CmoCh15G008900 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G008900
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	NEFA-interacting nuclear protein NIP30,N-terminal
Location	Cmo_Chr15 : 4500467 .. 4505252 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAATGGTTAGAATCGCGTGAAAATTTCCAACAGATGAACTGAGTTCGGTTCGGTTCTTCATCAGAAGCATTGCAAGGGAGGAATTCGAGAGAGAGTGACAAAAACTTGCAGGGAAGTGATTTTGTAAAACTATAATCCCTTCTAGGCCGTTTATTTTCGGTGAAAATTTCCTGTGTTCGAACTCGACGGTAAGCGAAATGGAGGACGAATCTGCGCGAGCAATCCGGCTTATGAGTTTCGTCTCTGAGGAACAGGTTCTTCTTCTTCTTCCCTTCCTTTCCTTCGATTAATTCACATAAGATTTGGGATTTTTTCATCAAATTAATGCGAACTTATTCATGTTTTGCAGCTGGACGAAGCCAAGAAAACAAGGGGCGAACGAGTTGAGGATGGCACTGCTCAAAGAGACAGACCCCTCTACGAGGTTCTTCAACGTTTATTCACTTTTACACCCCAATTTTAATTATTGTAGTAGAATGGAAAGGAAATATTTGTTTTCTTAGATGAGGCAATGAACATTTAGGTTTTTGGAATAACCTCCTTACGATCAGTGTAAACTCAGGCTATGAGTTGTACTACTGCAGCTAGCAAGTAGTGATAGATCTGGTAGAAAAAGTAATCACAAATCATAACCACAACATGTCATAGCCTGTCATTCCAAACATTTGTGAACCATTGGCTTAAGAGACCCTTGTCAATTACAGCTGCGATTCCAAATGAAACTTGGGTTTTTGGGTTTAGAGGCTTGGAGTTTCCCTCTTGGCTCTGACAATGGGATTGTTTTTTCATTTCATTGTTACTTACCCAAACCATTGGAGTAATTAAGAGAAGTAACATCAAGTTTGAGATAGAATTATGGATCACTGATGGTTTAGTTGTTTGACTAAACGAAGAGAAGTCCAGTTACAAGATTGGATGGGGAGTCTTTCTTAGTTTACAGAGATTGACATTGAGTCTTGTGTCTTCATTCTTTGTGAATGCTATATTTTACTAGTTAGTGATCGCTTTCTCCTCTATGATTTAAACGTTTAAGTGAATTTAAGATGTTCGACAACAATTTTTCTTGACTTATTTAAAACTATATTTCTAATAGACTAAATTATATTTATAAAAAAAAAATTGAACTCTATACTTTGTACATTGTTTCAATTACATCCTTGAACTTTAAAACATTGCATTGATGTTCTTAAAATTTCAACAAAAGTTATAAAAGAAGTACTCTTACAACGAATAGAAACCATTTGTATCTTCTTTCAATAATATTCTTGAACTGTCAAAAGTTGCATTAATGTCCTTAATGTTTCAAAAAATGTCTTACAGTATATGGACAGAAATCATTTATGCACACCCCGTCATCTCCCTTTAATCTATGACATAATTTTGAGGACAACCAGTGGAAGGGAAAATAAGGCATAATTAGCTTGAACTCACACATAAAATTATACTGAGGGGATTTCAAAGCTAAACGGAGAACAACACGTTTGGATAAACATTTTGAATATTAATCCAAAAACTATCAATTAGTTCATGTAATCTGGTCAAGCCATGCAAAAAACCTAAGTCGATTGAATATGACCGGTTTTTCTTATACCAACCAAAATTTGCAAACCAAACTAGATTCAACTCGAGTCAACATCGGTTTCAGTATGTTTAAAAGAGGGCATTGAAGCACAGATGGTAAATGTTAGGTTGTGGTTGTAGGTAAATGATTTCTGTGAGGTCATAGATTAAGGTAGAGTAGAGAAAGAAAATGAAACAGGGAGGTGATGGGAGTAGGTAAATGATTTTTGTCCATACACGAAATATAAGGGTATTTTTTTTTTATAGGCCAGTGTATTGTTACAACTTTTAAAAGTTCAAAGGTATTATTGAAGTAAGGTAATAATTATTTTCTTTCATATACTTACAGTAATGGTACTCTTGAATTTTTTTTTAAAGCTCAAGGGTATGATTGAAATAACGTGGGTATGTTCTATAATTTAGTCTTATTAATATTAATACTTCAGTTGTCTTTGATGGCTTAAATCTTTGTAAGGCCTGTTTTTGTAATCTTTCATTCTTCTCAATGTAAGTACTAAAGTTTACATGCATGTACTCTGTTTATGAGCAGTTGAGTGCATAGATTTAAACATTTTTGTTGTTTACTACATTTCTCTTTTCTGTTCACAGATCTTAAAGGAAAATAAAGACAAGCGTGATGCTGAATTTAATGAACGGTTCAAGCACAGTGAGTGCTGAAGTGTAATATCAATTTTAATAACTCATGTACTAATATTTACTATCGATCCAATCAAGGATGCCAGATAGCAGAGACAATCGAAGATATAGGATCACATCCATGCCATCATGCAAGGATTAAAATTCATGCTTATTCAGCTCTTTTACTGCAGGACCACCAAAGGCTCTGGACGAGGATGAGACAGAATTTCTGGATAAATATGAAACAGTGAGTCTATTTGTTTTACACTCGTTAGCCATTAGCACCGCTTACAATTTGTTAATTAGTTCAATATCAAGTAACCAAATCATATTTAGTAATTGTAAATTTGTTCTTTCATCTATTTTATTGTCAATTGAAATGCAGTCAAAGAGAGAATATGAAAGGCAAATGGCTGATGCAGATGAACAAGAGCTTCGCAGTTTTCAAGTAATTATCCTTATGTCCAAATCAAGCAAACTTTCTGTGTTACTTGTTTTTCCTTTTCAATTTATTGATAAATTGTATGCTAGGGTCACAAAACTATGATATCACTTTGAAGAATTGTATGCTAATCAACTGTAATTTCGTATGGTAGTAAGTATGGGACTATTGAGCATGCTATGCTACATTAGAGAAAGGCTTCCAATTCTGAGCATAAGATGCTACATTGTTTCTTTAATAGCAATGGTAGTCTGTAGCCCTTGATTAATGCACTGTCCGAAATAGCCTGAAAAATGTACGTCTATGTGTGCTTTGTTCACAGGTGCAGGTGAGGCACCCTAAGTGCACGTCTCTACTTTAGCGATACAAATTTTCAAAAATAAAGTACGGTTACAATTAAAAAAGAAGAGTAAAATAGAGCTAGAAAAACATCAGCTTCCAAATAAAGTTGGTTTATCCCTTTCAGTTCGCCTTTTCATCTGAAACACTCTCTTTCCACACCAATGTATATGGAGAAACATGAAAATGAGACTGAAGCCAAAGATTATACGGCCAGAAGTCTAATGACAAGGAATGTGGGACGTGGACCGTGATGAATTTTAATTTTTAAGTCTTTGTTTGACTTTTCACCCTTTGTTGTTGAGAGGTCCATACTACTTGAATCTTCTTTGTTTGTAACAGTTAATTCTCTATCTTTTATACTTCGTGTGCTGGTTTTTCTATTTTGTTTACTTACTGAAGCCGTCACTTTCTTTTGTGCATTGTGCTTAAGCTTTAGATGATTAATTCACATCAGGTTTTAAAGAATGTCTTATTATCGTAATAATTTGCTAAAAAGTTGTATTATAGAGACCATTATTGTGGCATCTGGGTTTATTAGTTATCTCTAGCAGTGGTTTATCTTTAAGATTAACAAGTACTGAAAAAAATGATGGCAGTTCTTCAGTGTGTTTTGGGACTCGAAGAAGATTCGTATTAAGTGAATCAATTCTTGAATTCAAGTGCCCGTGTTTCCCTTGTTATAGATTAGATACAGTAGCAGTAATAAACATTGCACTTAGCCTCCGAATGTAGAGTATGGAGATTTCCAGTGACCCATTATACTACTTTGATTATTGTTCATGATAGGCCTGTCTTTTCCCAACAATTCTTTAATAACTGATGAAGGCTGCAGAAAAATATGCCACAAGTTTTTAGTCAACTACCATGCTTGTGATTCTGTTTTTAGTTGTCCCTTGCTTTCTGCTTAGTGATATTACATCTTGTCGACAATGTACATGAATACTAGAGTGGCCACTCTAAATTTCTTCTCAAGTACTGTTCTTGATGATCTTTCAGGCAGCAGTAGCAGCACAATCTATTTTGTTGAGTGAAGTGAGGGAAATAACCCCCCCTGCTCCAGCAGCTCAGGTTGGTTTAATTCAAACTCTATGTGCATCCAACAACTTTTTGTTTGAGTAGCCACATCATGAACGGTCAAACAATAATTCTACTATCTGATAGCAAGAACCATATTCGTAAACACTAAATATCAGCTAAACTCGTGCATATTACAAATTCTTAGATTGTTAGATGTTTTAATGAAATGTTAAACGTTGGTGGCTAGCTTGTACACGTGACTGCTATCTACTGTGTTTATTATACATACAAGGGTGTGAGTACATTCATCAGACCGGTCTGTTCTTTCCTGTCGAGATGCGATCGTGCTGGTGTAATGAAGGTTCATTGTATCAATTAGCACCTAATATCACCCTCAATTGGGTGCAGGAAAAGGCACCAGTTAGGAAAGAAACTCCGGTGACTCGACCCCCGAGTATGATTATTAGAGTAAAGCCACAGGCAAAGAAAGCGAGGATCGAACCGAGAAGCCCAGAAAAAGCTGGTAGCAGAGCTGAAATCCTTAATGCCAAAGCAGAGGAGAGTTCAGAATCAGTAAGAACACATGATACCAGTAGTGATAGGCCGCTTGAAGCTGCTACAACAATAGGACTAGTTTCATATAGTGATGAAAGTGAAGATGAAGATTAGCAAATTGATTTGGCTATTAGAATTTCCCCCAACAATCACCAATATTGTATTAAATTTTTTGGTTTGAGTTTCTGAAATGATGAATCCTTTTTTTATAAAAAAAAATATATTCGAG

