CmoCh15G008100 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G008100
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNA-directed RNA polymerase II subunit RPB7
Location	Cmo_Chr15 : 4014936 .. 4020107 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTGCCACCTAAACATTGCTTTTCAAAGACCCAGATTCTTATCTTGGAGATCGCTGAGTACTTGTGTCACAGAGAGCTTGAGAAGGTATCTTTCTTAGGCATGGAAATGGAACCAAGGCTGGTAAAATCTCCCAGTAGCACAGGAAGTTACTCGGAGAAAGTGTCCTAGGAAAGCTGACTATATGTTATGAATGTCTTAACTATTGAGTTACGTTTATATTGGTAATGTTCCAAAGAACATTTGGTTCTAGCATTGTCACTCGGTTGATAATCTTTTGTGATTTAGAGAAATAAGGGAATCTTTTATGTAAGTTTACTCATTTGGAGTCGGGATGGAATAGAATTTCGAATCACTTCCCAATATTTTGTTTTTTGGTTTTATACCAAGATGATGTGATTAGATATATTATCTTTTTTAATCAATAATTTTTAAAAATTTATATATATACACACAATTTATATATATTTTGTACCTACCAACATTAATATTGTAAAAAAACTACACGAAATTTTGAAAGAAGCTACATCTAACGTAATCGTCTTGTAAAATGGATTAGGAGGGTTCCTTCTCGTATAAAATTTCAAACTAATCTTTAAGGTGGCTTTGCTCTTCAATAGCCTCTCACTTTGTATATGAAAGCGTCTCGTACTATCTCTTTTCAAGTTAATGAGAGGTAGTTTTGAAAGAACCCGAACATAGTGTTGTCGTTATTATCATAAAACAATTGTGTGCATTTCTTATCACAAAATATAAAACTAAATGTTAAAGATTCCTTCATTTTTAATAGTTACTCCCAAATAGTCACAATTTCTGTTATTACAACTAAAAGAGGGATGAGACAACTTTAAAATAATAAAATAATTAAATAGCCAAAAAGTTAAGTATTATTCATCTATTTTTATTTGCATTGTTTAGATTTCAATTAAATTAAACAATTTTTTTAAAAAAATGGATATTGTTCCATATCACTTGATTTCATACATATAAGGTAAATATTTTAAAATAAGTCAACGTTGTAATAGAAAAATAAAATAAAATATTAATTATTTTTTAATAATATTTTCGTAAAATAAAAAGAACACTCTAGCTCCCCACCGACCCCACCCATTCATTACACTCTCACTCCCACTCACCTAGACTTCTTCTTCCTCTCCGTGCTTGACGCTGTTGTCGGCCCGCCGCCTCTCCCCGTTCAGTGCCACCGCCGCCTCTCTCCCACTTTGTCCCGCCGCCGCCGCCTCCCTACCAGTACGTCTTTCTTCACAGCAACTCAAATTAGCATTTGTGTAACGAAAGAAACAGGGAGTTGTTTGCTTAACAGAACAATCTCAGCTTATCAATGACTGTAGATTATAATCGGGTTTTAATGTTCATTGGTTCTGGTTCACTGTCTCATACCCATATCATCGATTCAGCATTTTCTTCTCTCTCTTTTTTCTTGCTCTATCACAAATGGAGTCCACAAAACCCTCTTCTGCAATTGTGGAAGAACATAGATTCTTGCTTCTTCCACTTGTTCTTGTTCTTGTTCTTCTTTATCGCACTCTTAATTTCTTTAAATGGGGTTTCCTTCAGGTACAGGGAGCCACTATGTTCTTCCACATAGTTTTGGAGAGGAACATGCAGCTGCATCCACGGCACTTTGGCCGTAATCTCCGTGAAAATCTGGTGTCCAAACTCATGAAAGATGTTGAGGGTACTTGCAGGTTTGTTAACTTCACCCCCACCGCTTGTATCCTGCTACAACATTGCTGTTGATCTTGTTTTCTTTTTGTTAAATTTACCTTTTCGATAAGACCCTGAATGAGATCTCATGAAACCTTCTTTATAAGGGTGTGGAAACCCCTCCCTAGCAAACGCATTTTGAAAACCTTAGGGGAAGTCCTAAGAGGACAATATCTGCTAGCAGTTGGGTCGGGTCGGGTCGTTTCACTTTGCTTCACAACTAAGTATCCTAAAAGCATTCATGATTTGAACTAGTTTAGCTGGGCAAGATGGTTGTGTAGTTTCTTGTAGGAAAACCTCCCTGGTAAGTCTTAATTTGTGAGATCCCACGTCGGTTGGAGGGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTTCCTAGCAGACGCGTTTTAAAAACCTTGGGGGGAAACCCGTAAGGGAAAGCTCAAATAAGACAATATCTGCTGGCGGTGGGCTTGGGTTGTTACAAATGATGTCAGAGCCAGACACCGGATGGTGTGCTAGTGAGGACATTGGGACCCTAAGGGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGAGGAATGGAGTATCCCTTACAAGGGTGTGGAGGTTACTTCTACCTAGCATACGCGTTTTAAAACCTTGAGGGAAAGCCTAGAAGGAAAGCCCAAAGAGGACAATATTTGCTAGCGGTGGAGTTGGATTGTTACAAATGGTATAAGAGCCCGACACTGGGCGGTATGCCAGCGAGGTTGCCGGGTCCTGAAGGGGGGTAGATTGTGAGATTTCACATCAATTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAACAGACGTGTTTTAAAAACCTTGAGGGGAAGCTCGGAAGAGAAACCTCAAAAAAGACAATATCTACTAGCGGTGGGTTTGGGCTGTTGCAAATGGTATCAGAGCCAGACACTAGACAATGTGCCAGCGAGGACGCTAGGCCCCTAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGAAAGGGGAACGAAACATCCCTTGTAAGGGGTGTAGAAACCTCTCCGTAGCAGATGCGTTTTAAAACCTCGAGGGAAAGCCTAGAAGGAAAAGCCCAAAGAGGACAATATCTGCTAGTTGTGGGCTTGGACTGTTACAACATGTCAGTTCATGAGCGGACAAAAGCCAATAAAAATGGTAAAACTATTTGTTGGATGATATTATTCTTTTAAAAGGTTTGATACTTCTTTCAACTAGTGAACAATTAGATGGATTATGTTATCGAAAAGTTTTGTACTTCGACAGTGGTCGACATGGTTTCGTAGTAGCAATTACGGGAATTGAGAACATCGGTAAAGGATTGATTAGCGATGGGACAGGTTTCGTCACTTTTCCCGTTAAATACCAATGCGTCGTGTTTCGACCATTCAAGGGAGAAATCTTAGAAGCAATTGTTACTATGGTAAACAAGGTATCTATCTGGCACCATGGCACCCTTTTTTGATATCTAGCATGTGATTAATGAAGTTCTTTTGAATAGTAAATATGAATATGACTGCCATTGCAACTATTGTAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATGTAAGTATATGTTTATAATCCATTTTCATATATATGCGAGCGGTGGGTTTTGGCGGTTACAAATGGTATCAGAGCCAGACACTGGATGATGTTGTGCCAACGAGGAGGCTGAGCCCCGAAGGGGGGTGGACAAGAGGCGGTGTGCCAACAAGGACGTTGGGCCTTGAAGAGGGTAGATTGGGGGGTCCCACATCCATTAGAGAAGGGAACAAGTGTCCGCGAGGATGCTGGGCCCCGAAGGGGGTGGATTGTGAGATCTTACATTGGTTGGAGAGGAGAACGAAACATTCTTTATAAGGGTGTAGAAACCTCTTCCTAGTAGAGGCGTTTAGAAACCTTGAGGGGTAGCTCGAAAGGGGAAACCCAAAGAGGACAATATATGCTAGCGGTGGGCTTTGGCGGTTACAAATGGTATCAAAGCCAGACATCGGAAGATGTTGTGCTAGCGAGGAGGTTGAAACTCGAAAGGGGGTGGACATGAGGCGGTGTGCCAAAAAGGACGCTGGGCTCTGAAGATGGTAGATTGGGAGGTCCCACATCTATTAGAGAAGGGAACAAGTGCCAGCGAGGATGCTGGGCTCCGAAGGGGGTGGATTGTGAGATCCCACATCGATTGGGGAGAAAGGGGGTGGATTGTGAGATCTTACATCGATTGGGGAGGAGAACAAAACATTCTTTATAAGGGTGTAGAAATCTCTTTCTAGCAGACGCATTTTAGAAACCTTGAGGTAGCTCGAAAGGGAAAGCCCAAAGAGAACAATATATGCTGACGGTGGGCTTTGGCGGTTACAAATGGTATCAGAGCCAGACACCGGACGATGTGCCAGCGAGGAGGTTGAGCCTCGAAGCGGGGTGAACATGAGGTGGTGTGCCAACAAGGACACTGGACCCCGAAGGGGGTAGGTTAGGGGGTCCCACATCCATTAGAGATGGGAACAAGTGCCAGCGAGGACATTGGGCCTCGAAGGGGGTGGATTGTGAGATCCCACATCGATTGGGGAGGTAGAAGGTAGATTGTGAGATCTCATATTGGTTGGGAAGGAGAACGAAACATTCACTATTAGGGTGTAGAAACCTCTTCCTAGCAGACACGTTTTAAAAACCTTGACGGGAAGCCTGAAAGGGAAACCCCTTTTGTTACGATGTGAACAGTGCAAAGTGTATTTTTTGGAGAGAGATTCCGAAATTCATTAGGAATGTCGTCACTGACTTCAGTTCTCGTGTTCGTTGTGCAGTGAAGTATTTAAGCAAGCTAACACTAACACTAACACTAACGCTTTTTCTCATCACGTGTTTCAGTTGATACCAGATGATATGGAGTTCCAGTCCGGAGATATGCCAAACTATACCACTTCGGATGGATCAGTATATCTCTATTTGACATGCATTCTCTAACATAACGCTCTCTTGTCGTGTTTTTACTGATTTATTTCTGCTCTCGTGTAGGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATAATCGGGACTCGAGTCGATGCAACTGAAATCGTAACGTCTTTTCTCTATTTAACATCGTTAAAGATAACTCTATGTTTGTTGGTTCTTGTGAGTTTGGCGTCTCATTTAACTATTGCTTTTGCTTGCAGTTTTGTATTGGAACCATTAAAGATGACTTCTTGGGTGTCATAAATGACCCTGCGGCAGCTTAGAACATGTGTTAGTTTACTAATTTTACTGTATAGTTTCTGCATTTCCTTGACTGTTCTCTGTCGAATTAAACGGATTCGTTTGCCCGTTACTTGGTGTAGCAATATTTGGAATGAGAAACGTATTTATAACGGTCCAAGTCCAC

