CmoCh15G009600 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G009600
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionZinc finger protein 6
LocationCmo_Chr15 : 4993753 .. 4994355 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCCCTGGAGGAGCATTACCAATCCAAGCAAACCAACAATCCCACTACTCGCTTGAAGCTCTTTGGATTTGACGTCCAAGAAGATCTTGAAGACGATTCCACCCCTACTCCCTCTGCCTCCTCCGACTCCGCCGCCGCTCCCTCCTCCGGCGACCGTAAATACGAGTGCCAGTACTGTTACAGAGAGTTCGCCAACTCCCAAGCCCTCGGCGGCCACCAAAATGCCCACAAGAAAGAGCGCCAGCAGCACAAACGCGCCCAATTACAAGCCTCCCGAAACGCCACCGTTTTTAGAAACCCCATCGTTTCTGCCTTTGCTCCACCGCCTCACCTCCTCCCCTCTGCCGTCCTCACCTCATCATCTTCCTGGCCGCCGGTATATATGCCTCAGGCCCCACCCCAATTCCAGGTCTCCCACGGCTGCGTCTTCACCCCACCGCCGCCACCGCCGCCCTTCTTTTCAACCGGGTCTCGGTCGGCTCACGGGATAGTGGATGGCCCGTCGCTGAGCCGGTTCTCCACCGTGGAGGATGGACCCGGGTTCGATGATGGACCGGGTTTGGATTTGCATCTCAGCCTCGCACCGTCGGCGCCATGA

mRNA sequence

ATGGCGGCCCTGGAGGAGCATTACCAATCCAAGCAAACCAACAATCCCACTACTCGCTTGAAGCTCTTTGGATTTGACGTCCAAGAAGATCTTGAAGACGATTCCACCCCTACTCCCTCTGCCTCCTCCGACTCCGCCGCCGCTCCCTCCTCCGGCGACCGTAAATACGAGTGCCAGTACTGTTACAGAGAGTTCGCCAACTCCCAAGCCCTCGGCGGCCACCAAAATGCCCACAAGAAAGAGCGCCAGCAGCACAAACGCGCCCAATTACAAGCCTCCCGAAACGCCACCGTTTTTAGAAACCCCATCGTTTCTGCCTTTGCTCCACCGCCTCACCTCCTCCCCTCTGCCGTCCTCACCTCATCATCTTCCTGGCCGCCGGTATATATGCCTCAGGCCCCACCCCAATTCCAGGTCTCCCACGGCTGCGTCTTCACCCCACCGCCGCCACCGCCGCCCTTCTTTTCAACCGGGTCTCGGTCGGCTCACGGGATAGTGGATGGCCCGTCGCTGAGCCGGTTCTCCACCGTGGAGGATGGACCCGGGTTCGATGATGGACCGGGTTTGGATTTGCATCTCAGCCTCGCACCGTCGGCGCCATGA

Coding sequence (CDS)

ATGGCGGCCCTGGAGGAGCATTACCAATCCAAGCAAACCAACAATCCCACTACTCGCTTGAAGCTCTTTGGATTTGACGTCCAAGAAGATCTTGAAGACGATTCCACCCCTACTCCCTCTGCCTCCTCCGACTCCGCCGCCGCTCCCTCCTCCGGCGACCGTAAATACGAGTGCCAGTACTGTTACAGAGAGTTCGCCAACTCCCAAGCCCTCGGCGGCCACCAAAATGCCCACAAGAAAGAGCGCCAGCAGCACAAACGCGCCCAATTACAAGCCTCCCGAAACGCCACCGTTTTTAGAAACCCCATCGTTTCTGCCTTTGCTCCACCGCCTCACCTCCTCCCCTCTGCCGTCCTCACCTCATCATCTTCCTGGCCGCCGGTATATATGCCTCAGGCCCCACCCCAATTCCAGGTCTCCCACGGCTGCGTCTTCACCCCACCGCCGCCACCGCCGCCCTTCTTTTCAACCGGGTCTCGGTCGGCTCACGGGATAGTGGATGGCCCGTCGCTGAGCCGGTTCTCCACCGTGGAGGATGGACCCGGGTTCGATGATGGACCGGGTTTGGATTTGCATCTCAGCCTCGCACCGTCGGCGCCATGA
Homology
[Close]
BLAST of CmoCh15G009600 vs. Swiss-Prot
Match: ZFP6_ARATH (Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.7e-20
Identity = 88/204 (43.14%), Postives = 105/204 (51.47%), Query Frame = 1 

Query: 17  TTRLKLFGFDVQEDLEDDSTPTPSASSDSAAAPSSGDRKYECQYCYREFANSQALGGHQN 76
           T+ LKLFG ++   LE  S    S+     +   S  RKYECQYC REFANSQALGGHQN
Sbjct: 5   TSSLKLFGINL---LETTSVQNQSSEPRPGSGSGSESRKYECQYCCREFANSQALGGHQN 64

Query: 77  AHKKERQQHKRAQLQASR------NATVFRNPIVSAFAPPPHLL------PSAVLT-SSS 136
           AHKKERQ  KRAQ+ A+R      N     NP++SAFAP PHLL      P  +L+ SSS
Sbjct: 65  AHKKERQLLKRAQMLATRGLPRHHNFHPHTNPLLSAFAPLPHLLSQPHPPPHMMLSPSSS 124