mRNA sequence

TTAAATGGTTAGAATCGCGTGAAAATTTCCAACAGATGAACTGAGTTCGGTTCGGTTCTTCATCAGAAGCATTGCAAGGGAGGAATTCGAGAGAGAGTGACAAAAACTTGCAGGGAAGTGATTTTGTAAAACTATAATCCCTTCTAGGCCGTTTATTTTCGGTGAAAATTTCCTGTGTTCGAACTCGACGGTAAGCGAAATGGAGGACGAATCTGCGCGAGCAATCCGGCTTATGAGTTTCGTCTCTGAGGAACAGCTGGACGAAGCCAAGAAAACAAGGGGCGAACGAGTTGAGGATGGCACTGCTCAAAGAGACAGACCCCTCTACGAGATCTTAAAGGAAAATAAAGACAAGCGTGATGCTGAATTTAATGAACGGTTCAAGCACAGACCACCAAAGGCTCTGGACGAGGATGAGACAGAATTTCTGGATAAATATGAAACATCAAAGAGAGAATATGAAAGGCAAATGGCTGATGCAGATGAACAAGAGCTTCGCAGTTTTCAAGCAGCAGTAGCAGCACAATCTATTTTGTTGAGTGAAGTGAGGGAAATAACCCCCCCTGCTCCAGCAGCTCAGGAAAAGGCACCAGTTAGGAAAGAAACTCCGGTGACTCGACCCCCGAGTATGATTATTAGAGTAAAGCCACAGGCAAAGAAAGCGAGGATCGAACCGAGAAGCCCAGAAAAAGCTGGTAGCAGAGCTGAAATCCTTAATGCCAAAGCAGAGGAGAGTTCAGAATCAGTAAGAACACATGATACCAGTAGTGATAGGCCGCTTGAAGCTGCTACAACAATAGGACTAGTTTCATATAGTGATGAAAGTGAAGATGAAGATTAGCAAATTGATTTGGCTATTAGAATTTCCCCCAACAATCACCAATATTGTATTAAATTTTTTGGTTTGAGTTTCTGAAATGATGAATCCTTTTTTTATAAAAAAAAATATATTCGAG

Coding sequence (CDS)

ATGGAGGACGAATCTGCGCGAGCAATCCGGCTTATGAGTTTCGTCTCTGAGGAACAGCTGGACGAAGCCAAGAAAACAAGGGGCGAACGAGTTGAGGATGGCACTGCTCAAAGAGACAGACCCCTCTACGAGATCTTAAAGGAAAATAAAGACAAGCGTGATGCTGAATTTAATGAACGGTTCAAGCACAGACCACCAAAGGCTCTGGACGAGGATGAGACAGAATTTCTGGATAAATATGAAACATCAAAGAGAGAATATGAAAGGCAAATGGCTGATGCAGATGAACAAGAGCTTCGCAGTTTTCAAGCAGCAGTAGCAGCACAATCTATTTTGTTGAGTGAAGTGAGGGAAATAACCCCCCCTGCTCCAGCAGCTCAGGAAAAGGCACCAGTTAGGAAAGAAACTCCGGTGACTCGACCCCCGAGTATGATTATTAGAGTAAAGCCACAGGCAAAGAAAGCGAGGATCGAACCGAGAAGCCCAGAAAAAGCTGGTAGCAGAGCTGAAATCCTTAATGCCAAAGCAGAGGAGAGTTCAGAATCAGTAAGAACACATGATACCAGTAGTGATAGGCCGCTTGAAGCTGCTACAACAATAGGACTAGTTTCATATAGTGATGAAAGTGAAGATGAAGATTAG

Homology

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BLAST of CmoCh15G008900 vs. Swiss-Prot
Match: F192A_MOUSE (Protein FAM192A OS=Mus musculus GN=Fam192a PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.4e-06
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 1


Query: 2   EDESARAIRLMSFVSEEQLDEAKKTRGERVEDGTAQRD-----------RPLYEILKENK 61
           ED+S   I+   FVSE +LDE +K R E  E      D           R LYE L+E K
Sbjct: 4   EDDSNLVIK-KRFVSEAELDERRKRRQEEWEKVRKPEDPKECPEEAYDPRSLYERLQEQK 63

Query: 62  DKRDAEFNERFKHR-PPKALDEDETEFLDKYETSKREYERQMADADEQELRSFQA 105
           D++  E+ E+FK +   + LDEDET FLD+    +   E+Q  + + +EL+ +++
Sbjct: 64  DRKQQEYEEQFKFKNMVRGLDEDETNFLDEVSRQQELIEKQRREEELEELKEYRS 117

