CmoCh15G011110 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G011110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Location	Cmo_Chr15 : 7604404 .. 7605003 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCCCCTGAGCTAGCCGAATTGAGTAAACAACTAGATGAGTTGTTGACGGCAGGATTCATCCGCCCGATAAAGGTGCCTTATAGATCCCCCGTACTATTTCAGAAAAAGAAGGATGGGACGTTGCTTCTGTGCATAGATTATAGAGCCTTAAACAAGATGACGGTACACAACAAATACCCACTGCCAATAATATCCGACTTGTTTGACCAACTTCACGGGGCCAAATACTTCACGAAGTTGGACTTACGATCAGGGTACTACCAAGTACGTATCGCCGAAGGGGACGAACCCAAGACAAAGTGTGTAACAAGATATGGGGCCTTTGAGTTCCTGGTAATGCCCTTTCGCTTGACAAACGCCCCAGCTACGTTTTGCACGTTAATGAACCAGATTTTCTACAAATACTTGGATCAGTTCGTCGTAGTATACCTCAACAACATAGTTGTATACAGCACAGCCTTAGAGGAACACAAGGTGCACCTGAAGCTAGTATTTGACAAGCTGTGTCAAAATCAGTTGTACGTCAAGAAAGAAAAATGTGCTCTCGCACAAACATGTATCAACTTCCTTGGACATGTCATCAGTTGTGGATAG

mRNA sequence

ATGGCTCCCCCTGAGCTAGCCGAATTGAGTAAACAACTAGATGAGTTGTTGACGGCAGGATTCATCCGCCCGATAAAGGTGCCTTATAGATCCCCCGTACTATTTCAGAAAAAGAAGGATGGGACGTTGCTTCTGTGCATAGATTATAGAGCCTTAAACAAGATGACGGTACACAACAAATACCCACTGCCAATAATATCCGACTTGTTTGACCAACTTCACGGGGCCAAATACTTCACGAAGTTGGACTTACGATCAGGGTACTACCAAGTACGTATCGCCGAAGGGGACGAACCCAAGACAAAGTGTGTAACAAGATATGGGGCCTTTGAGTTCCTGGTAATGCCCTTTCGCTTGACAAACGCCCCAGCTACGTTTTGCACGTTAATGAACCAGATTTTCTACAAATACTTGGATCAGTTCGTCGTAGTATACCTCAACAACATAGTTGTATACAGCACAGCCTTAGAGGAACACAAGGTGCACCTGAAGCTAGTATTTGACAAGCTGTGTCAAAATCAGTTGTACGTCAAGAAAGAAAAATGTGCTCTCGCACAAACATGTATCAACTTCCTTGGACATGTCATCAGTTGTGGATAG

Coding sequence (CDS)

ATGGCTCCCCCTGAGCTAGCCGAATTGAGTAAACAACTAGATGAGTTGTTGACGGCAGGATTCATCCGCCCGATAAAGGTGCCTTATAGATCCCCCGTACTATTTCAGAAAAAGAAGGATGGGACGTTGCTTCTGTGCATAGATTATAGAGCCTTAAACAAGATGACGGTACACAACAAATACCCACTGCCAATAATATCCGACTTGTTTGACCAACTTCACGGGGCCAAATACTTCACGAAGTTGGACTTACGATCAGGGTACTACCAAGTACGTATCGCCGAAGGGGACGAACCCAAGACAAAGTGTGTAACAAGATATGGGGCCTTTGAGTTCCTGGTAATGCCCTTTCGCTTGACAAACGCCCCAGCTACGTTTTGCACGTTAATGAACCAGATTTTCTACAAATACTTGGATCAGTTCGTCGTAGTATACCTCAACAACATAGTTGTATACAGCACAGCCTTAGAGGAACACAAGGTGCACCTGAAGCTAGTATTTGACAAGCTGTGTCAAAATCAGTTGTACGTCAAGAAAGAAAAATGTGCTCTCGCACAAACATGTATCAACTTCCTTGGACATGTCATCAGTTGTGGATAG