Query: 137 SWPPVYMPQAPPQFQVS--HGCVFTPPPPPPPFFSTGSRSAHGIVDG-----PSLSRFST 196
           S   +Y      Q  V   HG            +  G  S  G V       P + RF+ 
Sbjct: 125 SSKWLYGEHMSSQNAVGYFHG--------GRGLYGGGMESMAGEVKTHGGSLPEMRRFAG 184

Query: 197 VED---GPGFDDGPGLDLHLSLAP 198
             D   G   ++G GLDLHLSL P
Sbjct: 185 DSDRSSGIKLENGIGLDLHLSLGP 197

[Close]
BLAST of CmoCh15G009600 vs. Swiss-Prot
Match: ZFP5_ARATH (Zinc finger protein 5 OS=Arabidopsis thaliana GN=ZFP5 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.3e-12
Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = 1 

Query: 9   QSKQTNNPTTRLKLFGFD-VQEDLEDDSTPTPSASSDSAAAPSSGDRKYECQYCYREFAN 68
           +S   ++    +KLFGF+ +      + T   S SS +     +  +++ECQYC +EFAN
Sbjct: 12  ESSSGSSSDKTIKLFGFELISGSRTPEITTAESVSSSTNTTSLTVMKRHECQYCGKEFAN 71

Query: 69  SQALGGHQNAHKKERQQHKRAQLQASRNA-----TVFRNPIVSAF 108
           SQALGGHQNAHKKER + KR QLQA R +     T  + PI ++F
Sbjct: 72  SQALGGHQNAHKKERLKKKRLQLQARRASIGYYLTNHQQPITTSF 116

[Close]
BLAST of CmoCh15G009600 vs. Swiss-Prot
Match: GIS2_ARATH (Zinc finger protein GIS2 OS=Arabidopsis thaliana GN=GIS2 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.5e-09
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 20  LKLFGFDVQEDLEDDSTPTPSASSDSAAAPSSGDRKYECQYCYREFANSQALGGHQNAHK 79
           ++LFGF+     E+  +      ++ +    + +++++C YC+R F  SQALGGHQNAHK
Sbjct: 19  IRLFGFEFGASHEESESKDNYNENNESIKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHK 78

Query: 80  KERQQHKRAQLQASRNATVF 100
           +ERQQ KR  L +  NA  F
Sbjct: 79  RERQQTKRFNLHS--NAAAF 96

[Close]
BLAST of CmoCh15G009600 vs. Swiss-Prot
Match: GIS_ARATH (Zinc finger protein GIS OS=Arabidopsis thaliana GN=GIS PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.1e-07
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1 

Query: 28  QEDLEDDSTPTPSASSDSAAAPSSGDRKYECQYCYREFANSQALGGHQNAHKKERQQHKR 87
           +E+ E+D T   S  ++S     S +R++EC YC+R F  SQALGGHQNAHK+ERQ  KR
Sbjct: 67  EEEEEEDQTGDNSTDNNSI----SHNRRFECHYCFRNFPTSQALGGHQNAHKRERQLAKR 122

[Close]
BLAST of CmoCh15G009600 vs. Swiss-Prot
Match: ZFP8_ARATH (Zinc finger protein 8 OS=Arabidopsis thaliana GN=ZFP8 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-07
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1 

Query: 50  SSGDRKYECQYCYREFANSQALGGHQNAHKKERQQHKRAQL 91
           ++ +R++EC YC+R F  SQALGGHQNAHK+ERQ  KR  +
Sbjct: 89  NNNNRRFECHYCFRNFPTSQALGGHQNAHKRERQHAKRGSM 129

[Close]
BLAST of CmoCh15G009600 vs. TrEMBL
Match: A0A0A0KRQ5_CUCSA (Multicellular trichome development C2H2 zinc finger transcription factor OS=Cucumis sativus GN=Gl-3 PE=2 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 8.4e-80
Identity = 163/215 (75.81%), Postives = 178/215 (82.79%), Query Frame = 1 

Query: 1   MAALEEHYQSKQTNN--PTTRLKLFGFDVQEDLEDDSTPTPSASSDSAAAPSSGDRKYEC 60
           MAALE HYQ+KQ NN   TTRLKLFGFDVQEDL+ D + TP++S   AA PSSGDRKYEC
Sbjct: 1   MAALENHYQTKQNNNNPATTRLKLFGFDVQEDLDQDDS-TPTSSDSGAAVPSSGDRKYEC 60

Query: 61  QYCYREFANSQALGGHQNAHKKERQQHKRAQLQASRNATVFRNPIVSAFAPPPHLLPSAV 120
           QYCYREFANSQALGGHQNAHKKERQQ KRAQLQASRNA VFRNPIV+AFAPPPHLLPSA 
Sbjct: 61  QYCYREFANSQALGGHQNAHKKERQQLKRAQLQASRNAAVFRNPIVAAFAPPPHLLPSAA 120

