CmoCh15G011340 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G011340
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Pectin lyase-like superfamily protein
Location	Cmo_Chr15 : 7883841 .. 7885751 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCGCGTCTAAGTTCGAACACTCTGAAATTTCAGGCCATCAATTGTCGGAAACACTCGGCGTTGCTGACGGAGTTTGGCGGTGTCGGCGACGGAGTAACTTCAAATACTAACGCGTTCCGAAAAGCGATTGAACATCTTAGCACACTTGCGGCGGATGGTGGTGCTCAATTGATCGTGCCGCCGGGGAAATGGCTGACCGGAAGTTTTAATCTGACTAGCCATTTCACACTTTTTATCGATAAAGAAGCAAAAATTCTTGCATCCCAGGTTCGACCTATCGAGTATTTTATTTTTATAAAGCTAACAACTTTGGGAGTGGTGATTTGAATTTTAATTTTTAATCGAAATTAAATGAGTTAAATTTGTTCGTCGTAATTTAATGGTGCAGAAAGAATCAGAGTGGCCACTTGTGGAAGTTCTCCCATCTTATGGGAGGGGAAGAGAGGCTCCGGGTGGACGGTACAACAGCCTCATTTTTGGAACTAATCTCACCGATGTGGTTATCACAGGTGATTATTTTTCTTTTAACATTCTAATTTTTTTAAATGGTTTGCAAAATTATAATCTTATAAGCTTTCTTGCTATCAGAATTAAATAAAAAAAATTTAAGGTAAATGAAAACATAAAAAAAACATTTATAGAAAATAAAGTCGGGTTGGTGACATGGTGTAGGTAACAATGGTACAATCCACGGGCAAGGATCTTCTTGGTGGGAAAAATTTAAGAAAGGGGAGCTCAAGGTAACACGACCGCATGTGATCGAGATCATGTACTCTGATCAAATCCAAATCTCCGATCTCACTTTGATCAACTCACCTTTTTGGTGTGTCCATCCGATTTATAGCAGGTTTGACTATTTCACTTTACTCTCATTATTCTTATATTTTAGGATTATGCTGGAAGAAAAAAAAAATTAAAACTTGTAATAATATACCGTTCAAATCATTCCCAACTAATTTTTTTTTGATATATATATATATATATGTATAGATTTATATTATTATGATTTATTTTTAATTTAGTTTGGTTGGGTTGGGTGAAAATGCAGAAATGTGATTATCCAAGGGCTCACCATCTTAGCTCCCGTCACCGTACCCAACACTGACGGAATCAATCCAGGTTTTCTTCTTCTTCACCTTTAAAACCTCATGGTTCTTTTCTTCGTCAATCCCTCTCCCTAATTCTCTATTCAATTTATCAGATTCTTGTTCCAACATTCGAATCGAAGACTGCTACATTGTCTCCGGTGACGATTGCATCGCCATCAAGAGCGGATGGGACCAATATGGTATCAAGTTCGGAATGCCGACCGAAGACCTTGTCATTCGCCGCCTCACTTGCATCTCACCAGATTCTGCAGGTATCGCCCTTGGTAGCGAAATGTCTGGCGGAATTCGCAACGTCAGGATCGAAAACGTCACTGCAATCAATACACAGTCTGCTGTCAGAATCAAAACTGCTCGCGGACGAGGTGGTTTCGTCAAGGACATTTTCGTCCGAAGAATGTTTCTATCCACGATGAAATACGTCTTCTGGATGACTGGAGACTACAAATCGCATGCAGATGACAAGTTTGATCCCTCGGCATTGCCAGTGATTAAGAACATTAATTATAGAGACGTGGTTGCTGAGAATGTTAATATGTCAGCAAATTTGGCAGGGATATCGGGAGATCCATTCACGGATATTTGTATGTCGAATGTAAAGATTGGATTGTCGAAGAAGCCTAAAAAGTTGCAGTGGAACTGTACGGATGTTGAGGGATTTAGTAGCGATGTGGATCCGCCGCCATGTGCTCCACTGGCTAAAGCAGTGAAAAACGGTGGATGTGACTTTCCCGAGGACAAGCTGCCAATTGAGAATGTTGAGCTGAAGTCATGCTCCGTTGAAATTCCTGCCTTTTAA