Homology

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BLAST of CmoCh15G011110 vs. Swiss-Prot
Match: RRPO_OENBE (RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.6e-44
Identity = 86/128 (67.19%), Postives = 105/128 (82.03%), Query Frame = 1


Query: 42  TLLLCIDYRALNKMTVHNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKT 101
           +L +CIDYRAL K+T+ NKYP+P + DLFD+L  A +FTKLDLRSGY+QVRIA+GDEPKT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 102 KCVTRYGAFEFLVMPFRLTNAPATFCTLMNQIFYKYLDQFVVVYLNNIVV---YSTALEE 161
            CVTRYG+FEF VMPF LTNA ATFC LMN + Y+YLD FVVVYL+++VV   YS +L E
Sbjct: 65  TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHE 124

Query: 162 HKVHLKLV 167
           H  HL++V
Sbjct: 125 HIKHLRVV 132

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BLAST of CmoCh15G011110 vs. Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 158.3 bits (399), Expect = 8.7e-38
Identity = 85/189 (44.97%), Postives = 115/189 (60.85%), Query Frame = 1


Query: 8   ELSKQLDELLTAGFIRPIKVPYRSPVLFQKKKDGTLLLCIDYRALNKMTVHNKYPLPIIS 67
           E++K + +LL   FI P K P  SPV+   KKDGT  LC+DYR LNK T+ + +PLP I 
Sbjct: 637 EINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRID 696

Query: 68  DLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTKCVTRYGAFEFLVMPFRLTNAPATFC 127
           +L  ++  A+ FT LDL SGY+Q+ +   D  KT  VT  G +E+ VMPF L NAP+TF 
Sbjct: 697 NLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFA 756

Query: 128 TLMNQIFYKYLDQFVVVYLNNIVVYSTALEEHKVHLKLVFDKLCQNQLYVKKEKCALAQT 187
             M   F     +FV VYL++I+++S + EEH  HL  V ++L    L VKK+KC  A  
Sbjct: 757 RYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASE 816

Query: 188 CINFLGHVI 197
              FLG+ I
Sbjct: 817 ETEFLGYSI 823

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BLAST of CmoCh15G011110 vs. Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 158.3 bits (399), Expect = 8.7e-38
Identity = 85/189 (44.97%), Postives = 115/189 (60.85%), Query Frame = 1


Query: 8   ELSKQLDELLTAGFIRPIKVPYRSPVLFQKKKDGTLLLCIDYRALNKMTVHNKYPLPIIS 67
           E++K + +LL   FI P K P  SPV+   KKDGT  LC+DYR LNK T+ + +PLP I 
Sbjct: 611 EINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRID 670

Query: 68  DLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTKCVTRYGAFEFLVMPFRLTNAPATFC 127
           +L  ++  A+ FT LDL SGY+Q+ +   D  KT  VT  G +E+ VMPF L NAP+TF 
Sbjct: 671 NLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFA 730

Query: 128 TLMNQIFYKYLDQFVVVYLNNIVVYSTALEEHKVHLKLVFDKLCQNQLYVKKEKCALAQT 187
             M   F     +FV VYL++I+++S + EEH  HL  V ++L    L VKK+KC  A  
Sbjct: 731 RYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASE 790

Query: 188 CINFLGHVI 197
              FLG+ I
Sbjct: 791 ETEFLGYSI 797

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BLAST of CmoCh15G011110 vs. Swiss-Prot
Match: TF211_SCHPO (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.5e-34
Identity = 74/197 (37.56%), Postives = 118/197 (59.90%), Query Frame = 1