Query: 121 LTSSSSWPPVYMPQAPPQFQVSHGCVFT------------PPPPPPPFFSTGSRSAHGIV 180
           +T+SSSW PVY+P+APPQFQVSHGCVFT            PPP PP FF+ GSRS+HG+V
Sbjct: 121 VTASSSW-PVYIPRAPPQFQVSHGCVFTPSSSYGGGGDAPPPPSPPDFFTMGSRSSHGMV 180

Query: 181 DGP-SLSRFSTVEDGPGFDDGPGLDLHLSLAPSAP 201
           D P SLSRFS V+ G  FDDGPGLDLHLSLAP+AP
Sbjct: 181 DAPMSLSRFSKVDGGTAFDDGPGLDLHLSLAPAAP 213

[Close]
BLAST of CmoCh15G009600 vs. TrEMBL
Match: A0A068TWM2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032659001 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.3e-52
Identity = 136/229 (59.39%), Postives = 148/229 (64.63%), Query Frame = 1 

Query: 1   MAALEEHYQSKQTNNPTTRLKLFGFDVQEDLEDDSTPTPSASSDSAAAPSSGDRKYECQY 60
           MA LE  YQSK +NN   RLKLFGF+V ++ E DST TPS S DS   P+S  RKYECQY
Sbjct: 1   MAELE--YQSKPSNNG--RLKLFGFNVTDEEEVDSTKTPSGSPDSGGFPASDGRKYECQY 60

Query: 61  CYREFANSQALGGHQNAHKKERQQHKRAQLQASRNATV--FRNPIVSAFAPPPHLLP--- 120
           C REFANSQALGGHQNAHKKERQQ KRAQ+QASRNA V   RNPIVSAFAPPPHLL    
Sbjct: 61  CCREFANSQALGGHQNAHKKERQQLKRAQMQASRNAAVSYMRNPIVSAFAPPPHLLAPAG 120

Query: 121 ----SAVLTSSSSWPPVYMPQAPPQFQVSHGCVFTPPPPPPPFFSTGSRSAHGIV----- 180
                A   +S SW  VY+P+A P F VSHGCVF   P        GS S  G V     
Sbjct: 121 SVVVPAAAPASPSW--VYVPRAAPPFHVSHGCVF---PASTTGRGVGSASYAGSVGDSSL 180

Query: 181 ---------------DGPSLSRFSTVEDGPGFDDGPGLDLHLSLAPSAP 201
                          DGPSLSRFS  +DGPGFD+  GLDLHLSLAP+AP
Sbjct: 181 TSVGPQQVKAHNGRHDGPSLSRFSRADDGPGFDEAFGLDLHLSLAPAAP 220

[Close]
BLAST of CmoCh15G009600 vs. TrEMBL
Match: A5BMV3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03780 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 8.2e-51
Identity = 124/221 (56.11%), Postives = 145/221 (65.61%), Query Frame = 1 

Query: 5   EEHYQSKQTNNPTT-RLKLFGFDVQEDLEDDSTPTPSASSDSAAAPSSGDRKYECQYCYR 64
           E  YQ+K T+ PT  RLK+FGF+V ED + +S+ TPS S +S   P++GDRKYECQYC R
Sbjct: 3   EIDYQAKATSAPTNGRLKIFGFNVSEDEDVESSKTPSGSPESGGFPATGDRKYECQYCCR 62

Query: 65  EFANSQALGGHQNAHKKERQQHKRAQLQASRNA--TVFRNPIVSAFAPPPHLL------- 124
           EFANSQALGGHQNAHKKERQQ KRAQ+QA+RNA  +  RNP++SAFAPPPHLL       
Sbjct: 63  EFANSQALGGHQNAHKKERQQLKRAQMQATRNAATSYIRNPMISAFAPPPHLLAPAGPVV 122

Query: 125 -PSAVLTSSSSWPPVYMPQAPPQFQVSHGCVFTPPP--------------PPPPFFSTGS 184
            P+     S+SW  VY+P+ PP F VSHGCVF                        S   
Sbjct: 123 VPAGAAPQSASW--VYVPRGPPPFHVSHGCVFPSSSGRGAATLSYAGGVGESTLTTSAPQ 182

Query: 185 RSAHGIVDGPSLSRFSTVEDGPGFDDGPGLDLHLSLAPSAP 201
             AHG VD PSLSRFS  + GP FDD  GLDLHLSLAP+AP
Sbjct: 183 SRAHGRVDAPSLSRFSRGDGGPTFDDAFGLDLHLSLAPAAP 221

[Close]
BLAST of CmoCh15G009600 vs. TrEMBL
Match: A0A161Y2Z5_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_023643 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.1e-47
Identity = 121/214 (56.54%), Postives = 139/214 (64.95%), Query Frame = 1 

Query: 5   EEHYQSKQTNNPTTRLKLFGFDVQEDLEDD----STPTPSASSDSAAAPSSGDRKYECQY 64
           E  ++  + NN    LKLFGF+V E  EDD    ST TPSASS+S   P++  RKYECQY
Sbjct: 3   EVQFEQSEQNNTNRHLKLFGFNVTELEEDDEADSSTKTPSASSESGGFPTTDGRKYECQY 62