mRNA sequence

ATGAATCCGCGTCTAAGTTCGAACACTCTGAAATTTCAGGCCATCAATTGTCGGAAACACTCGGCGTTGCTGACGGAGTTTGGCGGTGTCGGCGACGGAGTAACTTCAAATACTAACGCGTTCCGAAAAGCGATTGAACATCTTAGCACACTTGCGGCGGATGGTGGTGCTCAATTGATCGTGCCGCCGGGGAAATGGCTGACCGGAAGTTTTAATCTGACTAGCCATTTCACACTTTTTATCGATAAAGAAGCAAAAATTCTTGCATCCCAGAAAGAATCAGAGTGGCCACTTGTGGAAGTTCTCCCATCTTATGGGAGGGGAAGAGAGGCTCCGGGTGGACGGTACAACAGCCTCATTTTTGGAACTAATCTCACCGATGTGGTTATCACAGGTAACAATGGTACAATCCACGGGCAAGGATCTTCTTGGTGGGAAAAATTTAAGAAAGGGGAGCTCAAGGTAACACGACCGCATGTGATCGAGATCATGTACTCTGATCAAATCCAAATCTCCGATCTCACTTTGATCAACTCACCTTTTTGAAATGTGATTATCCAAGGGCTCACCATCTTAGCTCCCGTCACCGTACCCAACACTGACGGAATCAATCCAGATTCTTGTTCCAACATTCGAATCGAAGACTGCTACATTGTCTCCGGTGACGATTGCATCGCCATCAAGAGCGGATGGGACCAATATGGTATCAAGTTCGGAATGCCGACCGAAGACCTTGTCATTCGCCGCCTCACTTGCATCTCACCAGATTCTGCAGGTATCGCCCTTGGTAGCGAAATGTCTGGCGGAATTCGCAACGTCAGGATCGAAAACGTCACTGCAATCAATACACAGTCTGCTGTCAGAATCAAAACTGCTCGCGGACGAGGTGGTTTCGTCAAGGACATTTTCGTCCGAAGAATGTTTCTATCCACGATGAAATACGTCTTCTGGATGACTGGAGACTACAAATCGCATGCAGATGACAAGTTTGATCCCTCGGCATTGCCAGTGATTAAGAACATTAATTATAGAGACGTGGTTGCTGAGAATGTTAATATGTCAGCAAATTTGGCAGGGATATCGGGAGATCCATTCACGGATATTTGTATGTCGAATGTAAAGATTGGATTGTCGAAGAAGCCTAAAAAGTTGCAGTGGAACTGTACGGATGTTGAGGGATTTAGTAGCGATGTGGATCCGCCGCCATGTGCTCCACTGGCTAAAGCAGTGAAAAACGGTGGATGTGACTTTCCCGAGGACAAGCTGCCAATTGAGAATGTTGAGCTGAAGTCATGCTCCGTTGAAATTCCTGCCTTTTAA

Coding sequence (CDS)

ATGCCGACCGAAGACCTTGTCATTCGCCGCCTCACTTGCATCTCACCAGATTCTGCAGGTATCGCCCTTGGTAGCGAAATGTCTGGCGGAATTCGCAACGTCAGGATCGAAAACGTCACTGCAATCAATACACAGTCTGCTGTCAGAATCAAAACTGCTCGCGGACGAGGTGGTTTCGTCAAGGACATTTTCGTCCGAAGAATGTTTCTATCCACGATGAAATACGTCTTCTGGATGACTGGAGACTACAAATCGCATGCAGATGACAAGTTTGATCCCTCGGCATTGCCAGTGATTAAGAACATTAATTATAGAGACGTGGTTGCTGAGAATGTTAATATGTCAGCAAATTTGGCAGGGATATCGGGAGATCCATTCACGGATATTTGTATGTCGAATGTAAAGATTGGATTGTCGAAGAAGCCTAAAAAGTTGCAGTGGAACTGTACGGATGTTGAGGGATTTAGTAGCGATGTGGATCCGCCGCCATGTGCTCCACTGGCTAAAGCAGTGAAAAACGGTGGATGTGACTTTCCCGAGGACAAGCTGCCAATTGAGAATGTTGAGCTGAAGTCATGCTCCGTTGAAATTCCTGCCTTTTAA

Homology

[Close]

BLAST of CmoCh15G011340 vs. Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-66
Identity = 124/199 (62.31%), Postives = 151/199 (75.88%), Query Frame = 1


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPT+ LVIRRLTCISP SA IALGSEMSGGI++VR E++ AIN++S +RIKT  GRGG+V
Sbjct: 289 MPTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYV 348

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDI+VR M + TMK+ FWMTG+Y SHAD+ +DP A PVI+ INYRD+VAENV+M+A L G
Sbjct: 349 KDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEG 408