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BLAST of CmoCh15G008900 vs. TrEMBL
Match: A0A0A0KPX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G125710 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.6e-89
Identity = 189/213 (88.73%), Postives = 200/213 (93.90%), Query Frame = 1


Query: 1   MEDESARAIRLMSFVSEEQLDEAKKTRGERVEDGTAQRDRPLYEILKENKDKRDAEFNER 60
           MEDES+RAIRLM+FVSEEQLDEAKKTRGERVEDGTAQRDRPL+EILKENKDKRDAEFNER
Sbjct: 1   MEDESSRAIRLMNFVSEEQLDEAKKTRGERVEDGTAQRDRPLFEILKENKDKRDAEFNER 60

Query: 61  FKHRPPKALDEDETEFLDKYETSKREYERQMADADEQELRSFQAAVAAQSILLSEVREIT 120
           FKHRPPKALDEDETEFLDK ETSKREYERQMA+A+EQELRSFQAAVAAQSILLSEVREIT
Sbjct: 61  FKHRPPKALDEDETEFLDKLETSKREYERQMANAEEQELRSFQAAVAAQSILLSEVREIT 120

Query: 121 PPAPAAQEKAPVRKETPVTRPPSMIIRVKPQAKKARIEPRSPEKAGSRAEILNAKAEESS 180
           PPAPAAQEKA VR+ETPV+RPPSMIIRVKPQAKKARIEPRSP+ AGS  EI  AKAEE+S
Sbjct: 121 PPAPAAQEKASVRRETPVSRPPSMIIRVKPQAKKARIEPRSPKIAGSTTEIHVAKAEETS 180

Query: 181 ESVRTHDTSSDRPLEAATTIGLVSYSDESEDED 214
            SV+T DT+SDRPLEA    GLVSYSDESEDED
Sbjct: 181 NSVKTLDTNSDRPLEAGAITGLVSYSDESEDED 213

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BLAST of CmoCh15G008900 vs. TrEMBL
Match: A0A067H781_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028180mg PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.6e-60
Identity = 137/213 (64.32%), Postives = 174/213 (81.69%), Query Frame = 1


Query: 1   MEDESARAIRLMSFVSEEQLDEAKKTRGERVEDGTAQRDRPLYEILKENKDKRDAEFNER 60
           M +ES+R IRLM+F+SEEQLDEAK+TRGERV+DGTAQRDRPL+EILKENKDK+DAEFNER
Sbjct: 1   MAEESSRPIRLMNFISEEQLDEAKRTRGERVDDGTAQRDRPLFEILKENKDKKDAEFNER 60

Query: 61  FKHRPPKALDEDETEFLDKYETSKREYERQMADADEQELRSFQAAVAAQSILLSEVREIT 120
           FKHRPPKALDEDETEFL+K+ETS+R+YERQ+AD + Q+LRSFQAAVAAQS ++ E++E T
Sbjct: 61  FKHRPPKALDEDETEFLEKWETSRRDYERQVADEEAQQLRSFQAAVAAQSTIVHELKE-T 120

Query: 121 PPAPAAQEKAPVRKETPVTRPPSMIIRVKPQAKKARIEPRSPEKAGSRAEILNAKAEESS 180
           PP PA QE+    ++ P TRP  MII+VKPQAKKARI+  S ++    A+  + + E+S 
Sbjct: 121 PPLPAVQEQKTAGRKNPPTRPLGMIIKVKPQAKKARIDEGSVKEPADIAKAPDVETEKSP 180

Query: 181 ESVRTHDTSSDRPLEAATTIGLVSYSDESEDED 214
           + VRT +  +D+  +   T GLVSYSDES+D+D
Sbjct: 181 DIVRTSNGDTDKSNDVTRT-GLVSYSDESDDDD 211

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BLAST of CmoCh15G008900 vs. TrEMBL
Match: V4U1D6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022224mg PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.0e-59
Identity = 135/213 (63.38%), Postives = 174/213 (81.69%), Query Frame = 1


Query: 1   MEDESARAIRLMSFVSEEQLDEAKKTRGERVEDGTAQRDRPLYEILKENKDKRDAEFNER 60
           M +ES+R IRLM+F+SEEQLDEAK+TRGERV+DGTAQRDRPL+EILKENKDK+DAEFNER
Sbjct: 1   MAEESSRPIRLMNFISEEQLDEAKRTRGERVDDGTAQRDRPLFEILKENKDKKDAEFNER 60

Query: 61  FKHRPPKALDEDETEFLDKYETSKREYERQMADADEQELRSFQAAVAAQSILLSEVREIT 120
           FKHRPPKALDEDETEFL+K+++S+R+YERQ+AD + Q+LRSFQAAVAAQS ++ E++E T
Sbjct: 61  FKHRPPKALDEDETEFLEKWDSSRRDYERQVADEEAQQLRSFQAAVAAQSTIVHELKE-T 120

