CmoCh15G008800 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G008800
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr15 : 4450537 .. 4451167 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCGGTGTTGACCAAGAGTAGCTTGGGCAAGTGAGCTTGGACTGGCCAGCTCATCAACCTCTTCTCCAATTTGTCCAAACTTCCACAGTGTTTATAAATTCTACGACGCCCGCAAAGACTCGATCATAAACCATTTGAGATATTCAGAGATTTCCTTTCTCTGGTTCTCAATGGGATCAACACCACAGCATGTTTCCATCGACATGAATCAATTCTGTCCCATCCAGGGAGCCTCAGATGGCTTACCACCTACCACCGCCATGCCCAGGCCGCCTCCGCCACCCGACAGCTCTCAGACTCGCAACAATCTTGGAAAGATAGTTTTCGGGCTTACTTTCCAGGCAGTTTTGGCTCTGTTCATCAGCCCACCCACCTCATGTCCTCCACTTTTGATGCATATCTTTGCGGCGGCTATGTTGATCAGCTTTGCACTTTCACTTGCTGCGCTTTTCCTTCAAATTGCATACCCAAGAATTGCGCTTTCCTCCGGCAAGATCGGTGCTCTGCTAGCTGCCATTGGTGCGTGCACCATTACTAGTGTTCTTCTTAAGCATCAGCATTTCAGTTGGATTCCTTGGCTGGCATGCGGCTTCGCCTTGATGGCCTTCATTCTATCATTCAAGTGA

mRNA sequence

ATGTCGGCGGTGTTGACCAAGAGTAGCTTGGGCAATGTTTATAAATTCTACGACGCCCGCAAAGACTCGATCATAAACCATTTGAGATATTCAGAGATTTCCTTTCTCTGGTTCTCAATGGGATCAACACCACAGCATGTTTCCATCGACATGAATCAATTCTGTCCCATCCAGGGAGCCTCAGATGGCTTACCACCTACCACCGCCATGCCCAGGCCGCCTCCGCCACCCGACAGCTCTCAGACTCGCAACAATCTTGGAAAGATAGTTTTCGGGCTTACTTTCCAGGCAGTTTTGGCTCTGTTCATCAGCCCACCCACCTCATGTCCTCCACTTTTGATGCATATCTTTGCGGCGGCTATGTTGATCAGCTTTGCACTTTCACTTGCTGCGCTTTTCCTTCAAATTGCATACCCAAGAATTGCGCTTTCCTCCGGCAAGATCGGTGCTCTGCTAGCTGCCATTGGTGCGTGCACCATTACTAGTGTTCTTCTTAAGCATCAGCATTTCAGTTGGATTCCTTGGCTGGCATGCGGCTTCGCCTTGATGGCCTTCATTCTATCATTCAAGTGA

Coding sequence (CDS)

ATGTCGGCGGTGTTGACCAAGAGTAGCTTGGGCAATGTTTATAAATTCTACGACGCCCGCAAAGACTCGATCATAAACCATTTGAGATATTCAGAGATTTCCTTTCTCTGGTTCTCAATGGGATCAACACCACAGCATGTTTCCATCGACATGAATCAATTCTGTCCCATCCAGGGAGCCTCAGATGGCTTACCACCTACCACCGCCATGCCCAGGCCGCCTCCGCCACCCGACAGCTCTCAGACTCGCAACAATCTTGGAAAGATAGTTTTCGGGCTTACTTTCCAGGCAGTTTTGGCTCTGTTCATCAGCCCACCCACCTCATGTCCTCCACTTTTGATGCATATCTTTGCGGCGGCTATGTTGATCAGCTTTGCACTTTCACTTGCTGCGCTTTTCCTTCAAATTGCATACCCAAGAATTGCGCTTTCCTCCGGCAAGATCGGTGCTCTGCTAGCTGCCATTGGTGCGTGCACCATTACTAGTGTTCTTCTTAAGCATCAGCATTTCAGTTGGATTCCTTGGCTGGCATGCGGCTTCGCCTTGATGGCCTTCATTCTATCATTCAAGTGA

Homology

[Close]

BLAST of CmoCh15G008800 vs. TrEMBL
Match: A0A0A0KJN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-32
Identity = 84/157 (53.50%), Postives = 110/157 (70.06%), Query Frame = 1


Query: 40  MGSTPQHVSIDMNQ-FCPIQGASDGLPPTTAMP-----RPPPPPDSSQTRNNLGKIVFGL 99
           M S+ Q +SIDMN  +  I   ++  P    +P     +   P +SS+T NN+G  + GL
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60

Query: 100 TFQAVLALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLA 159
           TFQAVLALFI+  TS PPLL H+F AA+LISFA+S   +FLQ  +PRIAL   KIGAL+A
Sbjct: 61  TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120

Query: 160 AIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 191
           AIG C + S+L+ HQ+F+WI WLACGF+LMAF+LSF+
Sbjct: 121 AIGVCILASLLI-HQNFAWISWLACGFSLMAFLLSFR 156

[Close]

