CmoCh15G009200 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G009200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2
Location	Cmo_Chr15 : 4666332 .. 4667490 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGGAAGCATGGACAAGTAATAACCCTTCTATCTCTCTTTCTTTCTCTCATTTGTATTTGCATGAGTTTTTTTTGGTAAGGATTTTGGTGTTTCCATTTGTTTTTGATTGTTAGGTCATGTGGCCAAGATTGGTTGCTAATAAGATTTTGAAGAAGAGATTGGGTAGCAATAGCTTTGTGGCTGATATTCCATCCAACAACACTTCTCAATCTTTGCTTCAAATTCCACTCTTTGCTCAATCTTCTTCACTCCCTAATGCCTTCTATAAGCCTCCCATCCAAAATTACAAGTAATATTTGCTTCATATATGCCTCATTTCTTCCCCATTTCATCTTCAAACTTATGTCTCTTTCCTTTGTTTTTGTTAGGGTTTTTGTTAGTACATGGAATGTTGGAGGAGTTGCACCAAATCAAGATTTGGACATGGAGGATTGGGTGGACATTTCTTGTGACATCTATGTTTTTGGGTAACTTCACTTTTTACTTTCGGATTGTTTTTGTTTATCTGTGATATCTCATGTCGATTGGGGAGGAGAACGAAACATTTTTTATACGGGTGTGAAAACCTCTGCCTATTGTCGATTGGGGAGGAGAACGAAACATTTTTTATAAAGGTGTGAAAACCTCTCCCTCTCAGATGCGTTCTAAACACCTTGAGTAGAAGCCTGAAAGGGAAAGCCCAAAGAAGACAATATCTGTTAACACTGGGTTTGGGCTGTTACATTATCTCTTGATTTTGAATTTGGGTATGTGAGATCTCACACCGGTTGGGGAGGAGAACGAAGCATTCTTTCTAAATGTGTGGAAACCTCTCCGTAGCAGACACATTTTAAAAATCTTGGGGGAAGCCCAAGAGGGAAAGCCCAGACAGGACAATATCTGCTAGTACTGGGTTTGGACGGTTACGTTATCTCTTTTGTGATTTTGAATTTGGGTATGTGAGATCCCGAACAAAACTTCAAAATTCAAAAAAGACGATATCTATTAGTAGTGGGTTTGGTTTGGACGGTTAGGGTATAGTTGAATTAGATTATATGCCAAAGTTTACCGGAATAGAACAGTAAATGTTGATTAGGGTTTGTTAATTACATGCATGCAGATTCCAAGAAATAGTGCCATTGAAAGCCTCGAATGTGTTTGGATCAGAGAATAG

mRNA sequence

ATGGCTGGGAAGCATGGACAAGTCATGTGGCCAAGATTGGTTGCTAATAAGATTTTGAAGAAGAGATTGGGTAGCAATAGCTTTGTGGCTGATATTCCATCCAACAACACTTCTCAATCTTTGCTTCAAATTCCACTCTTTGCTCAATCTTCTTCACTCCCTAATGCCTTCTATAAGCCTCCCATCCAAAATTACAAGGTTTTTGTTAGTACATGGAATGTTGGAGGAGTTGCACCAAATCAAGATTTGGACATGGAGGATTGGATTCCAAGAAATAGTGCCATTGAAAGCCTCGAATGTGTTTGGATCAGAGAATAG

Coding sequence (CDS)

ATGGCTGGGAAGCATGGACAAGTCATGTGGCCAAGATTGGTTGCTAATAAGATTTTGAAGAAGAGATTGGGTAGCAATAGCTTTGTGGCTGATATTCCATCCAACAACACTTCTCAATCTTTGCTTCAAATTCCACTCTTTGCTCAATCTTCTTCACTCCCTAATGCCTTCTATAAGCCTCCCATCCAAAATTACAAGGTTTTTGTTAGTACATGGAATGTTGGAGGAGTTGCACCAAATCAAGATTTGGACATGGAGGATTGGATTCCAAGAAATAGTGCCATTGAAAGCCTCGAATGTGTTTGGATCAGAGAATAG

Homology

[Close]

BLAST of CmoCh15G009200 vs. Swiss-Prot
Match: IP5P9_ARATH (Type IV inositol polyphosphate 5-phosphatase 9 OS=Arabidopsis thaliana GN=IP5P9 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-18
Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 9  MWPRLVANKILKKRLGSNSFVADIPSNNTSQSLLQIPLFA--QSSSLPNAFYKPPIQNYK 68
          MWPRLVANKIL+K LGSN+FVAD P N T Q L++    A  +S S+ +  +K  + NYK
Sbjct: 1  MWPRLVANKILRKSLGSNNFVADFPPN-TDQKLIEASGLADERSKSILHNQHKTTLLNYK 60