Query: 65  CYREFANSQALGGHQNAHKKERQQHKRAQLQASRNATV--FRNPIVSAFAPPPHLLPSA- 124
           C REFANSQALGGHQNAHKKERQQ KRAQ+QA+RNA V   RNPI+SAF+PP HLL  A 
Sbjct: 63  CCREFANSQALGGHQNAHKKERQQLKRAQMQATRNAAVSYMRNPIISAFSPPHHLLSQAG 122

Query: 125 --VLTSSSSWPPVYMPQAPPQFQVSHGCVFTPPPPPPPF----------FSTGSRSAHGI 184
             +L SS SW  VY+P+A   F+VSHGCVF                    S G +     
Sbjct: 123 PMMLPSSPSW--VYVPRAAAPFEVSHGCVFPSSRGAGALQYASGAGDQSSSVGPQQVRAC 182

Query: 185 VDGPSLSRFSTVEDGPGFDDGPGLDLHLSLAPSA 200
            DGPSLSRFS  + GP FDD  GLDLHLSLAPS+
Sbjct: 183 HDGPSLSRFSRADGGPSFDDAFGLDLHLSLAPSS 214

[Close]
BLAST of CmoCh15G009600 vs. TrEMBL
Match: W9RHN4_9ROSA (Zinc finger protein 6 OS=Morus notabilis GN=L484_015446 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.2e-47
Identity = 132/239 (55.23%), Postives = 141/239 (59.00%), Query Frame = 1 

Query: 13  TNNP-TTRLKLFGFDVQED-----LEDDSTPTPSASSDSAAAPSSGDRKYECQYCYREFA 72
           TNNP TTRLKLFGF VQED     + D +  TPS S +S     +GDRKYECQYC REFA
Sbjct: 20  TNNPSTTRLKLFGFSVQEDDDQPTVVDSAKTTPSGSPESGGFAGAGDRKYECQYCCREFA 79

Query: 73  NSQALGGHQNAHKKERQQHKRAQLQASRNATV--FRNPIVSAFAPPPHLLP-------SA 132
           NSQALGGHQNAHKKERQQ KRAQLQASRNA V   RNPI+SAFAPPPHLL         A
Sbjct: 80  NSQALGGHQNAHKKERQQLKRAQLQASRNAAVSYARNPIISAFAPPPHLLAPAGSVVVPA 139

Query: 133 VLTSSSSWPPVYMPQAPPQFQVSHGCVFTPPPPPPPFFSTGSRS----AHGI-------- 192
              +S SW  VY+P+A P F VSHGCVF PP         G RS    A G         
Sbjct: 140 AAPASPSW--VYVPRAAPPFHVSHGCVF-PPASAGVSGGGGGRSGGAGAGGFSYSGNVGD 199

Query: 193 ------------------------VDGPSLSRFSTVEDGPGFDDGPGLDLHLSLAPSAP 201
                                   VDGPSLSRFS    GP FDD  GLDLHLSLAP+AP
Sbjct: 200 YNHNHHSALTMGSQVQQGRAHSRVVDGPSLSRFSKGNGGPSFDDSLGLDLHLSLAPAAP 255

[Close]
BLAST of CmoCh15G009600 vs. TAIR10
Match: AT1G68360.1 (AT1G68360.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 147.9 bits (372), Expect = 6.7e-36
Identity = 112/244 (45.90%), Postives = 131/244 (53.69%), Query Frame = 1 

Query: 5   EEHYQSKQTNNPTTRLKLFGFDV--QEDLEDDSTPT------------PSASSDSAAAP- 64
           E  + SK T   T+RLKLFGF V  +ED  D S  T            P+ SS  +    
Sbjct: 3   ELDFSSKTT---TSRLKLFGFSVDGEEDFSDQSVKTNLSSVSPERGEFPAGSSGRSGGGV 62

Query: 65  -------SSGDRKYECQYCYREFANSQALGGHQNAHKKERQQHKRAQLQASRNATV---- 124
                    G+RKYECQYC REF NSQALGGHQNAHKKERQQ KRAQLQA+RNA      
Sbjct: 63  RSRGGGGGGGERKYECQYCCREFGNSQALGGHQNAHKKERQQLKRAQLQATRNAAANFSN 122

Query: 125 -------FRNPIVSAFAPPPHLLPSAVLTSSSSWPPVYMPQ-APPQFQVSHGCV------ 184
                   RNPIVSAFAPPPHLL S+ +      P +Y+P+ +P Q  VSHGCV      
Sbjct: 123 AGSASQFLRNPIVSAFAPPPHLLSSSAVPQPMGGPWMYLPRVSPSQLHVSHGCVIQDGSG 182

Query: 185 --------FTPPPPPPPFFSTGSRSAHGIVDG--PSLSRFSTVEDGPGFDDGPGLDLHLS 199
                   +        F   G++  H    G  PS++ FS  E G  FDDG GLDLHLS
Sbjct: 183 GAGAGGFSYEYGARDSGFGVVGAQMRHVQAHGPRPSVNGFSR-EVGTTFDDGLGLDLHLS 242

[Close]
BLAST of CmoCh15G009600 vs. TAIR10
Match: AT1G67030.1 (AT1G67030.1 zinc finger protein 6)