Query: 1   MAPPELAELSKQLDELLTAGFIRPIKVPYRSPVLFQKKKDGTLLLCIDYRALNKMTVHNK 60
           + P ++  ++ ++++ L +G IR  K     PV+F  KK+GTL + +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTKCVTRYGAFEFLVMPFRLT 120
           YPLP+I  L  ++ G+  FTKLDL+S Y+ +R+ +GDE K       G FE+LVMP+ ++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPATFCTLMNQIFYKYLDQFVVVYLNNIVVYSTALEEHKVHLKLVFDKLCQNQLYVKKE 180
            APA F   +N I  +  +  VV Y++NI+++S +  EH  H+K V  KL    L + + 
Sbjct: 540 IAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCALAQTCINFLGHVIS 198
           KC   Q+ + F+G+ IS
Sbjct: 600 KCEFHQSQVKFIGYHIS 616

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BLAST of CmoCh15G011110 vs. Swiss-Prot
Match: TF27_SCHPO (Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-7 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.5e-34
Identity = 74/197 (37.56%), Postives = 118/197 (59.90%), Query Frame = 1


Query: 1   MAPPELAELSKQLDELLTAGFIRPIKVPYRSPVLFQKKKDGTLLLCIDYRALNKMTVHNK 60
           + P ++  ++ ++++ L +G IR  K     PV+F  KK+GTL + +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTKCVTRYGAFEFLVMPFRLT 120
           YPLP+I  L  ++ G+  FTKLDL+S Y+ +R+ +GDE K       G FE+LVMP+ ++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPATFCTLMNQIFYKYLDQFVVVYLNNIVVYSTALEEHKVHLKLVFDKLCQNQLYVKKE 180
            APA F   +N I  +  +  VV Y++NI+++S +  EH  H+K V  KL    L + + 
Sbjct: 540 IAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCALAQTCINFLGHVIS 198
           KC   Q+ + F+G+ IS
Sbjct: 600 KCEFHQSQVKFIGYHIS 616

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BLAST of CmoCh15G011110 vs. TrEMBL
Match: K4BL15_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 5.8e-81
Identity = 150/199 (75.38%), Postives = 170/199 (85.43%), Query Frame = 1


Query: 1   MAPPELAELSKQLDELLTAGFIRPIKVPYRSPVLFQKKKDGTLLLCIDYRALNKMTVHNK 60
           MAPPEL EL KQL ELL AG IRP K PY +PVLFQKKKDG++ LCIDYRALNK+T+ NK
Sbjct: 18  MAPPELEELRKQLKELLEAGHIRPSKAPYGAPVLFQKKKDGSMRLCIDYRALNKITIRNK 77

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTKCVTRYGAFEFLVMPFRLT 120
           YP+P+I+DLFD+L  AKYFTK+DLR GYYQVRIAEGDEPKT CVTRYGAFE+LVMPF LT
Sbjct: 78  YPIPLIADLFDRLGEAKYFTKMDLRKGYYQVRIAEGDEPKTACVTRYGAFEWLVMPFGLT 137

Query: 121 NAPATFCTLMNQIFYKYLDQFVVVYLNNIVVYSTALEEHKVHLKLVFDKLCQNQLYVKKE 180
           NAPATFCTLMN+I + YLDQFVVVYL++IVVYS+ L+EH  HLK VF  L +NQLYVK+E
Sbjct: 138 NAPATFCTLMNEILHPYLDQFVVVYLDDIVVYSSTLQEHVEHLKKVFKVLRENQLYVKRE 197

Query: 181 KCALAQTCINFLGHVISCG 200
           KC  AQ  I+FLGHVIS G
Sbjct: 198 KCEFAQPKIHFLGHVISQG 216

[Close]

BLAST of CmoCh15G011110 vs. TrEMBL
Match: A5AZ16_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016761 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.9e-79
Identity = 146/199 (73.37%), Postives = 171/199 (85.93%), Query Frame = 1


Query: 1   MAPPELAELSKQLDELLTAGFIRPIKVPYRSPVLFQKKKDGTLLLCIDYRALNKMTVHNK 60
           MAPPEL EL +QL ELL AGFI+P K PY +PVLFQKK DG+L +CIDYRALNK+TV NK
Sbjct: 602 MAPPELEELRRQLKELLDAGFIQPSKAPYGAPVLFQKKHDGSLRMCIDYRALNKVTVKNK 661