mRNA sequence

ATGTCTTTGCCACCTAAACATTGCTTTTCAAAGACCCAGATTCTTATCTTGGAGATCGCTGAGTACTTGTGTCACAGAGAGCTTGAGAAGGTATCTTTCTTAGGCATGGAAATGGAACCAAGGCTGACTTCTTCTTCCTCTCCGTGCTTGACGCTGTTGTCGGCCCGCCGCCTCTCCCCGTTCAGTGCCACCGCCGCCTCTCTCCCACTTTGTCCCGCCGCCGCCGCCTCCCTACCAGTACAGGGAGCCACTATGTTCTTCCACATAGTTTTGGAGAGGAACATGCAGCTGCATCCACGGCACTTTGGCCGTAATCTCCGTGAAAATCTGGTGTCCAAACTCATGAAAGATGTTGAGGGTACTTGCAGTGGTCGACATGGTTTCGTAGTAGCAATTACGGGAATTGAGAACATCGGTAAAGGATTGATTAGCGATGGGACAGGTTTCGTCACTTTTCCCGTTAAATACCAATGCGTCGTGTTTCGACCATTCAAGGGAGAAATCTTAGAAGCAATTGTTACTATGGTAAACAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCCGGAGATATGCCAAACTATACCACTTCGGATGGATCAGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATAATCGGGACTCGAGTCGATGCAACTGAAATCTTTTGTATTGGAACCATTAAAGATGACTTCTTGGGTGTCATAAATGACCCTGCGGCAGCTTAGAACATGTGTTAGTTTACTAATTTTACTGTATAGTTTCTGCATTTCCTTGACTGTTCTCTGTCGAATTAAACGGATTCGTTTGCCCGTTACTTGGTGTAGCAATATTTGGAATGAGAAACGTATTTATAACGGTCCAAGTCCAC

Coding sequence (CDS)

ATGTCTTTGCCACCTAAACATTGCTTTTCAAAGACCCAGATTCTTATCTTGGAGATCGCTGAGTACTTGTGTCACAGAGAGCTTGAGAAGGTATCTTTCTTAGGCATGGAAATGGAACCAAGGCTGACTTCTTCTTCCTCTCCGTGCTTGACGCTGTTGTCGGCCCGCCGCCTCTCCCCGTTCAGTGCCACCGCCGCCTCTCTCCCACTTTGTCCCGCCGCCGCCGCCTCCCTACCAGTACAGGGAGCCACTATGTTCTTCCACATAGTTTTGGAGAGGAACATGCAGCTGCATCCACGGCACTTTGGCCGTAATCTCCGTGAAAATCTGGTGTCCAAACTCATGAAAGATGTTGAGGGTACTTGCAGTGGTCGACATGGTTTCGTAGTAGCAATTACGGGAATTGAGAACATCGGTAAAGGATTGATTAGCGATGGGACAGGTTTCGTCACTTTTCCCGTTAAATACCAATGCGTCGTGTTTCGACCATTCAAGGGAGAAATCTTAGAAGCAATTGTTACTATGGTAAACAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCCGGAGATATGCCAAACTATACCACTTCGGATGGATCAGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATAATCGGGACTCGAGTCGATGCAACTGAAATCTTTTGTATTGGAACCATTAAAGATGACTTCTTGGGTGTCATAAATGACCCTGCGGCAGCTTAG