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAK--AVKNGGCDF 180
           I  DPFT IC+SNV I L+ K KK+ W CTDVEG SS V P PC+ L      K   C+F
Sbjct: 409 IPSDPFTGICISNVTIHLAAKAKKVPWTCTDVEGISSGVTPTPCSTLPDQGPEKTSLCNF 468

Query: 181 PEDKLPIENVELKSCSVEI 198
           P + LPI+ VEL+ CS  I
Sbjct: 469 PAESLPIDTVELQKCSYGI 487

[Close]

BLAST of CmoCh15G011340 vs. Swiss-Prot
Match: PGLR_RHIRD (Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.0e-07
Identity = 37/119 (31.09%), Postives = 55/119 (46.22%), Query Frame = 1


Query: 14  ISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKT-ARGRGGFVKDIFVRRMFLST 73
           + P   G+ +GSEMSGG+ +V +E+   I T   +R+KT AR  GG V +I +RR+ L  
Sbjct: 126 MQPGHGGLVIGSEMSGGVHDVTVEDCDMIGTDRGLRLKTGARSGGGMVGNITMRRVLLDG 185

Query: 74  MKYVFWMTGDYKSHADDKFD----------PSALPVIKNINYRDVVAENVNMSANLAGI 122
           ++        Y   AD   D              P +  I   DV   N+   A+ AG+
Sbjct: 186 VQTALSANAHYHCDADGHDDWVQSRNPAPVNDGTPFVDGITVEDVEIRNL---AHAAGV 241

[Close]

BLAST of CmoCh15G011340 vs. TrEMBL
Match: A0A0A0KNF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G140480 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 1.3e-93
Identity = 168/198 (84.85%), Postives = 181/198 (91.41%), Query Frame = 1


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPTEDLVI+RLTCISPDSAG+ALGSEMSGGIRNVRIEN T INTQSAVRIKTARGRGGFV
Sbjct: 282 MPTEDLVIKRLTCISPDSAGVALGSEMSGGIRNVRIENFTGINTQSAVRIKTARGRGGFV 341

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDIFVR M+LSTMKYVFWMTG+YKSH DDKFDP+ALP I NINYRDVVAENV  SA L G
Sbjct: 342 KDIFVRGMYLSTMKYVFWMTGNYKSHPDDKFDPAALPEITNINYRDVVAENVTYSARLEG 401

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 180
           ISGDPFT+IC+SNVKIGL+  PKKLQWNCTDVEGFSSDV PPPCAPLAKA K+GGCDFPE
Sbjct: 402 ISGDPFTNICISNVKIGLTATPKKLQWNCTDVEGFSSDVVPPPCAPLAKAGKSGGCDFPE 461

Query: 181 DKLPIENVELKSCSVEIP 199
           D+LPIE V+LK+C V+ P
Sbjct: 462 DQLPIERVQLKTCFVQNP 479

[Close]

BLAST of CmoCh15G011340 vs. TrEMBL
Match: F6H6C6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g01110 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.8e-75
Identity = 139/194 (71.65%), Postives = 160/194 (82.47%), Query Frame = 1


Query: 1    MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
            MPTEDL+IRRLTCISPDSA IALGSEMSGGI+NVR EN+TAI+++S VRIK+  GRGG+V
Sbjct: 857  MPTEDLIIRRLTCISPDSAVIALGSEMSGGIKNVRAENITAIDSESGVRIKSGVGRGGYV 916

Query: 61   KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
            KDI+ R M + TMKYVFWMTGDY  H DD +DP ALP I+NINYRD+VAENV  SA L G
Sbjct: 917  KDIYARGMTMKTMKYVFWMTGDYGQHPDDGWDPKALPKIENINYRDMVAENVTYSARLDG 976

Query: 121  ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 180
            ISGDPFT IC+SNVKIGL++KPKKLQWNCT+VEG SS V PP C  L  + K   C FPE
Sbjct: 977  ISGDPFTGICISNVKIGLTEKPKKLQWNCTNVEGVSSQVTPPSCDLLHPSKKVFNCPFPE 1036

Query: 181  DKLPIENVELKSCS 195
            DKLPIE+V++K CS
Sbjct: 1037 DKLPIEDVQMKICS 1050

[Close]

BLAST of CmoCh15G011340 vs. TrEMBL
Match: B9RCG6_RICCO (Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1688080 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-73
Identity = 133/196 (67.86%), Postives = 163/196 (83.16%), Query Frame = 1