HSP 1 Score: 100.9 bits (250), Expect = 9.3e-22
Identity = 88/204 (43.14%), Postives = 105/204 (51.47%), Query Frame = 1 

Query: 17  TTRLKLFGFDVQEDLEDDSTPTPSASSDSAAAPSSGDRKYECQYCYREFANSQALGGHQN 76
           T+ LKLFG ++   LE  S    S+     +   S  RKYECQYC REFANSQALGGHQN
Sbjct: 5   TSSLKLFGINL---LETTSVQNQSSEPRPGSGSGSESRKYECQYCCREFANSQALGGHQN 64

Query: 77  AHKKERQQHKRAQLQASR------NATVFRNPIVSAFAPPPHLL------PSAVLT-SSS 136
           AHKKERQ  KRAQ+ A+R      N     NP++SAFAP PHLL      P  +L+ SSS
Sbjct: 65  AHKKERQLLKRAQMLATRGLPRHHNFHPHTNPLLSAFAPLPHLLSQPHPPPHMMLSPSSS 124

Query: 137 SWPPVYMPQAPPQFQVS--HGCVFTPPPPPPPFFSTGSRSAHGIVDG-----PSLSRFST 196
           S   +Y      Q  V   HG            +  G  S  G V       P + RF+ 
Sbjct: 125 SSKWLYGEHMSSQNAVGYFHG--------GRGLYGGGMESMAGEVKTHGGSLPEMRRFAG 184

Query: 197 VED---GPGFDDGPGLDLHLSLAP 198
             D   G   ++G GLDLHLSL P
Sbjct: 185 DSDRSSGIKLENGIGLDLHLSLGP 197

[Close]
BLAST of CmoCh15G009600 vs. TAIR10
Match: AT1G10480.1 (AT1G10480.1 zinc finger protein 5)

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-13
Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = 1 

Query: 9   QSKQTNNPTTRLKLFGFD-VQEDLEDDSTPTPSASSDSAAAPSSGDRKYECQYCYREFAN 68
           +S   ++    +KLFGF+ +      + T   S SS +     +  +++ECQYC +EFAN
Sbjct: 12  ESSSGSSSDKTIKLFGFELISGSRTPEITTAESVSSSTNTTSLTVMKRHECQYCGKEFAN 71

Query: 69  SQALGGHQNAHKKERQQHKRAQLQASRNA-----TVFRNPIVSAF 108
           SQALGGHQNAHKKER + KR QLQA R +     T  + PI ++F
Sbjct: 72  SQALGGHQNAHKKERLKKKRLQLQARRASIGYYLTNHQQPITTSF 116

[Close]
BLAST of CmoCh15G009600 vs. TAIR10
Match: AT5G06650.1 (AT5G06650.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 4.8e-10
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 20  LKLFGFDVQEDLEDDSTPTPSASSDSAAAPSSGDRKYECQYCYREFANSQALGGHQNAHK 79
           ++LFGF+     E+  +      ++ +    + +++++C YC+R F  SQALGGHQNAHK
Sbjct: 19  IRLFGFEFGASHEESESKDNYNENNESIKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHK 78

Query: 80  KERQQHKRAQLQASRNATVF 100
           +ERQQ KR  L +  NA  F
Sbjct: 79  RERQQTKRFNLHS--NAAAF 96

[Close]
BLAST of CmoCh15G009600 vs. TAIR10
Match: AT3G58070.1 (AT3G58070.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-08
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1 

Query: 28  QEDLEDDSTPTPSASSDSAAAPSSGDRKYECQYCYREFANSQALGGHQNAHKKERQQHKR 87
           +E+ E+D T   S  ++S     S +R++EC YC+R F  SQALGGHQNAHK+ERQ  KR
Sbjct: 67  EEEEEEDQTGDNSTDNNSI----SHNRRFECHYCFRNFPTSQALGGHQNAHKRERQLAKR 122

[Close]
BLAST of CmoCh15G009600 vs. NCBI nr
Match: gi|821595291|ref|NP_001295848.1| (zinc finger protein 6-like [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 1.2e-79
Identity = 163/215 (75.81%), Postives = 178/215 (82.79%), Query Frame = 1 

Query: 1   MAALEEHYQSKQTNN--PTTRLKLFGFDVQEDLEDDSTPTPSASSDSAAAPSSGDRKYEC 60
           MAALE HYQ+KQ NN   TTRLKLFGFDVQEDL+ D + TP++S   AA PSSGDRKYEC
Sbjct: 1   MAALENHYQTKQNNNNPATTRLKLFGFDVQEDLDQDDS-TPTSSDSGAAVPSSGDRKYEC 60

Query: 61  QYCYREFANSQALGGHQNAHKKERQQHKRAQLQASRNATVFRNPIVSAFAPPPHLLPSAV 120
           QYCYREFANSQALGGHQNAHKKERQQ KRAQLQASRNA VFRNPIV+AFAPPPHLLPSA 
Sbjct: 61  QYCYREFANSQALGGHQNAHKKERQQLKRAQLQASRNAAVFRNPIVAAFAPPPHLLPSAA 120