Query: 69 VFVSTWNVGGVAPNQDLDMED 88
          VFVSTWNVGG+ P+  LDMED
Sbjct: 61 VFVSTWNVGGIVPDDGLDMED 80

[Close]

BLAST of CmoCh15G009200 vs. TrEMBL
Match: A0A0A0KJ17_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G091890 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-37
Identity = 78/90 (86.67%), Postives = 85/90 (94.44%), Query Frame = 1


Query: 1  MAGKHGQVMWPRLVANKILKKRLGSNSFVADIPSNNT-SQSLLQIPLFAQSSSLPNAFYK 60
          MAGKHG+VMWPRLVANKILKKRLGSN+FVADIPSNN  S++LL+IPLFAQSSS+PNAFYK
Sbjct: 1  MAGKHGEVMWPRLVANKILKKRLGSNNFVADIPSNNNNSEALLEIPLFAQSSSVPNAFYK 60

Query: 61 PPIQNYKVFVSTWNVGGVAPNQDLDMEDWI 90
          PP QNYKVFVSTWNVGGVAPN DLDMED +
Sbjct: 61 PPTQNYKVFVSTWNVGGVAPNDDLDMEDLV 90

[Close]

BLAST of CmoCh15G009200 vs. TrEMBL
Match: B9S7E6_RICCO (Type I inositol polyphosphate 5-phosphatase, putative OS=Ricinus communis GN=RCOM_0778110 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.5e-22
Identity = 57/96 (59.38%), Postives = 70/96 (72.92%), Query Frame = 1


Query: 7   QVMWPRLVANKILKKRLGSNSFVADIPSNNTSQ-SLLQIPLFAQSSSLPNAFY----KPP 66
           +VMWPRLVA+KIL+KRLGSN+FVAD P N T++ SLL IP F Q S   +  +    K  
Sbjct: 19  KVMWPRLVASKILRKRLGSNNFVADFPHNGTTEGSLLDIPNFGQPSLSADTIFDHRHKVD 78

Query: 67  IQNYKVFVSTWNVGGVAPNQDLDMEDWI--PRNSAI 96
             NYK+FVSTWNVGG+AP++DLDMEDW+  P N  I
Sbjct: 79  THNYKIFVSTWNVGGIAPSEDLDMEDWLDTPNNCDI 114

[Close]

BLAST of CmoCh15G009200 vs. TrEMBL
Match: A0A067F0F2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046944mg PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.9e-20
Identity = 51/81 (62.96%), Postives = 62/81 (76.54%), Query Frame = 1


Query: 9  MWPRLVANKILKKRLGSNSFVADIPSNNTSQSLLQIPLFAQSSSLPNAFYKPPIQNYKVF 68
          MWPRLVANK L+KRLGSNSFVAD PSN+  ++L++IP   +  SL +       QNYKVF
Sbjct: 1  MWPRLVANKFLRKRLGSNSFVADFPSND-EETLIRIPSLDKQQSLSHD--NKETQNYKVF 60

Query: 69 VSTWNVGGVAPNQDLDMEDWI 90
           STWNVGGVAP +D+DMEDW+
Sbjct: 61 ASTWNVGGVAPTEDIDMEDWL 78

[Close]

BLAST of CmoCh15G009200 vs. TrEMBL
Match: V4UAZ4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015366mg PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.9e-20
Identity = 51/81 (62.96%), Postives = 62/81 (76.54%), Query Frame = 1


Query: 9  MWPRLVANKILKKRLGSNSFVADIPSNNTSQSLLQIPLFAQSSSLPNAFYKPPIQNYKVF 68
          MWPRLVANK L+KRLGSNSFVAD PSN+  ++L++IP   +  SL +       QNYKVF
Sbjct: 1  MWPRLVANKFLRKRLGSNSFVADFPSND-EETLIRIPSLDKQQSLSHD--NKETQNYKVF 60

Query: 69 VSTWNVGGVAPNQDLDMEDWI 90
           STWNVGGVAP +D+DMEDW+
Sbjct: 61 ASTWNVGGVAPTEDIDMEDWL 78

[Close]

BLAST of CmoCh15G009200 vs. TrEMBL
Match: A0A0D2PTK8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G153900 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-17
Identity = 48/83 (57.83%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 7  QVMWPRLVANKILKKRLGSNSFVADIPSNNTSQSLLQIPLFAQSSSLPNAFYK--PPIQN 66
          +VMWPRLVANKIL+KRLGSN+FVAD P N       +IP   + S  PN+ +       N
Sbjct: 6  EVMWPRLVANKILRKRLGSNNFVADFPCNK------EIPSLDRPSLSPNSIFSHHKDTHN 65