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPT+ LVIRRLTCISP SA IALGSEMSGGI++VR E++T INT+S VRIKT+ GRGG+V
Sbjct: 279 MPTKQLVIRRLTCISPTSAAIALGSEMSGGIQDVRAEDITCINTESGVRIKTSVGRGGYV 338

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDI+VR+M + TMK+VFWMTG+Y SH D+ +DP+A+PVI+NINYRD+VAENV M+A L G
Sbjct: 339 KDIYVRKMTMHTMKWVFWMTGNYGSHPDNNYDPNAIPVIENINYRDIVAENVTMAARLEG 398

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCA--PLAKAVKNGGCDF 180
           I+GDPFT IC+SNV IGL++KPKKLQWNCTD+ G SS V P PC+  P  +  K   C+F
Sbjct: 399 IAGDPFTGICISNVTIGLAQKPKKLQWNCTDIAGISSGVTPKPCSLLPEQEKEKIADCNF 458

Query: 181 PEDKLPIENVELKSCS 195
           PED LPIEN+E+K CS
Sbjct: 459 PEDSLPIENIEVKMCS 474

[Close]

BLAST of CmoCh15G011340 vs. TrEMBL
Match: B9GKD8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s09790g PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.7e-72
Identity = 134/196 (68.37%), Postives = 164/196 (83.67%), Query Frame = 1


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPT+ LVIRRLTCISP SA IALGSEMSGGI +VR E++TAI+++S VRIKTA GRGG+V
Sbjct: 279 MPTKQLVIRRLTCISPTSAVIALGSEMSGGIEDVRAEDITAIDSESGVRIKTAVGRGGYV 338

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDI+VR M L TMK+VFWMTG+Y SH D+ +DP+A+PVI+NINYRDVVAENV M+A L G
Sbjct: 339 KDIYVRGMTLKTMKWVFWMTGNYGSHPDNNYDPNAIPVIQNINYRDVVAENVTMAAKLEG 398

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCA--PLAKAVKNGGCDF 180
           I+GDPFT IC+SNV IGL++  KKLQWNCTDV G +S+V+P PCA  P     K GGC+F
Sbjct: 399 IAGDPFTGICISNVTIGLAQNSKKLQWNCTDVAGITSEVNPKPCALLPDQGPGKIGGCNF 458

Query: 181 PEDKLPIENVELKSCS 195
           PED LP+EN+E+++CS
Sbjct: 459 PEDSLPVENMEVQTCS 474

[Close]

BLAST of CmoCh15G011340 vs. TrEMBL
Match: B9RIT4_RICCO (Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1582420 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.5e-71
Identity = 134/194 (69.07%), Postives = 157/194 (80.93%), Query Frame = 1


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPT+ LVIRRLTCISPDSA IALGSEMSGGI++VR E++TAINTQS +RIKTA GRG +V
Sbjct: 279 MPTKKLVIRRLTCISPDSATIALGSEMSGGIQDVRAEDITAINTQSGIRIKTAAGRGAYV 338

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDIFVRRM   TMKYVFWMTG Y SH D  +DP+ALP+I  INYRD+VAENV  SA L G
Sbjct: 339 KDIFVRRMNFKTMKYVFWMTGSYGSHPDKGYDPNALPIITRINYRDIVAENVTYSARLEG 398

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 180
           I  DPFT IC+SN  I L+KKP+KLQWNCTD+EG +S+V+P PC+ L    K   C FP+
Sbjct: 399 IEKDPFTGICISNANITLTKKPEKLQWNCTDIEGVTSNVNPRPCSLLPG--KRLECPFPK 458

Query: 181 DKLPIENVELKSCS 195
           D+LPIENV+LK+CS
Sbjct: 459 DRLPIENVKLKTCS 470

[Close]

BLAST of CmoCh15G011340 vs. TAIR10
Match: AT4G23500.1 (AT4G23500.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 266.5 bits (680), Expect = 1.3e-71
Identity = 130/197 (65.99%), Postives = 156/197 (79.19%), Query Frame = 1


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPT+ L+IRRLTCISPDSA IALGSEMSGGI +VR E++ AIN++S +RIKTA GRGG+V
Sbjct: 294 MPTKQLLIRRLTCISPDSAVIALGSEMSGGIEDVRAEDIVAINSESGIRIKTAIGRGGYV 353

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KD++VR M + TMKYVFWMTG Y SH DD +DP ALPVI+NINY+D+VAENV M A LAG
Sbjct: 354 KDVYVRGMTMMTMKYVFWMTGSYGSHPDDHYDPKALPVIQNINYQDMVAENVTMPAQLAG 413

