CmoCh15G008800 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G008800
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr15 : 4450537 .. 4451167 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGCGGTGTTGACCAAGAGTAGCTTGGGCAAGTGAGCTTGGACTGGCCAGCTCATCAACCTCTTCTCCAATTTGTCCAAACTTCCACAGTGTTTATAAATTCTACGACGCCCGCAAAGACTCGATCATAAACCATTTGAGATATTCAGAGATTTCCTTTCTCTGGTTCTCAATGGGATCAACACCACAGCATGTTTCCATCGACATGAATCAATTCTGTCCCATCCAGGGAGCCTCAGATGGCTTACCACCTACCACCGCCATGCCCAGGCCGCCTCCGCCACCCGACAGCTCTCAGACTCGCAACAATCTTGGAAAGATAGTTTTCGGGCTTACTTTCCAGGCAGTTTTGGCTCTGTTCATCAGCCCACCCACCTCATGTCCTCCACTTTTGATGCATATCTTTGCGGCGGCTATGTTGATCAGCTTTGCACTTTCACTTGCTGCGCTTTTCCTTCAAATTGCATACCCAAGAATTGCGCTTTCCTCCGGCAAGATCGGTGCTCTGCTAGCTGCCATTGGTGCGTGCACCATTACTAGTGTTCTTCTTAAGCATCAGCATTTCAGTTGGATTCCTTGGCTGGCATGCGGCTTCGCCTTGATGGCCTTCATTCTATCATTCAAGTGA

mRNA sequence

ATGTCGGCGGTGTTGACCAAGAGTAGCTTGGGCAATGTTTATAAATTCTACGACGCCCGCAAAGACTCGATCATAAACCATTTGAGATATTCAGAGATTTCCTTTCTCTGGTTCTCAATGGGATCAACACCACAGCATGTTTCCATCGACATGAATCAATTCTGTCCCATCCAGGGAGCCTCAGATGGCTTACCACCTACCACCGCCATGCCCAGGCCGCCTCCGCCACCCGACAGCTCTCAGACTCGCAACAATCTTGGAAAGATAGTTTTCGGGCTTACTTTCCAGGCAGTTTTGGCTCTGTTCATCAGCCCACCCACCTCATGTCCTCCACTTTTGATGCATATCTTTGCGGCGGCTATGTTGATCAGCTTTGCACTTTCACTTGCTGCGCTTTTCCTTCAAATTGCATACCCAAGAATTGCGCTTTCCTCCGGCAAGATCGGTGCTCTGCTAGCTGCCATTGGTGCGTGCACCATTACTAGTGTTCTTCTTAAGCATCAGCATTTCAGTTGGATTCCTTGGCTGGCATGCGGCTTCGCCTTGATGGCCTTCATTCTATCATTCAAGTGA

Coding sequence (CDS)

ATGTCGGCGGTGTTGACCAAGAGTAGCTTGGGCAATGTTTATAAATTCTACGACGCCCGCAAAGACTCGATCATAAACCATTTGAGATATTCAGAGATTTCCTTTCTCTGGTTCTCAATGGGATCAACACCACAGCATGTTTCCATCGACATGAATCAATTCTGTCCCATCCAGGGAGCCTCAGATGGCTTACCACCTACCACCGCCATGCCCAGGCCGCCTCCGCCACCCGACAGCTCTCAGACTCGCAACAATCTTGGAAAGATAGTTTTCGGGCTTACTTTCCAGGCAGTTTTGGCTCTGTTCATCAGCCCACCCACCTCATGTCCTCCACTTTTGATGCATATCTTTGCGGCGGCTATGTTGATCAGCTTTGCACTTTCACTTGCTGCGCTTTTCCTTCAAATTGCATACCCAAGAATTGCGCTTTCCTCCGGCAAGATCGGTGCTCTGCTAGCTGCCATTGGTGCGTGCACCATTACTAGTGTTCTTCTTAAGCATCAGCATTTCAGTTGGATTCCTTGGCTGGCATGCGGCTTCGCCTTGATGGCCTTCATTCTATCATTCAAGTGA
Homology
[Close]
BLAST of CmoCh15G008800 vs. TrEMBL
Match: A0A0A0KJN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-32
Identity = 84/157 (53.50%), Postives = 110/157 (70.06%), Query Frame = 1 

Query: 40  MGSTPQHVSIDMNQ-FCPIQGASDGLPPTTAMP-----RPPPPPDSSQTRNNLGKIVFGL 99
           M S+ Q +SIDMN  +  I   ++  P    +P     +   P +SS+T NN+G  + GL
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60

Query: 100 TFQAVLALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLA 159
           TFQAVLALFI+  TS PPLL H+F AA+LISFA+S   +FLQ  +PRIAL   KIGAL+A
Sbjct: 61  TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120

Query: 160 AIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 191
           AIG C + S+L+ HQ+F+WI WLACGF+LMAF+LSF+
Sbjct: 121 AIGVCILASLLI-HQNFAWISWLACGFSLMAFLLSFR 156

[Close]
BLAST of CmoCh15G008800 vs. TrEMBL
Match: A0A0A0KJP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.9e-26
Identity = 83/167 (49.70%), Postives = 103/167 (61.68%), Query Frame = 1 