Query: 67 YKVFVSTWNVGGVAPNQDLDMED 88
          Y++FVSTWNVGGVAP +DLD+ED
Sbjct: 66 YRIFVSTWNVGGVAPPEDLDIED 82

[Close]

BLAST of CmoCh15G009200 vs. TAIR10
Match: AT2G01900.1 (AT2G01900.1 DNAse I-like superfamily protein)

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-19
Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 9  MWPRLVANKILKKRLGSNSFVADIPSNNTSQSLLQIPLFA--QSSSLPNAFYKPPIQNYK 68
          MWPRLVANKIL+K LGSN+FVAD P N T Q L++    A  +S S+ +  +K  + NYK
Sbjct: 1  MWPRLVANKILRKSLGSNNFVADFPPN-TDQKLIEASGLADERSKSILHNQHKTTLLNYK 60

Query: 69 VFVSTWNVGGVAPNQDLDMED 88
          VFVSTWNVGG+ P+  LDMED
Sbjct: 61 VFVSTWNVGGIVPDDGLDMED 80

[Close]

BLAST of CmoCh15G009200 vs. NCBI nr
Match: gi|778698376|ref|XP_004150156.2| (PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 1.7e-37
Identity = 78/90 (86.67%), Postives = 85/90 (94.44%), Query Frame = 1


Query: 1  MAGKHGQVMWPRLVANKILKKRLGSNSFVADIPSNNT-SQSLLQIPLFAQSSSLPNAFYK 60
          MAGKHG+VMWPRLVANKILKKRLGSN+FVADIPSNN  S++LL+IPLFAQSSS+PNAFYK
Sbjct: 1  MAGKHGEVMWPRLVANKILKKRLGSNNFVADIPSNNNNSEALLEIPLFAQSSSVPNAFYK 60

Query: 61 PPIQNYKVFVSTWNVGGVAPNQDLDMEDWI 90
          PP QNYKVFVSTWNVGGVAPN DLDMED +
Sbjct: 61 PPTQNYKVFVSTWNVGGVAPNDDLDMEDLV 90

[Close]

BLAST of CmoCh15G009200 vs. NCBI nr
Match: gi|700194553|gb|KGN49730.1| (hypothetical protein Csa_5G091890 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 1.7e-37
Identity = 78/90 (86.67%), Postives = 85/90 (94.44%), Query Frame = 1


Query: 1  MAGKHGQVMWPRLVANKILKKRLGSNSFVADIPSNNT-SQSLLQIPLFAQSSSLPNAFYK 60
          MAGKHG+VMWPRLVANKILKKRLGSN+FVADIPSNN  S++LL+IPLFAQSSS+PNAFYK
Sbjct: 1  MAGKHGEVMWPRLVANKILKKRLGSNNFVADIPSNNNNSEALLEIPLFAQSSSVPNAFYK 60

Query: 61 PPIQNYKVFVSTWNVGGVAPNQDLDMEDWI 90
          PP QNYKVFVSTWNVGGVAPN DLDMED +
Sbjct: 61 PPTQNYKVFVSTWNVGGVAPNDDLDMEDLV 90

[Close]

BLAST of CmoCh15G009200 vs. NCBI nr
Match: gi|659072731|ref|XP_008466924.1| (PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 isoform X2 [Cucumis melo])

HSP 1 Score: 160.6 bits (405), Expect = 1.5e-36
Identity = 77/88 (87.50%), Postives = 83/88 (94.32%), Query Frame = 1


Query: 1  MAGKHGQVMWPRLVANKILKKRLGSNSFVADIPSNNT-SQSLLQIPLFAQSSSLPNAFYK 60
          MAGKHG+VMWPRLVANKILKKRLGSN+FVADIPSNN  S++LL+IPLFAQSSS+PNAFYK
Sbjct: 1  MAGKHGEVMWPRLVANKILKKRLGSNNFVADIPSNNNNSEALLEIPLFAQSSSVPNAFYK 60

Query: 61 PPIQNYKVFVSTWNVGGVAPNQDLDMED 88
          PP QNYKVFVSTWNVGGVAPN DLDM D
Sbjct: 61 PPTQNYKVFVSTWNVGGVAPNDDLDMGD 88

[Close]

BLAST of CmoCh15G009200 vs. NCBI nr
Match: gi|659072729|ref|XP_008466917.1| (PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 isoform X1 [Cucumis melo])

HSP 1 Score: 160.6 bits (405), Expect = 1.5e-36
Identity = 77/88 (87.50%), Postives = 83/88 (94.32%), Query Frame = 1