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGG----C 180
           ISGD FT IC+SNV I LSKKPKK+ WNCTDV G++S V P PC  L +  K  G    C
Sbjct: 414 ISGDQFTGICISNVTITLSKKPKKVLWNCTDVSGYTSGVTPQPCQLLPE--KQPGTVVPC 473

Query: 181 DFPEDKLPIENVELKSC 194
           +FPED +PI+ V+L+ C
Sbjct: 474 NFPEDPIPIDEVKLQRC 488

[Close]

BLAST of CmoCh15G011340 vs. TAIR10
Match: AT3G48950.1 (AT3G48950.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 261.5 bits (667), Expect = 4.1e-70
Identity = 129/196 (65.82%), Postives = 152/196 (77.55%), Query Frame = 1


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPT+ L IRRLTCISP SAG+ALGSEMSGGI++VRIE+VT  NT+SA+RIKTA GRG +V
Sbjct: 272 MPTQQLSIRRLTCISPKSAGVALGSEMSGGIKDVRIEDVTLTNTESAIRIKTAVGRGAYV 331

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDI+ RR+ + TMKYVFWM+G+Y SH D+ FDP ALP I NINYRD+ AENV MSA+L G
Sbjct: 332 KDIYARRITMKTMKYVFWMSGNYGSHPDEGFDPKALPEITNINYRDMTAENVTMSASLDG 391

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCA--PLAKA-VKNGGCD 180
           I  DPFT IC+SNV I L+ K KK+QWNCTDV G +S V P PC+  P  KA  KN  C 
Sbjct: 392 IDKDPFTGICISNVTIALAAKAKKMQWNCTDVAGVTSRVTPEPCSLLPEKKAQAKNVDCA 451

Query: 181 FPEDKLPIENVELKSC 194
           FP D +PIE+V LK C
Sbjct: 452 FPSDLIPIESVVLKKC 467

[Close]

BLAST of CmoCh15G011340 vs. TAIR10
Match: AT2G23900.1 (AT2G23900.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 258.8 bits (660), Expect = 2.7e-69
Identity = 123/194 (63.40%), Postives = 144/194 (74.23%), Query Frame = 1


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPT+ L IRRLTCISPDSAGIALGSEMSGGI++VRIE++T + TQSA+RIKTA GRGG+V
Sbjct: 283 MPTQQLSIRRLTCISPDSAGIALGSEMSGGIKDVRIEDITLLQTQSAIRIKTAVGRGGYV 342

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDIF RR  + TMKYVFWM+G Y  H    FDP A+PVI NINYRD+ A+NV   A L G
Sbjct: 343 KDIFARRFTMKTMKYVFWMSGAYNQHPASGFDPKAMPVITNINYRDMTADNVTQPARLDG 402

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 180
              DPFT ICMSN+KI L+ +PKKL WNCT + G SS V P PC+ L +      C FP 
Sbjct: 403 FKNDPFTKICMSNIKIDLAAEPKKLLWNCTSISGVSSKVTPKPCSLLPEKGAPVDCAFPV 462

Query: 181 DKLPIENVELKSCS 195
           DK+PIE+V L  CS
Sbjct: 463 DKIPIESVVLNKCS 476

[Close]

BLAST of CmoCh15G011340 vs. TAIR10
Match: AT3G61490.1 (AT3G61490.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 257.7 bits (657), Expect = 6.0e-69
Identity = 128/205 (62.44%), Postives = 154/205 (75.12%), Query Frame = 1


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPT+ LVIRRLTCISP SA IALGSEMSGGI +VR E++TA  T+S VRIKTA GRG FV
Sbjct: 271 MPTKHLVIRRLTCISPYSAAIALGSEMSGGIEDVRAEDITAYQTESGVRIKTAVGRGAFV 330

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           K+I+V+ M L TMK+VFWMTG+YK+HAD  +DP ALP I  INYRD+VAENV+M+  L G
Sbjct: 331 KNIYVKGMNLHTMKWVFWMTGNYKAHADSHYDPHALPEITGINYRDIVAENVSMAGRLEG 390

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPL--------AKAVK 180
           ISGDPFT IC+SN  I ++ K KK  W C+DVEG +S VDP PC  L         K + 
Sbjct: 391 ISGDPFTGICISNATISMAAKHKKAIWMCSDVEGVTSGVDPKPCDLLDGQESETTKKKMI 450