BLAST of CmoCh15G008800 vs. TrEMBL
Match: A0A0A0KJP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.9e-26
Identity = 83/167 (49.70%), Postives = 103/167 (61.68%), Query Frame = 1


Query: 40  MGSTPQHVSIDMNQFCP----IQGASDGL----PPTTAMP-------RPPPPPDSSQTRN 99
           M ST    S+DM+ F      I   + GL     P+  +P        P    DSSQ   
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQ--- 60

Query: 100 NLGKIVFGLTFQAVLALFIS-PPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIAL 159
            LGKI+  L+FQAVLALFIS PPTS PPLL+H FAAA+ ISFA+S AALFL  ++PR A 
Sbjct: 61  KLGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAH 120

Query: 160 SSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 191
              K+GAL +A G C I S LL HQ+F+WI W+AC F+++ F LSFK
Sbjct: 121 LFEKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

[Close]

BLAST of CmoCh15G008800 vs. TrEMBL
Match: A0A0A0KQ03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 72/170 (42.35%), Postives = 89/170 (52.35%), Query Frame = 1


Query: 40  MGSTPQH-VSIDMNQF----------------CPIQGA-SDGLPPTTAMPRPPPPPDSSQ 99
           M  TP H +S+DMN+                 C   GA SD LP    M RP P  +S Q
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPV-NSPQ 60

Query: 100 TRNNLGKIVFGLTFQAVLALFIS-PPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPR 159
                G     LTFQA++ LF+S  P+S  PL   +FAA ML SF  S   + LQ  +P+
Sbjct: 61  ----FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPK 120

Query: 160 IALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 191
            A      GAL AAIG C I S+LL + +F+WI WLA G  L AFI+SFK
Sbjct: 121 TAQLLQTFGALFAAIGTCIIGSLLL-YPNFTWICWLAAGLILPAFIISFK 164

[Close]

BLAST of CmoCh15G008800 vs. TrEMBL
Match: A0A061EGV0_THECC (Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao GN=TCM_011398 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.1e-07
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 1


Query: 71  PRPPPPPDSSQTRNNLGKIVFGLTFQAVLALFISPPTSCPP--LLMHIFAAAMLISFALS 130
           PRPP          +LGK +  L+FQ V+AL +S         L + I   +M+++FA S
Sbjct: 96  PRPPV---------SLGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVKISMIMAFAAS 155

Query: 131 LAALFLQIAYPRIALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILS 189
            + +FL+ +YP++A     IG+L+AA+G   +TS+ L    + W+ WLAC F+L+AF  S
Sbjct: 156 FSGIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNLY-WVTWLACAFSLLAFFSS 205

[Close]

BLAST of CmoCh15G008800 vs. NCBI nr
Match: gi|700194626|gb|KGN49803.1| (hypothetical protein Csa_5G136870 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 2.3e-32
Identity = 84/157 (53.50%), Postives = 110/157 (70.06%), Query Frame = 1


Query: 40  MGSTPQHVSIDMNQ-FCPIQGASDGLPPTTAMP-----RPPPPPDSSQTRNNLGKIVFGL 99
           M S+ Q +SIDMN  +  I   ++  P    +P     +   P +SS+T NN+G  + GL
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60

Query: 100 TFQAVLALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLA 159
           TFQAVLALFI+  TS PPLL H+F AA+LISFA+S   +FLQ  +PRIAL   KIGAL+A
Sbjct: 61  TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120

Query: 160 AIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 191
           AIG C + S+L+ HQ+F+WI WLACGF+LMAF+LSF+
Sbjct: 121 AIGVCILASLLI-HQNFAWISWLACGFSLMAFLLSFR 156

[Close]

BLAST of CmoCh15G008800 vs. NCBI nr
Match: gi|700194631|gb|KGN49808.1| (hypothetical protein Csa_5G137410 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 5.6e-26
Identity = 83/167 (49.70%), Postives = 103/167 (61.68%), Query Frame = 1


Query: 40  MGSTPQHVSIDMNQFCP----IQGASDGL----PPTTAMP-------RPPPPPDSSQTRN 99
           M ST    S+DM+ F      I   + GL     P+  +P        P    DSSQ   
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQ--- 60

Query: 100 NLGKIVFGLTFQAVLALFIS-PPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIAL 159
            LGKI+  L+FQAVLALFIS PPTS PPLL+H FAAA+ ISFA+S AALFL  ++PR A 
Sbjct: 61  KLGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAH 120

Query: 160 SSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 191
              K+GAL +A G C I S LL HQ+F+WI W+AC F+++ F LSFK
Sbjct: 121 LFEKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

[Close]

BLAST of CmoCh15G008800 vs. NCBI nr
Match: gi|700194629|gb|KGN49806.1| (hypothetical protein Csa_5G136900 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.7e-14
Identity = 72/170 (42.35%), Postives = 89/170 (52.35%), Query Frame = 1


Query: 40  MGSTPQH-VSIDMNQF----------------CPIQGA-SDGLPPTTAMPRPPPPPDSSQ 99
           M  TP H +S+DMN+                 C   GA SD LP    M RP P  +S Q
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPV-NSPQ 60