Query: 121 PPAPAAQEKAPVRKETPVTRPPSMIIRVKPQAKKARIEPRSPEKAGSRAEILNAKAEESS 180
           PP PA QE+    ++ P TRP  MII+VKPQAKKARI+  S ++    A+  + + E+S 
Sbjct: 121 PPLPAVQEQKTAGRKNPPTRPLGMIIKVKPQAKKARIDEGSVKEPADIAKAPDVETEKSP 180

Query: 181 ESVRTHDTSSDRPLEAATTIGLVSYSDESEDED 214
           + VRT +  +D+  +   T GLVSYSDES+D+D
Sbjct: 181 DIVRTSNGDTDKSNDVTRT-GLVSYSDESDDDD 211

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BLAST of CmoCh15G008900 vs. TrEMBL
Match: A0A0B0P8Y1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_03615 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 7.4e-58
Identity = 135/213 (63.38%), Postives = 169/213 (79.34%), Query Frame = 1


Query: 1   MEDESARAIRLMSFVSEEQLDEAKKTRGERVEDGTAQRDRPLYEILKENKDKRDAEFNER 60
           ME+ES+ +I+LM+FVSE+QLDEAK+TRGER+EDGTAQRDRPLYEILKENKDK+DAEFNER
Sbjct: 1   MEEESSHSIKLMNFVSEQQLDEAKRTRGERIEDGTAQRDRPLYEILKENKDKKDAEFNER 60

Query: 61  FKHRPPKALDEDETEFLDKYETSKREYERQMADADEQELRSFQAAVAAQSILLSEVREIT 120
           FKHRPPKALDEDETEFLDK E S+REYERQ+AD + ++LRSFQAAVAAQS ++ E++E T
Sbjct: 61  FKHRPPKALDEDETEFLDKLEMSRREYERQVADEEAEQLRSFQAAVAAQSNIVLELKE-T 120

Query: 121 PPAPAAQEKAPVRKETPVTRPPSMIIRVKPQAKKARIEPRSPEKAGSRAEILNAKAEESS 180
           PP  A QE+  V K+ P TRP  M+I+VKPQAK+A+ EP     +G++A  +        
Sbjct: 121 PPVLANQEQKTVGKKNPATRPLGMLIKVKPQAKRAKTEPEEKLVSGTKAPDV-------- 180

Query: 181 ESVRTHDTSSDRPLEAATTIGLVSYSDESEDED 214
           ++V +  +  D+ L  A T GLVSYSDESED+D
Sbjct: 181 DNVESPKSDPDKSLNVAKT-GLVSYSDESEDDD 203

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BLAST of CmoCh15G008900 vs. TrEMBL
Match: A0A0D2RTF5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G046700 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 6.2e-57
Identity = 134/213 (62.91%), Postives = 168/213 (78.87%), Query Frame = 1


Query: 1   MEDESARAIRLMSFVSEEQLDEAKKTRGERVEDGTAQRDRPLYEILKENKDKRDAEFNER 60
           MEDES+ +I+L++FVSE+QLDEAK+TRGER+EDGTAQRDRPLYEILKENKDK+DAEFNER
Sbjct: 1   MEDESSHSIKLVNFVSEQQLDEAKRTRGERIEDGTAQRDRPLYEILKENKDKKDAEFNER 60

Query: 61  FKHRPPKALDEDETEFLDKYETSKREYERQMADADEQELRSFQAAVAAQSILLSEVREIT 120
           FKHRPPKALDEDETEFLDK   S+REYERQ+AD + ++LRSFQAAVAAQS ++ E++E T
Sbjct: 61  FKHRPPKALDEDETEFLDKLVMSRREYERQVADEEAEQLRSFQAAVAAQSNVVLELKE-T 120

Query: 121 PPAPAAQEKAPVRKETPVTRPPSMIIRVKPQAKKARIEPRSPEKAGSRAEILNAKAEESS 180
           PP  A QE+  V K+ P TRP  M+I+VKPQAK+A+ EP     +G++A  +        
Sbjct: 121 PPVLANQEQKTVGKKNPATRPLGMLIKVKPQAKRAKTEPEEKLVSGTKAPDV-------- 180

Query: 181 ESVRTHDTSSDRPLEAATTIGLVSYSDESEDED 214
           ++V +  +  D+ L  A T GLVSYSDESED+D
Sbjct: 181 DNVESPKSDPDKSLNVAKT-GLVSYSDESEDDD 203

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BLAST of CmoCh15G008900 vs. TAIR10
Match: AT3G62140.1 (AT3G62140.1 NEFA-interacting nuclear protein NIP30, N-terminal (InterPro:IPR019331))

HSP 1 Score: 211.1 bits (536), Expect = 6.8e-55
Identity = 126/215 (58.60%), Postives = 159/215 (73.95%), Query Frame = 1


Query: 1   MEDESARAIRLMSFVSEEQLDEAKKTRGERVEDGTAQRDRPLYEILKENKDKRDAEFNER 60
           M DE+ + IRL++FVSEEQLDE+KK RGERVEDGT QRDR LYEILKENKDK+DAEFNER
Sbjct: 1   MVDETEKPIRLLNFVSEEQLDESKKERGERVEDGTFQRDRALYEILKENKDKKDAEFNER 60