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTKCVTRYGAFEFLVMPFRLT 120
           YP+P+I+DLFDQL  AKYFTKLDLRSGYYQVRIAEGDEPKT CVTRYG++EFLVMPF LT
Sbjct: 662 YPIPLIADLFDQLGRAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGSYEFLVMPFGLT 721

Query: 121 NAPATFCTLMNQIFYKYLDQFVVVYLNNIVVYSTALEEHKVHLKLVFDKLCQNQLYVKKE 180
           NAPATFCTLMN+IF+ YLD+FVVVYL++IV+YS  L+EH+ HL+ VF  L QN+LYVKKE
Sbjct: 722 NAPATFCTLMNKIFHPYLDKFVVVYLDDIVIYSNTLKEHEEHLRKVFKILRQNELYVKKE 781

Query: 181 KCALAQTCINFLGHVISCG 200
           KC+ A+  ++FLGH I  G
Sbjct: 782 KCSFAKEEVSFLGHRIRDG 800

[Close]

BLAST of CmoCh15G011110 vs. TrEMBL
Match: A5BX03_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 5.4e-79
Identity = 145/199 (72.86%), Postives = 170/199 (85.43%), Query Frame = 1


Query: 1   MAPPELAELSKQLDELLTAGFIRPIKVPYRSPVLFQKKKDGTLLLCIDYRALNKMTVHNK 60
           MAPPEL EL +QL ELL AGFI+P K PY +PVLFQKK DG+L +CIDYRALNK+TV NK
Sbjct: 640 MAPPELEELRRQLKELLDAGFIQPSKAPYGAPVLFQKKHDGSLRMCIDYRALNKVTVKNK 699

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTKCVTRYGAFEFLVMPFRLT 120
           YP+P+I+DLFDQL  A+YFTKLDLRSGYYQVRIAEGDEPKT CVTRYG++EFLVMPF LT
Sbjct: 700 YPIPLIADLFDQLGRARYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGSYEFLVMPFGLT 759

Query: 121 NAPATFCTLMNQIFYKYLDQFVVVYLNNIVVYSTALEEHKVHLKLVFDKLCQNQLYVKKE 180
           NAPATFCTLMN+IF+ YLD+FVV YL++IV+YS  L+EH+ HL+ VF  L QN+LYVKKE
Sbjct: 760 NAPATFCTLMNKIFHPYLDKFVVXYLDDIVIYSNTLKEHEEHLRKVFKILRQNKLYVKKE 819

Query: 181 KCALAQTCINFLGHVISCG 200
           KC+ A+  +NFLGH I  G
Sbjct: 820 KCSFAKEEVNFLGHRIRDG 838

[Close]

BLAST of CmoCh15G011110 vs. TrEMBL
Match: A5AN22_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021534 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.7e-77
Identity = 145/199 (72.86%), Postives = 168/199 (84.42%), Query Frame = 1


Query: 1   MAPPELAELSKQLDELLTAGFIRPIKVPYRSPVLFQKKKDGTLLLCIDYRALNKMTVHNK 60
           MAPPEL EL +QL ELL AGFI+P KVPY +PVLFQKK DG+L +CIDYRALNK+TV NK
Sbjct: 531 MAPPELEELRRQLKELLDAGFIQPSKVPYGAPVLFQKKHDGSLRMCIDYRALNKVTVKNK 590

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTKCVTRYGAFEFLVMPFRLT 120
           YP+P+I DLFDQL  A+YFTKLDLRSGYYQVRIAEGDEPKT CVTRYG++EFLVMPF LT
Sbjct: 591 YPIPLIVDLFDQLGRARYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGSYEFLVMPFGLT 650

Query: 121 NAPATFCTLMNQIFYKYLDQFVVVYLNNIVVYSTALEEHKVHLKLVFDKLCQNQLYVKKE 180
           NAPATF TLMN IF+ YLD+FVVVYL++IV+YS  L+EH  HL+ VF  L QN+LYVKKE
Sbjct: 651 NAPATFYTLMNNIFHPYLDKFVVVYLDDIVIYSNTLKEHVEHLRKVFKILRQNELYVKKE 710