Query: 40  MGSTPQHVSIDMNQFCP----IQGASDGL----PPTTAMP-------RPPPPPDSSQTRN 99
           M ST    S+DM+ F      I   + GL     P+  +P        P    DSSQ   
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQ--- 60

Query: 100 NLGKIVFGLTFQAVLALFIS-PPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIAL 159
            LGKI+  L+FQAVLALFIS PPTS PPLL+H FAAA+ ISFA+S AALFL  ++PR A 
Sbjct: 61  KLGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAH 120

Query: 160 SSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 191
              K+GAL +A G C I S LL HQ+F+WI W+AC F+++ F LSFK
Sbjct: 121 LFEKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

[Close]
BLAST of CmoCh15G008800 vs. TrEMBL
Match: A0A0A0KQ03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 72/170 (42.35%), Postives = 89/170 (52.35%), Query Frame = 1 

Query: 40  MGSTPQH-VSIDMNQF----------------CPIQGA-SDGLPPTTAMPRPPPPPDSSQ 99
           M  TP H +S+DMN+                 C   GA SD LP    M RP P  +S Q
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPV-NSPQ 60

Query: 100 TRNNLGKIVFGLTFQAVLALFIS-PPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPR 159
                G     LTFQA++ LF+S  P+S  PL   +FAA ML SF  S   + LQ  +P+
Sbjct: 61  ----FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPK 120

Query: 160 IALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 191
            A      GAL AAIG C I S+LL + +F+WI WLA G  L AFI+SFK
Sbjct: 121 TAQLLQTFGALFAAIGTCIIGSLLL-YPNFTWICWLAAGLILPAFIISFK 164

[Close]
BLAST of CmoCh15G008800 vs. TrEMBL
Match: A0A061EGV0_THECC (Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao GN=TCM_011398 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.1e-07
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 1 

Query: 71  PRPPPPPDSSQTRNNLGKIVFGLTFQAVLALFISPPTSCPP--LLMHIFAAAMLISFALS 130
           PRPP          +LGK +  L+FQ V+AL +S         L + I   +M+++FA S
Sbjct: 96  PRPPV---------SLGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVKISMIMAFAAS 155

Query: 131 LAALFLQIAYPRIALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILS 189
            + +FL+ +YP++A     IG+L+AA+G   +TS+ L    + W+ WLAC F+L+AF  S
Sbjct: 156 FSGIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNLY-WVTWLACAFSLLAFFSS 205

[Close]
BLAST of CmoCh15G008800 vs. NCBI nr
Match: gi|700194626|gb|KGN49803.1| (hypothetical protein Csa_5G136870 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 2.3e-32
Identity = 84/157 (53.50%), Postives = 110/157 (70.06%), Query Frame = 1 

Query: 40  MGSTPQHVSIDMNQ-FCPIQGASDGLPPTTAMP-----RPPPPPDSSQTRNNLGKIVFGL 99
           M S+ Q +SIDMN  +  I   ++  P    +P     +   P +SS+T NN+G  + GL
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60

Query: 100 TFQAVLALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLA 159
           TFQAVLALFI+  TS PPLL H+F AA+LISFA+S   +FLQ  +PRIAL   KIGAL+A
Sbjct: 61  TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120

Query: 160 AIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 191
           AIG C + S+L+ HQ+F+WI WLACGF+LMAF+LSF+
Sbjct: 121 AIGVCILASLLI-HQNFAWISWLACGFSLMAFLLSFR 156

[Close]
BLAST of CmoCh15G008800 vs. NCBI nr
Match: gi|700194631|gb|KGN49808.1| (hypothetical protein Csa_5G137410 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 5.6e-26
Identity = 83/167 (49.70%), Postives = 103/167 (61.68%), Query Frame = 1 

Query: 40  MGSTPQHVSIDMNQFCP----IQGASDGL----PPTTAMP-------RPPPPPDSSQTRN 99
           M ST    S+DM+ F      I   + GL     P+  +P        P    DSSQ   
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQ--- 60

Query: 100 NLGKIVFGLTFQAVLALFIS-PPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIAL 159
            LGKI+  L+FQAVLALFIS PPTS PPLL+H FAAA+ ISFA+S AALFL  ++PR A 
Sbjct: 61  KLGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAH 120

Query: 160 SSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 191
              K+GAL +A G C I S LL HQ+F+WI W+AC F+++ F LSFK
Sbjct: 121 LFEKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

[Close]
BLAST of CmoCh15G008800 vs. NCBI nr
Match: gi|700194629|gb|KGN49806.1| (hypothetical protein Csa_5G136900 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.7e-14
Identity = 72/170 (42.35%), Postives = 89/170 (52.35%), Query Frame = 1 

Query: 40  MGSTPQH-VSIDMNQF----------------CPIQGA-SDGLPPTTAMPRPPPPPDSSQ 99
           M  TP H +S+DMN+                 C   GA SD LP    M RP P  +S Q
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPV-NSPQ 60