Query: 181 NGGCDFPEDKLPIENVELKSCSVEI 198
           +GGCDFP D L I+NVELK+CS ++
Sbjct: 451 DGGCDFPTDVLEIDNVELKTCSYQM 475

[Close]

BLAST of CmoCh15G011340 vs. TAIR10
Match: AT3G62110.1 (AT3G62110.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 139.4 bits (350), Expect = 2.4e-33
Identity = 68/180 (37.78%), Postives = 107/180 (59.44%), Query Frame = 1


Query: 2   PTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFVK 61
           P+  + I RLT  +  S+GIA+GSEMSGG+  + I+++   N+ + +RIKT+ GRGG+V+
Sbjct: 270 PSSKIKINRLTGQTTSSSGIAIGSEMSGGVSEIYIKDLHLFNSNTGIRIKTSAGRGGYVR 329

Query: 62  DIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAGI 121
           ++ +  + L  +K     TG Y  H D+K+DP ALP I+ I + +V  + + ++  L GI
Sbjct: 330 NVHILNVKLDNVKKAIRFTGKYGEHPDEKYDPKALPAIEKITFENVNGDGIGVAGLLEGI 389

Query: 122 SGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPP-PCAPLAKAVKNGGCDFPE 181
            GD F +IC  NV + + K  KK  W C++V G+S  V P   C  L +++      FPE
Sbjct: 390 EGDVFKNICFLNVTLRVKKNSKKSPWECSNVRGYSQWVSPEITCDSLKESI------FPE 443

[Close]

BLAST of CmoCh15G011340 vs. NCBI nr
Match: gi|659074299|ref|XP_008437531.1| (PREDICTED: probable polygalacturonase [Cucumis melo])

HSP 1 Score: 351.3 bits (900), Expect = 1.1e-93
Identity = 169/198 (85.35%), Postives = 181/198 (91.41%), Query Frame = 1


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVT INTQSAVRIKTARGRGGFV
Sbjct: 280 MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTGINTQSAVRIKTARGRGGFV 339

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDIFVR M+LSTMKYVFWMTG+YKSH D+KFDP+ALP I NINYRDVVAENV  SA L G
Sbjct: 340 KDIFVRGMYLSTMKYVFWMTGNYKSHPDEKFDPAALPEITNINYRDVVAENVTYSARLEG 399

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 180
           ISGDPFT+IC+SNVKIGL+ KPKKLQWNCTDVEG SSDV PPPCAPLAKA K+GGCDFP 
Sbjct: 400 ISGDPFTNICISNVKIGLTAKPKKLQWNCTDVEGISSDVVPPPCAPLAKAAKSGGCDFPA 459

Query: 181 DKLPIENVELKSCSVEIP 199
           D+LPIE V+LK+C V+ P
Sbjct: 460 DQLPIEKVQLKTCFVQNP 477

[Close]

BLAST of CmoCh15G011340 vs. NCBI nr
Match: gi|778699038|ref|XP_011654644.1| (PREDICTED: probable polygalacturonase [Cucumis sativus])

HSP 1 Score: 350.5 bits (898), Expect = 1.9e-93
Identity = 168/198 (84.85%), Postives = 181/198 (91.41%), Query Frame = 1


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPTEDLVI+RLTCISPDSAG+ALGSEMSGGIRNVRIEN T INTQSAVRIKTARGRGGFV
Sbjct: 282 MPTEDLVIKRLTCISPDSAGVALGSEMSGGIRNVRIENFTGINTQSAVRIKTARGRGGFV 341

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDIFVR M+LSTMKYVFWMTG+YKSH DDKFDP+ALP I NINYRDVVAENV  SA L G
Sbjct: 342 KDIFVRGMYLSTMKYVFWMTGNYKSHPDDKFDPAALPEITNINYRDVVAENVTYSARLEG 401

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 180
           ISGDPFT+IC+SNVKIGL+  PKKLQWNCTDVEGFSSDV PPPCAPLAKA K+GGCDFPE
Sbjct: 402 ISGDPFTNICISNVKIGLTATPKKLQWNCTDVEGFSSDVVPPPCAPLAKAGKSGGCDFPE 461

Query: 181 DKLPIENVELKSCSVEIP 199
           D+LPIE V+LK+C V+ P
Sbjct: 462 DQLPIERVQLKTCFVQNP 479

[Close]

BLAST of CmoCh15G011340 vs. NCBI nr
Match: gi|359490609|ref|XP_002273177.2| (PREDICTED: probable polygalacturonase [Vitis vinifera])