Query: 181 KCALAQTCINFLGHVISCG 200
           KC+ A+  ++FLGH I  G
Sbjct: 711 KCSFAKEEVSFLGHRIRDG 729

[Close]

BLAST of CmoCh15G011110 vs. TrEMBL
Match: K4D7G0_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.9e-77
Identity = 141/199 (70.85%), Postives = 168/199 (84.42%), Query Frame = 1


Query: 1   MAPPELAELSKQLDELLTAGFIRPIKVPYRSPVLFQKKKDGTLLLCIDYRALNKMTVHNK 60
           MAPPEL EL KQL ELL AG IRP K P+ +PVLFQKKKDGTL LCIDYRALNK+TV NK
Sbjct: 6   MAPPELEELRKQLKELLDAGHIRPSKAPFGAPVLFQKKKDGTLRLCIDYRALNKVTVKNK 65

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTKCVTRYGAFEFLVMPFRLT 120
           YP+P+++DLFD+L  AK FTK+DLR GY+QVRIA+GDEPKT CVTRYGAF++LVMPF LT
Sbjct: 66  YPVPLLADLFDRLGQAKVFTKMDLRRGYHQVRIADGDEPKTACVTRYGAFDWLVMPFGLT 125

Query: 121 NAPATFCTLMNQIFYKYLDQFVVVYLNNIVVYSTALEEHKVHLKLVFDKLCQNQLYVKKE 180
           NAPATFCTLMN++F+ YLDQFVVVYL++I+VYS  +E+H  HL +VF+ L  N+LYVK+E
Sbjct: 126 NAPATFCTLMNRLFHSYLDQFVVVYLDDIIVYSDNMEDHVEHLCIVFEILRNNELYVKRE 185

Query: 181 KCALAQTCINFLGHVISCG 200
           KC+ AQ  + FLGH IS G
Sbjct: 186 KCSFAQPIVRFLGHTISHG 204

[Close]

BLAST of CmoCh15G011110 vs. NCBI nr
Match: gi|659114583|ref|XP_008457127.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis melo])

HSP 1 Score: 335.9 bits (860), Expect = 4.9e-89
Identity = 161/199 (80.90%), Postives = 179/199 (89.95%), Query Frame = 1


Query: 1   MAPPELAELSKQLDELLTAGFIRPIKVPYRSPVLFQKKKDGTLLLCIDYRALNKMTVHNK 60
           MAPPELAEL KQLDELL AGFIRP K PY +PVLFQKKKDG+L LCIDYRALNK+TV NK
Sbjct: 130 MAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 189

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTKCVTRYGAFEFLVMPFRLT 120
           YPLPII+DLFD+LHGAKYF+KLDLRSGYYQVRIAEGDEPKT CVTRYGAFEFLVMPF LT
Sbjct: 190 YPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 249

Query: 121 NAPATFCTLMNQIFYKYLDQFVVVYLNNIVVYSTALEEHKVHLKLVFDKLCQNQLYVKKE 180
           NAPATFCTLMNQ+F++YLD+FVVVYL++IVVYS  +EEH+ HL+ VF KL +NQLYVK+E
Sbjct: 250 NAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSMTMEEHRDHLQKVFQKLKENQLYVKRE 309

Query: 181 KCALAQTCINFLGHVISCG 200
           K + AQ  INFLGHVI CG
Sbjct: 310 KXSFAQERINFLGHVIECG 328

[Close]

BLAST of CmoCh15G011110 vs. NCBI nr
Match: gi|1009175511|ref|XP_015868924.1| (PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba])

HSP 1 Score: 311.2 bits (796), Expect = 1.3e-81
Identity = 148/199 (74.37%), Postives = 171/199 (85.93%), Query Frame = 1


