottle gourd (USVL1VR-Ls)cmolsiB255
CmoCh15G012440Cp4.1LG13g02020Cucurbita pepo (Zucchini)cmocpeB268
CmoCh15G012440Cp4.1LG05g03810Cucurbita pepo (Zucchini)cmocpeB292
CmoCh15G012440MELO3C005610.2Melon (DHL92) v3.6.1cmomedB270
CmoCh15G012440CsaV3_5G003410Cucumber (Chinese Long) v3cmocucB0347
CmoCh15G012440Cla97C01G003410Watermelon (97103) v2cmowmbB270
CmoCh15G012440Bhi12G000316Wax gourdcmowgoB0369
CmoCh15G012440CsGy5G003320Cucumber (Gy14) v2cgybcmoB583
CmoCh15G012440Carg16672Silver-seed gourdcarcmoB1252
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh15G012440Cucurbita moschata (Rifu)cmocmoB239
CmoCh15G012440Cucurbita moschata (Rifu)cmocmoB242
CmoCh15G012440Cucurbita moschata (Rifu)cmocmoB250
CmoCh15G012440Cucurbita moschata (Rifu)cmocmoB271
CmoCh15G012440Cucumber (Gy14) v1cgycmoB0702
CmoCh15G012440Cucumber (Gy14) v1cgycmoB0884
CmoCh15G012440Cucurbita maxima (Rimu)cmacmoB287
CmoCh15G012440Cucurbita maxima (Rimu)cmacmoB583
CmoCh15G012440Cucurbita maxima (Rimu)cmacmoB803
CmoCh15G012440Wild cucumber (PI 183967)cmocpiB275
CmoCh15G012440Wild cucumber (PI 183967)cmocpiB276
CmoCh15G012440Wild cucumber (PI 183967)cmocpiB283
CmoCh15G012440Cucumber (Chinese Long) v2cmocuB268
CmoCh15G012440Cucumber (Chinese Long) v2cmocuB269
CmoCh15G012440Melon (DHL92) v3.5.1cmomeB269
CmoCh15G012440Melon (DHL92) v3.5.1cmomeB270
CmoCh15G012440Watermelon (Charleston Gray)cmowcgB235
CmoCh15G012440Watermelon (Charleston Gray)cmowcgB254
CmoCh15G012440Watermelon (97103) v1cmowmB245
CmoCh15G012440Watermelon (97103) v1cmowmB257
CmoCh15G012440Cucurbita pepo (Zucchini)cmocpeB300
CmoCh15G012440Bottle gourd (USVL1VR-Ls)cmolsiB275
CmoCh15G012440Bottle gourd (USVL1VR-Ls)cmolsiB277
CmoCh15G012440Bottle gourd (USVL1VR-Ls)cmolsiB279
CmoCh15G012440Cucumber (Gy14) v2cgybcmoB295
CmoCh15G012440Cucumber (Gy14) v2cgybcmoB296
CmoCh15G012440Cucumber (Gy14) v2cgybcmoB300
CmoCh15G012440Melon (DHL92) v3.6.1cmomedB304
CmoCh15G012440Melon (DHL92) v3.6.1cmomedB305
CmoCh15G012440Silver-seed gourdcarcmoB1169
CmoCh15G012440Silver-seed gourdcarcmoB1230
CmoCh15G012440Cucumber (Chinese Long) v3cmocucB0326
CmoCh15G012440Cucumber (Chinese Long) v3cmocucB0327
CmoCh15G012440Cucumber (Chinese Long) v3cmocucB0331
CmoCh15G012440Watermelon (97103) v2cmowmbB272
CmoCh15G012440Watermelon (97103) v2cmowmbB286
CmoCh15G012440Watermelon (97103) v2cmowmbB293
CmoCh15G012440Watermelon (97103) v2cmowmbB296
CmoCh15G012440Wax gourdcmowgoB0383