HSP 1 Score: 289.7 bits (740), Expect = 4.0e-75
Identity = 139/194 (71.65%), Postives = 160/194 (82.47%), Query Frame = 1


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPTEDL+IRRLTCISPDSA IALGSEMSGGI+NVR EN+TAI+++S VRIK+  GRGG+V
Sbjct: 271 MPTEDLIIRRLTCISPDSAVIALGSEMSGGIKNVRAENITAIDSESGVRIKSGVGRGGYV 330

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDI+ R M + TMKYVFWMTGDY  H DD +DP ALP I+NINYRD+VAENV  SA L G
Sbjct: 331 KDIYARGMTMKTMKYVFWMTGDYGQHPDDGWDPKALPKIENINYRDMVAENVTYSARLDG 390

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 180
           ISGDPFT IC+SNVKIGL++KPKKLQWNCT+VEG SS V PP C  L  + K   C FPE
Sbjct: 391 ISGDPFTGICISNVKIGLTEKPKKLQWNCTNVEGVSSQVTPPSCDLLHPSKKVFNCPFPE 450

Query: 181 DKLPIENVELKSCS 195
           DKLPIE+V++K CS
Sbjct: 451 DKLPIEDVQMKICS 464

[Close]

BLAST of CmoCh15G011340 vs. NCBI nr
Match: gi|743852758|ref|XP_011029346.1| (PREDICTED: probable polygalacturonase [Populus euphratica])

HSP 1 Score: 285.8 bits (730), Expect = 5.8e-74
Identity = 137/196 (69.90%), Postives = 165/196 (84.18%), Query Frame = 1


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPT+ LVIRRLTCISP SA IALGSEMSGGI +VR E++TAI+++S VRIKTA GRGG+V
Sbjct: 279 MPTKQLVIRRLTCISPTSAVIALGSEMSGGIEDVRAEDITAIDSESGVRIKTAVGRGGYV 338

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDI+VR M L TMK+VFWMTG+Y SH DD +DP+A+PVI+NINYRDVVAENV M+A L G
Sbjct: 339 KDIYVRGMTLKTMKWVFWMTGNYGSHPDDNYDPNAIPVIQNINYRDVVAENVTMAAKLEG 398

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAK--AVKNGGCDF 180
           I+GDPFT IC+SNV IGL++  KKLQWNCTDV G +S+V+P PCA LA     K GGCDF
Sbjct: 399 IAGDPFTGICISNVTIGLAQNSKKLQWNCTDVAGITSEVNPKPCALLADQGPGKIGGCDF 458

Query: 181 PEDKLPIENVELKSCS 195
           PED LP+EN+E+++CS
Sbjct: 459 PEDSLPVENMEVQTCS 474

[Close]

BLAST of CmoCh15G011340 vs. NCBI nr
Match: gi|255537567|ref|XP_002509850.1| (PREDICTED: probable polygalacturonase [Ricinus communis])

HSP 1 Score: 284.3 bits (726), Expect = 1.7e-73
Identity = 133/196 (67.86%), Postives = 163/196 (83.16%), Query Frame = 1


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPT+ LVIRRLTCISP SA IALGSEMSGGI++VR E++T INT+S VRIKT+ GRGG+V
Sbjct: 279 MPTKQLVIRRLTCISPTSAAIALGSEMSGGIQDVRAEDITCINTESGVRIKTSVGRGGYV 338

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDI+VR+M + TMK+VFWMTG+Y SH D+ +DP+A+PVI+NINYRD+VAENV M+A L G
Sbjct: 339 KDIYVRKMTMHTMKWVFWMTGNYGSHPDNNYDPNAIPVIENINYRDIVAENVTMAARLEG 398

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCA--PLAKAVKNGGCDF 180
           I+GDPFT IC+SNV IGL++KPKKLQWNCTD+ G SS V P PC+  P  +  K   C+F
Sbjct: 399 IAGDPFTGICISNVTIGLAQKPKKLQWNCTDIAGISSGVTPKPCSLLPEQEKEKIADCNF 458

Query: 181 PEDKLPIENVELKSCS 195
           PED LPIEN+E+K CS
Sbjct: 459 PEDSLPIENIEVKMCS 474

The following BLAST results are available for this feature:

BLAST of CmoCh15G011340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PGLR_VITVI	1.5e-66	62.31	Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1	[more]
PGLR_RHIRD	8.0e-07	31.09	Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1	[more]