Query: 61  FKHRPPKALDEDETEFLDKYETSKREYERQMADADEQELRSFQAAVAAQSILLSEVRE-- 120
           FKHRPPKALDEDETEFLDK E SKREYERQ+A+ ++++LR+FQAAVAA+S +L E +E  
Sbjct: 61  FKHRPPKALDEDETEFLDKLEMSKREYERQLANEEDEQLRNFQAAVAARSAILHEPKEAA 120

Query: 121 ITPPAPAAQEKAPVRKETPVTRPPSMIIRVKPQAKKARIEPRSPEKAGSRAEILNAKAEE 180
           + PPAP  +E+ P+ K  P TRP   II+VKPQ KKA+   +  ++     +  +   + 
Sbjct: 121 LPPPAPVTKEQKPIGKRNPATRPFKAIIKVKPQPKKAKATEKEEKEIPGNGKPASHIDQA 180

Query: 181 SSESVRTHDTSSDRPLEAATTIGLVSYSDESEDED 214
           S +SV+ + T         T + LVSYSDESED+D
Sbjct: 181 SLDSVKGNVTGKTTE-GLQTGLALVSYSDESEDDD 214

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BLAST of CmoCh15G008900 vs. NCBI nr
Match: gi|449463511|ref|XP_004149477.1| (PREDICTED: protein FAM192A [Cucumis sativus])

HSP 1 Score: 337.0 bits (863), Expect = 2.3e-89
Identity = 189/213 (88.73%), Postives = 200/213 (93.90%), Query Frame = 1


Query: 1   MEDESARAIRLMSFVSEEQLDEAKKTRGERVEDGTAQRDRPLYEILKENKDKRDAEFNER 60
           MEDES+RAIRLM+FVSEEQLDEAKKTRGERVEDGTAQRDRPL+EILKENKDKRDAEFNER
Sbjct: 1   MEDESSRAIRLMNFVSEEQLDEAKKTRGERVEDGTAQRDRPLFEILKENKDKRDAEFNER 60

Query: 61  FKHRPPKALDEDETEFLDKYETSKREYERQMADADEQELRSFQAAVAAQSILLSEVREIT 120
           FKHRPPKALDEDETEFLDK ETSKREYERQMA+A+EQELRSFQAAVAAQSILLSEVREIT
Sbjct: 61  FKHRPPKALDEDETEFLDKLETSKREYERQMANAEEQELRSFQAAVAAQSILLSEVREIT 120

Query: 121 PPAPAAQEKAPVRKETPVTRPPSMIIRVKPQAKKARIEPRSPEKAGSRAEILNAKAEESS 180
           PPAPAAQEKA VR+ETPV+RPPSMIIRVKPQAKKARIEPRSP+ AGS  EI  AKAEE+S
Sbjct: 121 PPAPAAQEKASVRRETPVSRPPSMIIRVKPQAKKARIEPRSPKIAGSTTEIHVAKAEETS 180

Query: 181 ESVRTHDTSSDRPLEAATTIGLVSYSDESEDED 214
            SV+T DT+SDRPLEA    GLVSYSDESEDED
Sbjct: 181 NSVKTLDTNSDRPLEAGAITGLVSYSDESEDED 213

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BLAST of CmoCh15G008900 vs. NCBI nr
Match: gi|659072599|ref|XP_008466362.1| (PREDICTED: protein FAM192A [Cucumis melo])

HSP 1 Score: 337.0 bits (863), Expect = 2.3e-89
Identity = 189/213 (88.73%), Postives = 201/213 (94.37%), Query Frame = 1


Query: 1   MEDESARAIRLMSFVSEEQLDEAKKTRGERVEDGTAQRDRPLYEILKENKDKRDAEFNER 60
           MEDES+RAIRLM+FVSEEQLDEAKKTRGERVEDGTAQRDRPL+EILK+NKDKRDAEFNER
Sbjct: 1   MEDESSRAIRLMNFVSEEQLDEAKKTRGERVEDGTAQRDRPLFEILKDNKDKRDAEFNER 60

Query: 61  FKHRPPKALDEDETEFLDKYETSKREYERQMADADEQELRSFQAAVAAQSILLSEVREIT 120
           FKHRPPKALDEDETEFLDK ETSKREYERQMADA+EQELRSFQAAVAAQSILL+EVREIT
Sbjct: 61  FKHRPPKALDEDETEFLDKLETSKREYERQMADAEEQELRSFQAAVAAQSILLNEVREIT 120

Query: 121 PPAPAAQEKAPVRKETPVTRPPSMIIRVKPQAKKARIEPRSPEKAGSRAEILNAKAEESS 180
           PPAPAAQEKA VR+ETPV+RPPSMIIRVKPQAKKARIEPRSP+ AGS  EI  AKAEE S
Sbjct: 121 PPAPAAQEKASVRRETPVSRPPSMIIRVKPQAKKARIEPRSPKIAGSITEIPVAKAEEPS 180