Query: 100 TRNNLGKIVFGLTFQAVLALFIS-PPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPR 159
                G     LTFQA++ LF+S  P+S  PL   +FAA ML SF  S   + LQ  +P+
Sbjct: 61  ----FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPK 120

Query: 160 IALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 191
            A      GAL AAIG C I S+LL + +F+WI WLA G  L AFI+SFK
Sbjct: 121 TAQLLQTFGALFAAIGTCIIGSLLL-YPNFTWICWLAAGLILPAFIISFK 164

[Close]

BLAST of CmoCh15G008800 vs. NCBI nr
Match: gi|645277436|ref|XP_008243769.1| (PREDICTED: uncharacterized protein LOC103341994 [Prunus mume])

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 52/113 (46.02%), Postives = 71/113 (62.83%), Query Frame = 1


Query: 85  NLGKIVFGLTFQAVLALFI-SPP------TSCPPLL-MHIFAAAMLISFALSLAALFLQI 144
           +LGK V GLTFQA++ L + S P         P LL +H+   AM+I+FA   +A+FL  
Sbjct: 98  SLGKTVLGLTFQAIVGLTLASNPGQPDQDQDQPHLLPLHMVGVAMVIAFAACFSAIFLTR 157

Query: 145 AYPRIALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSF 190
           AYPR A    KIG++ AA+G   +TS+ L +  F WI WLAC F+L+AF L+F
Sbjct: 158 AYPRAASLIEKIGSVSAALGFFLMTSIFLSN-IFIWICWLACAFSLLAFTLAF 209

[Close]

BLAST of CmoCh15G008800 vs. NCBI nr
Match: gi|590698393|ref|XP_007045702.1| (Ileal sodium/bile acid cotransporter, putative [Theobroma cacao])

HSP 1 Score: 63.5 bits (153), Expect = 4.4e-07
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 1


Query: 71  PRPPPPPDSSQTRNNLGKIVFGLTFQAVLALFISPPTSCPP--LLMHIFAAAMLISFALS 130
           PRPP          +LGK +  L+FQ V+AL +S         L + I   +M+++FA S
Sbjct: 96  PRPPV---------SLGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVKISMIMAFAAS 155

Query: 131 LAALFLQIAYPRIALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILS 189
            + +FL+ +YP++A     IG+L+AA+G   +TS+ L    + W+ WLAC F+L+AF  S
Sbjct: 156 FSGIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNLY-WVTWLACAFSLLAFFSS 205

The following BLAST results are available for this feature:

BLAST of CmoCh15G008800 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G008800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJN8_CUCSA	1.6e-32	53.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136870 PE=4 SV=1	[more]
A0A0A0KJP2_CUCSA	3.9e-26	49.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137410 PE=4 SV=1	[more]
A0A0A0KQ03_CUCSA	1.2e-14	42.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136900 PE=4 SV=1	[more]
A0A061EGV0_THECC	3.1e-07	36.67	Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao GN=TCM_011398 ...	[more]

BLAST of CmoCh15G008800 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh15G008800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194626\|gb\|KGN49803.1\|	2.3e-32	53.50	hypothetical protein Csa_5G136870 [Cucumis sativus]	[more]
gi\|700194631\|gb\|KGN49808.1\|	5.6e-26	49.70	hypothetical protein Csa_5G137410 [Cucumis sativus]	[more]
gi\|700194629\|gb\|KGN49806.1\|	1.7e-14	42.35	hypothetical protein Csa_5G136900 [Cucumis sativus]	[more]
gi\|645277436\|ref\|XP_008243769.1\|	2.5e-10	46.02	PREDICTED: uncharacterized protein LOC103341994 [Prunus mume]	[more]
gi\|590698393\|ref\|XP_007045702.1\|	4.4e-07	36.67	Ileal sodium/bile acid cotransporter, putative [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G008800.1	CmoCh15G008800.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G008800	MELO3C005177.2	Melon (DHL92) v3.6.1	cmomedB272

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G008800	Cucumber (Gy14) v2	cgybcmoB587
CmoCh15G008800	Silver-seed gourd	carcmoB0647
CmoCh15G008800	Silver-seed gourd	carcmoB1118
CmoCh15G008800	Cucumber (Chinese Long) v3	cmocucB0351
CmoCh15G008800	Watermelon (97103) v2	cmowmbB271
CmoCh15G008800	Wax gourd	cmowgoB0370
CmoCh15G008800	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh15G008800	Cucumber (Gy14) v1	cgycmoB1031
CmoCh15G008800	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G008800	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G008800	Wild cucumber (PI 183967)	cmocpiB299
CmoCh15G008800	Cucumber (Chinese Long) v2	cmocuB290
CmoCh15G008800	Melon (DHL92) v3.5.1	cmomeB240
CmoCh15G008800	Watermelon (Charleston Gray)	cmowcgB248
CmoCh15G008800	Watermelon (97103) v1	cmowmB268
CmoCh15G008800	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G008800	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G008800	Bottle gourd (USVL1VR-Ls)	cmolsiB256