Query: 1    MAPPELAELSKQLDELLTAGFIRPIKVPYRSPVLFQKKKDGTLLLCIDYRALNKMTVHNK 60
            MAPPELAEL KQL ELL AGF+RP K PY +PVLFQKKKDGTL LC+DYRALNK+TV NK
Sbjct: 823  MAPPELAELRKQLGELLEAGFLRPSKAPYGAPVLFQKKKDGTLRLCVDYRALNKVTVRNK 882

Query: 61   YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTKCVTRYGAFEFLVMPFRLT 120
            YP+P+I+DLFDQL GAK+FTKLDLRSGYYQVRIAEGDE KT CVTRYGAFEFLVMPF LT
Sbjct: 883  YPIPLIADLFDQLSGAKFFTKLDLRSGYYQVRIAEGDEEKTTCVTRYGAFEFLVMPFGLT 942

Query: 121  NAPATFCTLMNQIFYKYLDQFVVVYLNNIVVYSTALEEHKVHLKLVFDKLCQNQLYVKKE 180
            NAPATFCTLMNQ+F  +LD+FVVVYL++IV++S  LEEH  H+++V  +L +NQL+VKKE
Sbjct: 943  NAPATFCTLMNQVFRDFLDKFVVVYLDDIVIFSPTLEEHVEHIRMVLQRLRENQLFVKKE 1002

Query: 181  KCALAQTCINFLGHVISCG 200
            KCA  +  I FLGH+I  G
Sbjct: 1003 KCAFGRRQIKFLGHIIEEG 1021

[Close]

BLAST of CmoCh15G011110 vs. NCBI nr
Match: gi|1009161831|ref|XP_015899105.1| (PREDICTED: uncharacterized protein LOC107432471 [Ziziphus jujuba])

HSP 1 Score: 310.1 bits (793), Expect = 2.9e-81
Identity = 147/199 (73.87%), Postives = 170/199 (85.43%), Query Frame = 1


Query: 1   MAPPELAELSKQLDELLTAGFIRPIKVPYRSPVLFQKKKDGTLLLCIDYRALNKMTVHNK 60
           MAPPELAEL KQL ELL AGF+RP K PY +PVLFQKKKDGTL LC+DYRALNK+TV NK
Sbjct: 465 MAPPELAELRKQLGELLEAGFLRPSKAPYGAPVLFQKKKDGTLRLCVDYRALNKVTVRNK 524

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTKCVTRYGAFEFLVMPFRLT 120
           YP+P+I+DLFDQL GAK+FTKLDLRSGYYQVRIAEGDE KT CVTRYGAFEFLVMPF LT
Sbjct: 525 YPIPLIADLFDQLSGAKFFTKLDLRSGYYQVRIAEGDEEKTTCVTRYGAFEFLVMPFELT 584

Query: 121 NAPATFCTLMNQIFYKYLDQFVVVYLNNIVVYSTALEEHKVHLKLVFDKLCQNQLYVKKE 180
           NAPATFCTLMNQ+F  +LD+FVVVYL++IV++   LEEH  H+++V  +L +NQL+VKKE
Sbjct: 585 NAPATFCTLMNQVFRDFLDKFVVVYLDDIVIFRPTLEEHVEHIRMVLQRLRENQLFVKKE 644

Query: 181 KCALAQTCINFLGHVISCG 200
           KCA  +  I FLGH+I  G
Sbjct: 645 KCAFGRRQIKFLGHIIEEG 663

[Close]

BLAST of CmoCh15G011110 vs. NCBI nr
Match: gi|1009181571|ref|XP_015872243.1| (PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba])

HSP 1 Score: 308.9 bits (790), Expect = 6.4e-81
Identity = 147/199 (73.87%), Postives = 170/199 (85.43%), Query Frame = 1


Query: 1   MAPPELAELSKQLDELLTAGFIRPIKVPYRSPVLFQKKKDGTLLLCIDYRALNKMTVHNK 60
           MAPPELAEL KQL ELL AGF+RP K PY +PVLFQKKKDG L LC+DYRALNK+TV NK
Sbjct: 536 MAPPELAELRKQLGELLEAGFLRPSKAPYGAPVLFQKKKDGILRLCVDYRALNKVTVRNK 595