Query: 181 ESVRTHDTSSDRPLEAATTIGLVSYSDESEDED 214
           +SV+T DT+SDRPLEAA   GLVSYSDESEDED
Sbjct: 181 KSVKTLDTNSDRPLEAAAITGLVSYSDESEDED 213

[Close]

BLAST of CmoCh15G008900 vs. NCBI nr
Match: gi|641868106|gb|KDO86790.1| (hypothetical protein CISIN_1g028180mg [Citrus sinensis])

HSP 1 Score: 240.7 bits (613), Expect = 2.3e-60
Identity = 137/213 (64.32%), Postives = 174/213 (81.69%), Query Frame = 1


Query: 1   MEDESARAIRLMSFVSEEQLDEAKKTRGERVEDGTAQRDRPLYEILKENKDKRDAEFNER 60
           M +ES+R IRLM+F+SEEQLDEAK+TRGERV+DGTAQRDRPL+EILKENKDK+DAEFNER
Sbjct: 1   MAEESSRPIRLMNFISEEQLDEAKRTRGERVDDGTAQRDRPLFEILKENKDKKDAEFNER 60

Query: 61  FKHRPPKALDEDETEFLDKYETSKREYERQMADADEQELRSFQAAVAAQSILLSEVREIT 120
           FKHRPPKALDEDETEFL+K+ETS+R+YERQ+AD + Q+LRSFQAAVAAQS ++ E++E T
Sbjct: 61  FKHRPPKALDEDETEFLEKWETSRRDYERQVADEEAQQLRSFQAAVAAQSTIVHELKE-T 120

Query: 121 PPAPAAQEKAPVRKETPVTRPPSMIIRVKPQAKKARIEPRSPEKAGSRAEILNAKAEESS 180
           PP PA QE+    ++ P TRP  MII+VKPQAKKARI+  S ++    A+  + + E+S 
Sbjct: 121 PPLPAVQEQKTAGRKNPPTRPLGMIIKVKPQAKKARIDEGSVKEPADIAKAPDVETEKSP 180

Query: 181 ESVRTHDTSSDRPLEAATTIGLVSYSDESEDED 214
           + VRT +  +D+  +   T GLVSYSDES+D+D
Sbjct: 181 DIVRTSNGDTDKSNDVTRT-GLVSYSDESDDDD 211

[Close]

BLAST of CmoCh15G008900 vs. NCBI nr
Match: gi|567904244|ref|XP_006444610.1| (hypothetical protein CICLE_v10022224mg [Citrus clementina])

HSP 1 Score: 238.0 bits (606), Expect = 1.5e-59
Identity = 135/213 (63.38%), Postives = 174/213 (81.69%), Query Frame = 1


Query: 1   MEDESARAIRLMSFVSEEQLDEAKKTRGERVEDGTAQRDRPLYEILKENKDKRDAEFNER 60
           M +ES+R IRLM+F+SEEQLDEAK+TRGERV+DGTAQRDRPL+EILKENKDK+DAEFNER
Sbjct: 1   MAEESSRPIRLMNFISEEQLDEAKRTRGERVDDGTAQRDRPLFEILKENKDKKDAEFNER 60

Query: 61  FKHRPPKALDEDETEFLDKYETSKREYERQMADADEQELRSFQAAVAAQSILLSEVREIT 120
           FKHRPPKALDEDETEFL+K+++S+R+YERQ+AD + Q+LRSFQAAVAAQS ++ E++E T
Sbjct: 61  FKHRPPKALDEDETEFLEKWDSSRRDYERQVADEEAQQLRSFQAAVAAQSTIVHELKE-T 120

Query: 121 PPAPAAQEKAPVRKETPVTRPPSMIIRVKPQAKKARIEPRSPEKAGSRAEILNAKAEESS 180
           PP PA QE+    ++ P TRP  MII+VKPQAKKARI+  S ++    A+  + + E+S 
Sbjct: 121 PPLPAVQEQKTAGRKNPPTRPLGMIIKVKPQAKKARIDEGSVKEPADIAKAPDVETEKSP 180

Query: 181 ESVRTHDTSSDRPLEAATTIGLVSYSDESEDED 214
           + VRT +  +D+  +   T GLVSYSDES+D+D
Sbjct: 181 DIVRTSNGDTDKSNDVTRT-GLVSYSDESDDDD 211

[Close]

BLAST of CmoCh15G008900 vs. NCBI nr
Match: gi|728841889|gb|KHG21332.1| (Uncharacterized protein F383_03615 [Gossypium arboreum])

HSP 1 Score: 231.9 bits (590), Expect = 1.1e-57
Identity = 135/213 (63.38%), Postives = 169/213 (79.34%), Query Frame = 1


Query: 1   MEDESARAIRLMSFVSEEQLDEAKKTRGERVEDGTAQRDRPLYEILKENKDKRDAEFNER 60
           ME+ES+ +I+LM+FVSE+QLDEAK+TRGER+EDGTAQRDRPLYEILKENKDK+DAEFNER
Sbjct: 1   MEEESSHSIKLMNFVSEQQLDEAKRTRGERIEDGTAQRDRPLYEILKENKDKKDAEFNER 60