Query: 1  MAGKHGQVMWPRLVANKILKKRLGSNSFVADIPSNNT-SQSLLQIPLFAQSSSLPNAFYK 60
          MAGKHG+VMWPRLVANKILKKRLGSN+FVADIPSNN  S++LL+IPLFAQSSS+PNAFYK
Sbjct: 1  MAGKHGEVMWPRLVANKILKKRLGSNNFVADIPSNNNNSEALLEIPLFAQSSSVPNAFYK 60

Query: 61 PPIQNYKVFVSTWNVGGVAPNQDLDMED 88
          PP QNYKVFVSTWNVGGVAPN DLDM D
Sbjct: 61 PPTQNYKVFVSTWNVGGVAPNDDLDMGD 88

[Close]

BLAST of CmoCh15G009200 vs. NCBI nr
Match: gi|659072733|ref|XP_008466927.1| (PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 isoform X3 [Cucumis melo])

HSP 1 Score: 160.6 bits (405), Expect = 1.5e-36
Identity = 77/88 (87.50%), Postives = 83/88 (94.32%), Query Frame = 1


Query: 1  MAGKHGQVMWPRLVANKILKKRLGSNSFVADIPSNNT-SQSLLQIPLFAQSSSLPNAFYK 60
          MAGKHG+VMWPRLVANKILKKRLGSN+FVADIPSNN  S++LL+IPLFAQSSS+PNAFYK
Sbjct: 1  MAGKHGEVMWPRLVANKILKKRLGSNNFVADIPSNNNNSEALLEIPLFAQSSSVPNAFYK 60

Query: 61 PPIQNYKVFVSTWNVGGVAPNQDLDMED 88
          PP QNYKVFVSTWNVGGVAPN DLDM D
Sbjct: 61 PPTQNYKVFVSTWNVGGVAPNDDLDMGD 88

The following BLAST results are available for this feature:

BLAST of CmoCh15G009200 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IP5P9_ARATH	1.8e-18	59.26	Type IV inositol polyphosphate 5-phosphatase 9 OS=Arabidopsis thaliana GN=IP5P9 ...	[more]

BLAST of CmoCh15G009200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJ17_CUCSA	1.2e-37	86.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G091890 PE=4 SV=1	[more]
B9S7E6_RICCO	5.5e-22	59.38	Type I inositol polyphosphate 5-phosphatase, putative OS=Ricinus communis GN=RCO...	[more]
A0A067F0F2_CITSI	3.9e-20	62.96	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046944mg PE=4 SV=1	[more]
V4UAZ4_9ROSI	3.9e-20	62.96	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015366mg PE=4 SV=1	[more]
A0A0D2PTK8_GOSRA	2.4e-17	57.83	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G153900 PE=4 SV=1	[more]

BLAST of CmoCh15G009200 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01900.1	1.0e-19	59.26	DNAse I-like superfamily protein	[more]

BLAST of CmoCh15G009200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778698376\|ref\|XP_004150156.2\|	1.7e-37	86.67	PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Cucumis sativ...	[more]
gi\|700194553\|gb\|KGN49730.1\|	1.7e-37	86.67	hypothetical protein Csa_5G091890 [Cucumis sativus]	[more]
gi\|659072731\|ref\|XP_008466924.1\|	1.5e-36	87.50	PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 isoform X2 [Cu...	[more]
gi\|659072729\|ref\|XP_008466917.1\|	1.5e-36	87.50	PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 isoform X1 [Cu...	[more]
gi\|659072733\|ref\|XP_008466927.1\|	1.5e-36	87.50	PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 isoform X3 [Cu...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005135	Endo/exonuclease/phosphatase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046856	phosphatidylinositol dephosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046030	inositol trisphosphate phosphatase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G009200.1	CmoCh15G009200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005135	Endonuclease/exonuclease/phosphatase	GENE3D	G3DSA:3.60.10.10		coord: 61..91 score: 5.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G009200	Csa5G091890	Cucumber (Chinese Long) v2	cmocuB290
CmoCh15G009200	CSPI05G01880	Wild cucumber (PI 183967)	cmocpiB299
CmoCh15G009200	Cp4.1LG01g18620	Cucurbita pepo (Zucchini)	cmocpeB280

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G009200	Melon (DHL92) v3.6.1	cmomedB272
CmoCh15G009200	Silver-seed gourd	carcmoB1118
CmoCh15G009200	Silver-seed gourd	carcmoB1188
CmoCh15G009200	Watermelon (97103) v2	cmowmbB271
CmoCh15G009200	Wax gourd	cmowgoB0370
CmoCh15G009200	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh15G009200	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G009200	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G009200	Melon (DHL92) v3.5.1	cmomeB240
CmoCh15G009200	Watermelon (Charleston Gray)	cmowcgB248
CmoCh15G009200	Watermelon (97103) v1	cmowmB268
CmoCh15G009200	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G009200	Bottle gourd (USVL1VR-Ls)	cmolsiB256