Query: 121 LTSSSSWPPVYMPQAPPQFQVSHGCVFT------------PPPPPPPFFSTGSRSAHGIV 180
           +T+SSSW PVY+P+APPQFQVSHGCVFT            PPP PP FF+ GSRS+HG+V
Sbjct: 121 VTASSSW-PVYIPRAPPQFQVSHGCVFTPSSSYGGGGDAPPPPSPPDFFTMGSRSSHGMV 180

Query: 181 DGP-SLSRFSTVEDGPGFDDGPGLDLHLSLAPSAP 201
           D P SLSRFS V+ G  FDDGPGLDLHLSLAP+AP
Sbjct: 181 DAPMSLSRFSKVDGGTAFDDGPGLDLHLSLAPAAP 213

[Close]
BLAST of CmoCh15G009600 vs. NCBI nr
Match: gi|659072978|ref|XP_008467196.1| (PREDICTED: zinc finger protein 6-like [Cucumis melo])

HSP 1 Score: 304.3 bits (778), Expect = 1.6e-79
Identity = 163/216 (75.46%), Postives = 178/216 (82.41%), Query Frame = 1 

Query: 1   MAALEEHYQSKQTNN---PTTRLKLFGFDVQEDLEDDSTPTPSASSDSAAAPSSGDRKYE 60
           MAALE HYQ+KQ NN    TTRLKLFGFDVQEDL+ D + TP++S   AA PSSGDRKYE
Sbjct: 1   MAALENHYQTKQNNNNNPATTRLKLFGFDVQEDLDQDDS-TPTSSDSGAAVPSSGDRKYE 60

Query: 61  CQYCYREFANSQALGGHQNAHKKERQQHKRAQLQASRNATVFRNPIVSAFAPPPHLLPSA 120
           CQYCYREFANSQALGGHQNAHKKERQQ KRAQLQASRNA VFRNPIV+AFAPPPHLLPSA
Sbjct: 61  CQYCYREFANSQALGGHQNAHKKERQQLKRAQLQASRNAAVFRNPIVAAFAPPPHLLPSA 120

Query: 121 VLTSSSSWPPVYMPQAPPQFQVSHGCVFT------------PPPPPPPFFSTGSRSAHGI 180
            +T+SSSW PVY+P+APPQFQVSHGCVFT            PPP PP FF+ GSRS+HG+
Sbjct: 121 AVTASSSW-PVYIPRAPPQFQVSHGCVFTPSSSYGGGGDAPPPPSPPDFFTMGSRSSHGM 180

Query: 181 VDGP-SLSRFSTVEDGPGFDDGPGLDLHLSLAPSAP 201
           VD P SLSRFS V+ G  FDDGPGLDLHLSLAP+AP
Sbjct: 181 VDAPMSLSRFSKVDGGTAFDDGPGLDLHLSLAPAAP 214

[Close]
BLAST of CmoCh15G009600 vs. NCBI nr
Match: gi|661896068|emb|CDP00646.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 213.0 bits (541), Expect = 4.8e-52
Identity = 136/229 (59.39%), Postives = 148/229 (64.63%), Query Frame = 1 

Query: 1   MAALEEHYQSKQTNNPTTRLKLFGFDVQEDLEDDSTPTPSASSDSAAAPSSGDRKYECQY 60
           MA LE  YQSK +NN   RLKLFGF+V ++ E DST TPS S DS   P+S  RKYECQY
Sbjct: 1   MAELE--YQSKPSNNG--RLKLFGFNVTDEEEVDSTKTPSGSPDSGGFPASDGRKYECQY 60

Query: 61  CYREFANSQALGGHQNAHKKERQQHKRAQLQASRNATV--FRNPIVSAFAPPPHLLP--- 120
           C REFANSQALGGHQNAHKKERQQ KRAQ+QASRNA V   RNPIVSAFAPPPHLL    
Sbjct: 61  CCREFANSQALGGHQNAHKKERQQLKRAQMQASRNAAVSYMRNPIVSAFAPPPHLLAPAG 120

Query: 121 ----SAVLTSSSSWPPVYMPQAPPQFQVSHGCVFTPPPPPPPFFSTGSRSAHGIV----- 180
                A   +S SW  VY+P+A P F VSHGCVF   P        GS S  G V     
Sbjct: 121 SVVVPAAAPASPSW--VYVPRAAPPFHVSHGCVF---PASTTGRGVGSASYAGSVGDSSL 180

Query: 181 ---------------DGPSLSRFSTVEDGPGFDDGPGLDLHLSLAPSAP 201
                          DGPSLSRFS  +DGPGFD+  GLDLHLSLAP+AP
Sbjct: 181 TSVGPQQVKAHNGRHDGPSLSRFSRADDGPGFDEAFGLDLHLSLAPAAP 220

[Close]
BLAST of CmoCh15G009600 vs. NCBI nr
Match: gi|731370284|ref|XP_002283623.2| (PREDICTED: zinc finger protein 6 [Vitis vinifera])

HSP 1 Score: 208.4 bits (529), Expect = 1.2e-50
Identity = 124/221 (56.11%), Postives = 145/221 (65.61%), Query Frame = 1 