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTKCVTRYGAFEFLVMPFRLT 120
           YP+P+I+DLFDQL GAK+FTKLDLRSGYYQVRIAEGDE KT CVTRYGAFEFLVMPF LT
Sbjct: 596 YPIPLIADLFDQLSGAKFFTKLDLRSGYYQVRIAEGDEEKTTCVTRYGAFEFLVMPFGLT 655

Query: 121 NAPATFCTLMNQIFYKYLDQFVVVYLNNIVVYSTALEEHKVHLKLVFDKLCQNQLYVKKE 180
           NAPATFCTLMNQ+F  +LD+FVVVYL++IV++S  LEEH  H+++V  +L +NQL+VKKE
Sbjct: 656 NAPATFCTLMNQVFRDFLDKFVVVYLDDIVIFSPTLEEHVEHIRMVLQRLRENQLFVKKE 715

Query: 181 KCALAQTCINFLGHVISCG 200
           KCA  +  I FLGH+I  G
Sbjct: 716 KCAFGRRQIKFLGHIIEEG 734

[Close]

BLAST of CmoCh15G011110 vs. NCBI nr
Match: gi|147845507|emb|CAN80599.1| (hypothetical protein VITISV_016761 [Vitis vinifera])

HSP 1 Score: 303.5 bits (776), Expect = 2.7e-79
Identity = 146/199 (73.37%), Postives = 171/199 (85.93%), Query Frame = 1


Query: 1   MAPPELAELSKQLDELLTAGFIRPIKVPYRSPVLFQKKKDGTLLLCIDYRALNKMTVHNK 60
           MAPPEL EL +QL ELL AGFI+P K PY +PVLFQKK DG+L +CIDYRALNK+TV NK
Sbjct: 602 MAPPELEELRRQLKELLDAGFIQPSKAPYGAPVLFQKKHDGSLRMCIDYRALNKVTVKNK 661

Query: 61  YPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTKCVTRYGAFEFLVMPFRLT 120
           YP+P+I+DLFDQL  AKYFTKLDLRSGYYQVRIAEGDEPKT CVTRYG++EFLVMPF LT
Sbjct: 662 YPIPLIADLFDQLGRAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGSYEFLVMPFGLT 721

Query: 121 NAPATFCTLMNQIFYKYLDQFVVVYLNNIVVYSTALEEHKVHLKLVFDKLCQNQLYVKKE 180
           NAPATFCTLMN+IF+ YLD+FVVVYL++IV+YS  L+EH+ HL+ VF  L QN+LYVKKE
Sbjct: 722 NAPATFCTLMNKIFHPYLDKFVVVYLDDIVIYSNTLKEHEEHLRKVFKILRQNELYVKKE 781

Query: 181 KCALAQTCINFLGHVISCG 200
           KC+ A+  ++FLGH I  G
Sbjct: 782 KCSFAKEEVSFLGHRIRDG 800

The following BLAST results are available for this feature:

BLAST of CmoCh15G011110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RRPO_OENBE	3.6e-44	67.19	RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1	[more]
YI31B_YEAST	8.7e-38	44.97	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
YG31B_YEAST	8.7e-38	44.97	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
TF211_SCHPO	1.5e-34	37.56	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
TF27_SCHPO	1.5e-34	37.56	Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CmoCh15G011110 vs. TrEMBL