Query: 100 TRNNLGKIVFGLTFQAVLALFIS-PPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPR 159
                G     LTFQA++ LF+S  P+S  PL   +FAA ML SF  S   + LQ  +P+
Sbjct: 61  ----FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPK 120

Query: 160 IALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 191
            A      GAL AAIG C I S+LL + +F+WI WLA G  L AFI+SFK
Sbjct: 121 TAQLLQTFGALFAAIGTCIIGSLLL-YPNFTWICWLAAGLILPAFIISFK 164

[Close]
BLAST of CmoCh15G008800 vs. NCBI nr
Match: gi|645277436|ref|XP_008243769.1| (PREDICTED: uncharacterized protein LOC103341994 [Prunus mume])

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 52/113 (46.02%), Postives = 71/113 (62.83%), Query Frame = 1 

Query: 85  NLGKIVFGLTFQAVLALFI-SPP------TSCPPLL-MHIFAAAMLISFALSLAALFLQI 144
           +LGK V GLTFQA++ L + S P         P LL +H+   AM+I+FA   +A+FL  
Sbjct: 98  SLGKTVLGLTFQAIVGLTLASNPGQPDQDQDQPHLLPLHMVGVAMVIAFAACFSAIFLTR 157

Query: 145 AYPRIALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSF 190
           AYPR A    KIG++ AA+G   +TS+ L +  F WI WLAC F+L+AF L+F
Sbjct: 158 AYPRAASLIEKIGSVSAALGFFLMTSIFLSN-IFIWICWLACAFSLLAFTLAF 209

[Close]
BLAST of CmoCh15G008800 vs. NCBI nr
Match: gi|590698393|ref|XP_007045702.1| (Ileal sodium/bile acid cotransporter, putative [Theobroma cacao])

HSP 1 Score: 63.5 bits (153), Expect = 4.4e-07
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 1 

Query: 71  PRPPPPPDSSQTRNNLGKIVFGLTFQAVLALFISPPTSCPP--LLMHIFAAAMLISFALS 130
           PRPP          +LGK +  L+FQ V+AL +S         L + I   +M+++FA S
Sbjct: 96  PRPPV---------SLGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVKISMIMAFAAS 155

Query: 131 LAALFLQIAYPRIALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILS 189
            + +FL+ +YP++A     IG+L+AA+G   +TS+ L    + W+ WLAC F+L+AF  S
Sbjct: 156 FSGIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNLY-WVTWLACAFSLLAFFSS 205

The following BLAST results are available for this feature:
BLAST of CmoCh15G008800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh15G008800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJN8_CUCSA1.6e-3253.50Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136870 PE=4 SV=1[more]
A0A0A0KJP2_CUCSA3.9e-2649.70Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137410 PE=4 SV=1[more]
A0A0A0KQ03_CUCSA1.2e-1442.35Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136900 PE=4 SV=1[more]
A0A061EGV0_THECC3.1e-0736.67Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao GN=TCM_011398 ... [more]
BLAST of CmoCh15G008800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh15G008800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194626|gb|KGN49803.1|2.3e-3253.50hypothetical protein Csa_5G136870 [Cucumis sativus][more]
gi|700194631|gb|KGN49808.1|5.6e-2649.70hypothetical protein Csa_5G137410 [Cucumis sativus][more]
gi|700194629|gb|KGN49806.1|1.7e-1442.35hypothetical protein Csa_5G136900 [Cucumis sativus][more]
gi|645277436|ref|XP_008243769.1|2.5e-1046.02PREDICTED: uncharacterized protein LOC103341994 [Prunus mume][more]
gi|590698393|ref|XP_007045702.1|4.4e-0736.67Ileal sodium/bile acid cotransporter, putative [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G008800.1CmoCh15G008800.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh15G008800MELO3C005177.2Melon (DHL92) v3.6.1cmomedB272
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh15G008800Watermelon (97103) v2cmowmbB271
CmoCh15G008800Wax gourdcmowgoB0370
CmoCh15G008800Cucurbita moschata (Rifu)cmocmoB262
CmoCh15G008800Cucumber (Gy14) v1cgycmoB1031
CmoCh15G008800Cucurbita maxima (Rimu)cmacmoB287
CmoCh15G008800Cucurbita maxima (Rimu)cmacmoB693
CmoCh15G008800Wild cucumber (PI 183967)cmocpiB299
CmoCh15G008800Cucumber (Chinese Long) v2cmocuB290
CmoCh15G008800Melon (DHL92) v3.5.1cmomeB240
CmoCh15G008800Watermelon (Charleston Gray)cmowcgB248
CmoCh15G008800Watermelon (97103) v1cmowmB268
CmoCh15G008800Cucurbita pepo (Zucchini)cmocpeB280
CmoCh15G008800Cucurbita pepo (Zucchini)cmocpeB268
CmoCh15G008800Bottle gourd (USVL1VR-Ls)cmolsiB256
CmoCh15G008800Cucumber (Gy14) v2cgybcmoB587
CmoCh15G008800Silver-seed gourdcarcmoB0647
CmoCh15G008800Silver-seed gourdcarcmoB1118
CmoCh15G008800Cucumber (Chinese Long) v3cmocucB0351