BLAST of CmoCh15G011340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNF9_CUCSA	1.3e-93	84.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G140480 PE=3 SV=1	[more]
F6H6C6_VITVI	2.8e-75	71.65	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g01110 PE=3 SV=...	[more]
B9RCG6_RICCO	1.2e-73	67.86	Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1688080 PE=3 SV=1	[more]
B9GKD8_POPTR	1.7e-72	68.37	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s09790g PE=3 SV=1	[more]
B9RIT4_RICCO	2.5e-71	69.07	Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1582420 PE=3 SV=1	[more]

BLAST of CmoCh15G011340 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23500.1	1.3e-71	65.99	Pectin lyase-like superfamily protein	[more]
AT3G48950.1	4.1e-70	65.82	Pectin lyase-like superfamily protein	[more]
AT2G23900.1	2.7e-69	63.40	Pectin lyase-like superfamily protein	[more]
AT3G61490.1	6.0e-69	62.44	Pectin lyase-like superfamily protein	[more]
AT3G62110.1	2.4e-33	37.78	Pectin lyase-like superfamily protein	[more]

BLAST of CmoCh15G011340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074299\|ref\|XP_008437531.1\|	1.1e-93	85.35	PREDICTED: probable polygalacturonase [Cucumis melo]	[more]
gi\|778699038\|ref\|XP_011654644.1\|	1.9e-93	84.85	PREDICTED: probable polygalacturonase [Cucumis sativus]	[more]
gi\|359490609\|ref\|XP_002273177.2\|	4.0e-75	71.65	PREDICTED: probable polygalacturonase [Vitis vinifera]	[more]
gi\|743852758\|ref\|XP_011029346.1\|	5.8e-74	69.90	PREDICTED: probable polygalacturonase [Populus euphratica]	[more]
gi\|255537567\|ref\|XP_002509850.1\|	1.7e-73	67.86	PREDICTED: probable polygalacturonase [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000743	Glyco_hydro_28
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0004650	polygalacturonase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071555	cell wall organization
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0004650	polygalacturonase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G011340.1	CmoCh15G011340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 19..153 score: 5.0
IPR011050	Pectin lyase fold/virulence factor	unknown	SSF51126	Pectin lyase-like	coord: 3..190 score: 7.02
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 5..158 score: 3.8
None	No IPR available	PANTHER	PTHR31339	FAMILY NOT NAMED	coord: 1..196 score: 3.8E
None	No IPR available	PANTHER	PTHR31339:SF7	POLYGALACTURONASE-RELATED	coord: 1..196 score: 3.8E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G011340	Melon (DHL92) v3.6.1	cmomedB278
CmoCh15G011340	Melon (DHL92) v3.6.1	cmomedB308
CmoCh15G011340	Silver-seed gourd	carcmoB0964
CmoCh15G011340	Silver-seed gourd	carcmoB1325
CmoCh15G011340	Cucumber (Chinese Long) v3	cmocucB0338
CmoCh15G011340	Watermelon (97103) v2	cmowmbB266
CmoCh15G011340	Wax gourd	cmowgoB0361
CmoCh15G011340	Cucurbita moschata (Rifu)	cmocmoB236
CmoCh15G011340	Cucurbita moschata (Rifu)	cmocmoB243
CmoCh15G011340	Cucurbita moschata (Rifu)	cmocmoB251
CmoCh15G011340	Cucumber (Gy14) v1	cgycmoB0561
CmoCh15G011340	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G011340	Cucurbita maxima (Rimu)	cmacmoB403
CmoCh15G011340	Cucurbita maxima (Rimu)	cmacmoB584
CmoCh15G011340	Wild cucumber (PI 183967)	cmocpiB288
CmoCh15G011340	Cucumber (Chinese Long) v2	cmocuB279
CmoCh15G011340	Melon (DHL92) v3.5.1	cmomeB246
CmoCh15G011340	Watermelon (Charleston Gray)	cmowcgB243
CmoCh15G011340	Watermelon (Charleston Gray)	cmowcgB256
CmoCh15G011340	Watermelon (97103) v1	cmowmB260
CmoCh15G011340	Watermelon (97103) v1	cmowmB262
CmoCh15G011340	Cucurbita pepo (Zucchini)	cmocpeB270
CmoCh15G011340	Cucurbita pepo (Zucchini)	cmocpeB264
CmoCh15G011340	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G011340	Cucurbita pepo (Zucchini)	cmocpeB293
CmoCh15G011340	Bottle gourd (USVL1VR-Ls)	cmolsiB249
CmoCh15G011340	Cucumber (Gy14) v2	cgybcmoB463
CmoCh15G011340	Cucumber (Gy14) v2	cgybcmoB575