Match Name	E-value	Identity	Description
K4BL15_SOLLC	5.8e-81	75.38	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A5AZ16_VITVI	1.9e-79	73.37	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016761 PE=4 SV=1	[more]
A5BX03_VITVI	5.4e-79	72.86	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1	[more]
A5AN22_VITVI	1.7e-77	72.86	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021534 PE=4 SV=1	[more]
K4D7G0_SOLLC	3.9e-77	70.85	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of CmoCh15G011110 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh15G011110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114583\|ref\|XP_008457127.1\|	4.9e-89	80.90	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis me...	[more]
gi\|1009175511\|ref\|XP_015868924.1\|	1.3e-81	74.37	PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba]	[more]
gi\|1009161831\|ref\|XP_015899105.1\|	2.9e-81	73.87	PREDICTED: uncharacterized protein LOC107432471 [Ziziphus jujuba]	[more]
gi\|1009181571\|ref\|XP_015872243.1\|	6.4e-81	73.87	PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba]	[more]
gi\|147845507\|emb\|CAN80599.1\|	2.7e-79	73.37	hypothetical protein VITISV_016761 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G011110.1	CmoCh15G011110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 44..195 score: 1.1
IPR000477	Reverse transcriptase domain	PROFILE	PS50878	RT_POL	coord: 1..196 score: 9
None	No IPR available	GENE3D	G3DSA:3.10.10.10		coord: 4..117 score: 1.2
None	No IPR available	GENE3D	G3DSA:3.30.70.270		coord: 118..196 score: 7.
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 29..197 score: 1.7
None	No IPR available	PANTHER	PTHR24559:SF201	SUBFAMILY NOT NAMED	coord: 29..197 score: 1.7
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 2..197 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G011110	Cucurbita moschata (Rifu)	cmocmoB193
CmoCh15G011110	Cucurbita moschata (Rifu)	cmocmoB236
CmoCh15G011110	Cucurbita moschata (Rifu)	cmocmoB243
CmoCh15G011110	Cucurbita moschata (Rifu)	cmocmoB251
CmoCh15G011110	Cucumber (Gy14) v1	cgycmoB0600
CmoCh15G011110	Cucumber (Gy14) v1	cgycmoB0703
CmoCh15G011110	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G011110	Cucurbita maxima (Rimu)	cmacmoB319
CmoCh15G011110	Cucurbita maxima (Rimu)	cmacmoB403
CmoCh15G011110	Cucurbita maxima (Rimu)	cmacmoB584
CmoCh15G011110	Wild cucumber (PI 183967)	cmocpiB278
CmoCh15G011110	Wild cucumber (PI 183967)	cmocpiB288
CmoCh15G011110	Cucumber (Chinese Long) v2	cmocuB271
CmoCh15G011110	Cucumber (Chinese Long) v2	cmocuB279
CmoCh15G011110	Melon (DHL92) v3.5.1	cmomeB246
CmoCh15G011110	Watermelon (Charleston Gray)	cmowcgB243
CmoCh15G011110	Watermelon (Charleston Gray)	cmowcgB256
CmoCh15G011110	Watermelon (97103) v1	cmowmB260
CmoCh15G011110	Watermelon (97103) v1	cmowmB262
CmoCh15G011110	Cucurbita pepo (Zucchini)	cmocpeB270
CmoCh15G011110	Cucurbita pepo (Zucchini)	cmocpeB264
CmoCh15G011110	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G011110	Cucurbita pepo (Zucchini)	cmocpeB293
CmoCh15G011110	Bottle gourd (USVL1VR-Ls)	cmolsiB249
CmoCh15G011110	Cucumber (Gy14) v2	cgybcmoB463
CmoCh15G011110	Cucumber (Gy14) v2	cgybcmoB575
CmoCh15G011110	Melon (DHL92) v3.6.1	cmomedB278
CmoCh15G011110	Melon (DHL92) v3.6.1	cmomedB308
CmoCh15G011110	Silver-seed gourd	carcmoB0729
CmoCh15G011110	Silver-seed gourd	carcmoB1325
CmoCh15G011110	Cucumber (Chinese Long) v3	cmocucB0338
CmoCh15G011110	Watermelon (97103) v2	cmowmbB266
CmoCh15G011110	Watermelon (97103) v2	cmowmbB289
CmoCh15G011110	Wax gourd	cmowgoB0384
CmoCh15G011110	Wax gourd	cmowgoB0371