Query: 5   EEHYQSKQTNNPTT-RLKLFGFDVQEDLEDDSTPTPSASSDSAAAPSSGDRKYECQYCYR 64
           E  YQ+K T+ PT  RLK+FGF+V ED + +S+ TPS S +S   P++GDRKYECQYC R
Sbjct: 42  EIDYQAKATSAPTNGRLKIFGFNVSEDEDVESSKTPSGSPESGGFPATGDRKYECQYCCR 101

Query: 65  EFANSQALGGHQNAHKKERQQHKRAQLQASRNA--TVFRNPIVSAFAPPPHLL------- 124
           EFANSQALGGHQNAHKKERQQ KRAQ+QA+RNA  +  RNP++SAFAPPPHLL       
Sbjct: 102 EFANSQALGGHQNAHKKERQQLKRAQMQATRNAATSYIRNPMISAFAPPPHLLAPAGPVV 161

Query: 125 -PSAVLTSSSSWPPVYMPQAPPQFQVSHGCVFTPPP--------------PPPPFFSTGS 184
            P+     S+SW  VY+P+ PP F VSHGCVF                        S   
Sbjct: 162 VPAGAAPQSASW--VYVPRGPPPFHVSHGCVFPSSSGRGAATLSYAGGVGESTLTTSAPQ 221

Query: 185 RSAHGIVDGPSLSRFSTVEDGPGFDDGPGLDLHLSLAPSAP 201
             AHG VD PSLSRFS  + GP FDD  GLDLHLSLAP+AP
Sbjct: 222 SRAHGRVDAPSLSRFSRGDGGPTFDDAFGLDLHLSLAPAAP 260

[Close]
BLAST of CmoCh15G009600 vs. NCBI nr
Match: gi|147769067|emb|CAN72502.1| (hypothetical protein VITISV_027276 [Vitis vinifera])

HSP 1 Score: 208.4 bits (529), Expect = 1.2e-50
Identity = 124/221 (56.11%), Postives = 145/221 (65.61%), Query Frame = 1 

Query: 5   EEHYQSKQTNNPTT-RLKLFGFDVQEDLEDDSTPTPSASSDSAAAPSSGDRKYECQYCYR 64
           E  YQ+K T+ PT  RLK+FGF+V ED + +S+ TPS S +S   P++GDRKYECQYC R
Sbjct: 3   EIDYQAKATSAPTNGRLKIFGFNVSEDEDVESSKTPSGSPESGGFPATGDRKYECQYCCR 62

Query: 65  EFANSQALGGHQNAHKKERQQHKRAQLQASRNA--TVFRNPIVSAFAPPPHLL------- 124
           EFANSQALGGHQNAHKKERQQ KRAQ+QA+RNA  +  RNP++SAFAPPPHLL       
Sbjct: 63  EFANSQALGGHQNAHKKERQQLKRAQMQATRNAATSYIRNPMISAFAPPPHLLAPAGPVV 122

Query: 125 -PSAVLTSSSSWPPVYMPQAPPQFQVSHGCVFTPPP--------------PPPPFFSTGS 184
            P+     S+SW  VY+P+ PP F VSHGCVF                        S   
Sbjct: 123 VPAGAAPQSASW--VYVPRGPPPFHVSHGCVFPSSSGRGAATLSYAGGVGESTLTTSAPQ 182

Query: 185 RSAHGIVDGPSLSRFSTVEDGPGFDDGPGLDLHLSLAPSAP 201
             AHG VD PSLSRFS  + GP FDD  GLDLHLSLAP+AP
Sbjct: 183 SRAHGRVDAPSLSRFSRGDGGPTFDDAFGLDLHLSLAPAAP 221