Query: 61  FKHRPPKALDEDETEFLDKYETSKREYERQMADADEQELRSFQAAVAAQSILLSEVREIT 120
           FKHRPPKALDEDETEFLDK E S+REYERQ+AD + ++LRSFQAAVAAQS ++ E++E T
Sbjct: 61  FKHRPPKALDEDETEFLDKLEMSRREYERQVADEEAEQLRSFQAAVAAQSNIVLELKE-T 120

Query: 121 PPAPAAQEKAPVRKETPVTRPPSMIIRVKPQAKKARIEPRSPEKAGSRAEILNAKAEESS 180
           PP  A QE+  V K+ P TRP  M+I+VKPQAK+A+ EP     +G++A  +        
Sbjct: 121 PPVLANQEQKTVGKKNPATRPLGMLIKVKPQAKRAKTEPEEKLVSGTKAPDV-------- 180

Query: 181 ESVRTHDTSSDRPLEAATTIGLVSYSDESEDED 214
           ++V +  +  D+ L  A T GLVSYSDESED+D
Sbjct: 181 DNVESPKSDPDKSLNVAKT-GLVSYSDESEDDD 203

The following BLAST results are available for this feature:

BLAST of CmoCh15G008900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
F192A_MOUSE	9.4e-06	35.65	Protein FAM192A OS=Mus musculus GN=Fam192a PE=1 SV=1	[more]

BLAST of CmoCh15G008900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPX8_CUCSA	1.6e-89	88.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G125710 PE=4 SV=1	[more]
A0A067H781_CITSI	1.6e-60	64.32	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028180mg PE=4 SV=1	[more]
V4U1D6_9ROSI	1.0e-59	63.38	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022224mg PE=4 SV=1	[more]
A0A0B0P8Y1_GOSAR	7.4e-58	63.38	Uncharacterized protein OS=Gossypium arboreum GN=F383_03615 PE=4 SV=1	[more]
A0A0D2RTF5_GOSRA	6.2e-57	62.91	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G046700 PE=4 SV=1	[more]

BLAST of CmoCh15G008900 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G62140.1	6.8e-55	58.60	NEFA-interacting nuclear protein NIP30, N-terminal (InterPro:IPR0193...	[more]

BLAST of CmoCh15G008900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463511\|ref\|XP_004149477.1\|	2.3e-89	88.73	PREDICTED: protein FAM192A [Cucumis sativus]	[more]
gi\|659072599\|ref\|XP_008466362.1\|	2.3e-89	88.73	PREDICTED: protein FAM192A [Cucumis melo]	[more]
gi\|641868106\|gb\|KDO86790.1\|	2.3e-60	64.32	hypothetical protein CISIN_1g028180mg [Citrus sinensis]	[more]
gi\|567904244\|ref\|XP_006444610.1\|	1.5e-59	63.38	hypothetical protein CICLE_v10022224mg [Citrus clementina]	[more]
gi\|728841889\|gb\|KHG21332.1\|	1.1e-57	63.38	Uncharacterized protein F383_03615 [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019331	FAM192A/Fyv6_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G008900.1	CmoCh15G008900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019331	FAM192A/Fyv6, N-terminal	PFAM	PF10187	Nefa_Nip30_N	coord: 22..102 score: 2.2
None	No IPR available	unknown	Coil	Coil	coord: 77..100 scor
None	No IPR available	PANTHER	PTHR13495	NEFA-INTERACTING NUCLEAR PROTEIN NIP30	coord: 1..213 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G008900	Cucsa.374200	Cucumber (Gy14) v1	cgycmoB1031
CmoCh15G008900	CmaCh15G008580	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G008900	Cla005858	Watermelon (97103) v1	cmowmB268
CmoCh15G008900	Csa5G125710	Cucumber (Chinese Long) v2	cmocuB290
CmoCh15G008900	MELO3C005194	Melon (DHL92) v3.5.1	cmomeB240
CmoCh15G008900	ClCG01G007160	Watermelon (Charleston Gray)	cmowcgB248
CmoCh15G008900	CSPI05G02410	Wild cucumber (PI 183967)	cmocpiB299
CmoCh15G008900	Lsi09G007610	Bottle gourd (USVL1VR-Ls)	cmolsiB256
CmoCh15G008900	Cp4.1LG13g06100	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G008900	MELO3C005194.2	Melon (DHL92) v3.6.1	cmomedB272
CmoCh15G008900	CsaV3_5G018600	Cucumber (Chinese Long) v3	cmocucB0351
CmoCh15G008900	Cla97C01G007570	Watermelon (97103) v2	cmowmbB271
CmoCh15G008900	Bhi12G000905	Wax gourd	cmowgoB0370
CmoCh15G008900	CsGy5G012470	Cucumber (Gy14) v2	cgybcmoB587
CmoCh15G008900	Carg01349	Silver-seed gourd	carcmoB1118

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G008900	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh15G008900	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G008900	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G008900	Silver-seed gourd	carcmoB0647