The following BLAST results are available for this feature:
BLAST of CmoCh15G009600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ZFP6_ARATH1.7e-2043.14Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1[more]
ZFP5_ARATH6.3e-1242.86Zinc finger protein 5 OS=Arabidopsis thaliana GN=ZFP5 PE=2 SV=1[more]
GIS2_ARATH8.5e-0940.00Zinc finger protein GIS2 OS=Arabidopsis thaliana GN=GIS2 PE=2 SV=1[more]
GIS_ARATH2.1e-0751.67Zinc finger protein GIS OS=Arabidopsis thaliana GN=GIS PE=2 SV=1[more]
ZFP8_ARATH3.6e-0758.54Zinc finger protein 8 OS=Arabidopsis thaliana GN=ZFP8 PE=2 SV=1[more]
BLAST of CmoCh15G009600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRQ5_CUCSA8.4e-8075.81Multicellular trichome development C2H2 zinc finger transcription factor OS=Cucu... [more]
A0A068TWM2_COFCA3.3e-5259.39Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032659001 PE=4 SV=1[more]
A5BMV3_VITVI8.2e-5156.11Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03780 PE=4 SV=... [more]
A0A161Y2Z5_DAUCA1.1e-4756.54Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_023643 PE=4 SV=1[more]
W9RHN4_9ROSA4.2e-4755.23Zinc finger protein 6 OS=Morus notabilis GN=L484_015446 PE=4 SV=1[more]
BLAST of CmoCh15G009600 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68360.16.7e-3645.90 C2H2 and C2HC zinc fingers superfamily protein[more]
AT1G67030.19.3e-2243.14 zinc finger protein 6[more]
AT1G10480.13.6e-1342.86 zinc finger protein 5[more]
AT5G06650.14.8e-1040.00 C2H2 and C2HC zinc fingers superfamily protein[more]
AT3G58070.11.2e-0851.67 C2H2 and C2HC zinc fingers superfamily protein[more]
BLAST of CmoCh15G009600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|821595291|ref|NP_001295848.1|1.2e-7975.81zinc finger protein 6-like [Cucumis sativus][more]
gi|659072978|ref|XP_008467196.1|1.6e-7975.46PREDICTED: zinc finger protein 6-like [Cucumis melo][more]
gi|661896068|emb|CDP00646.1|4.8e-5259.39unnamed protein product [Coffea canephora][more]
gi|731370284|ref|XP_002283623.2|1.2e-5056.11PREDICTED: zinc finger protein 6 [Vitis vinifera][more]
gi|147769067|emb|CAN72502.1|1.2e-5056.11hypothetical protein VITISV_027276 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007087Zinc finger, C2H2
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G009600.1CmoCh15G009600.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007087Zinc finger, C2H2PFAMPF13912zf-C2H2_6coord: 56..80
score: 9.
IPR007087Zinc finger, C2H2PROSITEPS00028ZINC_FINGER_C2H2_1coord: 58..78
scor
IPR007087Zinc finger, C2H2PROFILEPS50157ZINC_FINGER_C2H2_2coord: 56..83
score: 11
IPR013087Zinc finger C2H2-type/integrase DNA-binding domainGENE3DG3DSA:3.30.160.60coord: 51..82
score: 2.
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 52..83
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh15G009600Cucsa.283410Cucumber (Gy14) v1cgycmoB0788
CmoCh15G009600Cucsa.280790Cucumber (Gy14) v1cgycmoB0771
CmoCh15G009600CmaCh18G010060Cucurbita maxima (Rimu)cmacmoB402
CmoCh15G009600CmaCh04G020700Cucurbita maxima (Rimu)cmacmoB685
CmoCh15G009600CmaCh04G014990Cucurbita maxima (Rimu)cmacmoB696
CmoCh15G009600CmaCh15G009210Cucurbita maxima (Rimu)cmacmoB287
CmoCh15G009600Cla020411Watermelon (97103) v1cmowmB259
CmoCh15G009600Csa5G609820Cucumber (Chinese Long) v2cmocuB282
CmoCh15G009600Csa5G577350Cucumber (Chinese Long) v2cmocuB289
CmoCh15G009600MELO3C005347Melon (DHL92) v3.5.1cmomeB245
CmoCh15G009600MELO3C012263Melon (DHL92) v3.5.1cmomeB254
CmoCh15G009600ClCG05G022560Watermelon (Charleston Gray)cmowcgB255
CmoCh15G009600ClCG01G005820Watermelon (Charleston Gray)cmowcgB245
CmoCh15G009600CSPI05G25420Wild cucumber (PI 183967)cmocpiB292
CmoCh15G009600CSPI05G20070Wild cucumber (PI 183967)cmocpiB298
CmoCh15G009600Lsi09G006160Bottle gourd (USVL1VR-Ls)cmolsiB250
CmoCh15G009600Lsi04G002400Bottle gourd (USVL1VR-Ls)cmolsiB272
CmoCh15G009600Cp4.1LG09g03130Cucurbita pepo (Zucchini)cmocpeB263
CmoCh15G009600Cp4.1LG13g07020Cucurbita pepo (Zucchini)cmocpeB268
CmoCh15G009600Cp4.1LG01g18070Cucurbita pepo (Zucchini)cmocpeB283
CmoCh15G009600Cp4.1LG01g13720Cucurbita pepo (Zucchini)cmocpeB285
CmoCh15G009600MELO3C005347.2Melon (DHL92) v3.6.1cmomedB279
CmoCh15G009600MELO3C012263.2Melon (DHL92) v3.6.1cmomedB288
CmoCh15G009600CsaV3_5G034460Cucumber (Chinese Long) v3cmocucB0341
CmoCh15G009600CsaV3_5G028870Cucumber (Chinese Long) v3cmocucB0350
CmoCh15G009600Cla97C05G104390Watermelon (97103) v2cmowmbB290
CmoCh15G009600Cla97C01G006090Watermelon (97103) v2cmowmbB268
CmoCh15G009600Bhi07G001083Wax gourdcmowgoB0401
CmoCh15G009600Bhi12G000725Wax gourdcmowgoB0359
CmoCh15G009600CsGy5G019590Cucumber (Gy14) v2cgybcmoB586
CmoCh15G009600Carg01848Silver-seed gourdcarcmoB1130
CmoCh15G009600Carg24931Silver-seed gourdcarcmoB1071
CmoCh15G009600Carg19054Silver-seed gourdcarcmoB1410
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh15G009600CmoCh18G010170Cucurbita moschata (Rifu)cmocmoB244
CmoCh15G009600CmoCh04G021650Cucurbita moschata (Rifu)cmocmoB254
CmoCh15G009600CmoCh04G015700Cucurbita moschata (Rifu)cmocmoB265
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh15G009600Cucurbita pepo (Zucchini)cmocpeB273
CmoCh15G009600Cucumber (Gy14) v2cgybcmoB580