Homology

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BLAST of CmoCh15G008100 vs. Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 2.0e-95
Identity = 169/174 (97.13%), Postives = 173/174 (99.43%), Query Frame = 1


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIVLERNMQLHPR+FGRNLR+NLVSKLMKDVEGTCSGRHGFVVA+TGIENIGKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA 259
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA 174

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BLAST of CmoCh15G008100 vs. Swiss-Prot
Match: NRPB7_ARATH (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 6.1e-92
Identity = 163/176 (92.61%), Postives = 170/176 (96.59%), Query Frame = 1


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIVLERNMQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGFVVAITGI+ IGKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 261
           +GDMPNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDPAAA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

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BLAST of CmoCh15G008100 vs. Swiss-Prot
Match: RPB7_RAT (DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus GN=Polr2g PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 7.3e-53
Identity = 93/172 (54.07%), Postives = 129/172 (75.00%), Query Frame = 1


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I 
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
            G GFV +PVKY+ +VFRPFKGE+++A+VT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 205 -SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 256
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

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BLAST of CmoCh15G008100 vs. Swiss-Prot
Match: RPB7_BOVIN (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 7.3e-53
Identity = 93/172 (54.07%), Postives = 129/172 (75.00%), Query Frame = 1


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I 
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
            G GFV +PVKY+ +VFRPFKGE+++A+VT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 205 -SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 256
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

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BLAST of CmoCh15G008100 vs. Swiss-Prot
Match: RPB7_DANRE (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio GN=polr2g PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 7.3e-53
Identity = 94/172 (54.65%), Postives = 129/172 (75.00%), Query Frame = 1


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I 
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
            G GFV +PVKY+ +VFRPFKGE+++A+VT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 205 -SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 256
            + + P Y T D  V IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

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BLAST of CmoCh15G008100 vs. TrEMBL
Match: A0A0A0KPS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G312340 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 9.2e-95
Identity = 172/176 (97.73%), Postives = 175/176 (99.43%), Query Frame = 1


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 261
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

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BLAST of CmoCh15G008100 vs. TrEMBL
Match: A0A061GWQ3_THECC (DNA-directed RNA polymerase II isoform 1 OS=Theobroma cacao GN=TCM_041752 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 2.1e-94
Identity = 170/176 (96.59%), Postives = 173/176 (98.30%), Query Frame = 1


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN+GKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGE+LEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEVLEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 261
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP  A
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPTTA 176

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BLAST of CmoCh15G008100 vs. TrEMBL
Match: A0A0G2T566_9ROSI (DNA-directed RNA polymerase II non-catalytic subunit OS=Hypseocharis bilobata GN=nprb7 PE=2 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 7.8e-94
Identity = 170/176 (96.59%), Postives = 172/176 (97.73%), Query Frame = 1


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN+GKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 261
           SGDMPNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP  A
Sbjct: 121 SGDMPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPTGA 176

[Close]

BLAST of CmoCh15G008100 vs. TrEMBL
Match: A0A0G2T3N2_9ROSI (DNA-directed RNA polymerase II non-catalytic subunit OS=Erodium gruinum GN=nprb7 PE=2 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 7.8e-94
Identity = 170/176 (96.59%), Postives = 172/176 (97.73%), Query Frame = 1


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN+GKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 261
           SGDMPNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP  A
Sbjct: 121 SGDMPNYTTSDSSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPTGA 176

[Close]

BLAST of CmoCh15G008100 vs. TrEMBL
Match: A0A0G2T351_9ROSI (DNA-directed RNA polymerase II non-catalytic subunit OS=Erodium chrysanthum GN=nprb7 PE=2 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 7.8e-94
Identity = 170/176 (96.59%), Postives = 172/176 (97.73%), Query Frame = 1


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN+GKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 261
           SGDMPNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP  A
Sbjct: 121 SGDMPNYTTSDSSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPTGA 176

[Close]

BLAST of CmoCh15G008100 vs. TAIR10
Match: AT5G59180.1 (AT5G59180.1 DNA-directed RNA polymerase II)

HSP 1 Score: 338.6 bits (867), Expect = 3.5e-93
Identity = 163/176 (92.61%), Postives = 170/176 (96.59%), Query Frame = 1


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIVLERNMQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGFVVAITGI+ IGKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 261
           +GDMPNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDPAAA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]

BLAST of CmoCh15G008100 vs. TAIR10
Match: AT3G22900.1 (AT3G22900.1 RNA polymerase Rpb7-like, N-terminal domain)

HSP 1 Score: 75.5 bits (184), Expect = 5.5e-14
Identity = 43/128 (33.59%), Postives = 70/128 (54.69%), Query Frame = 1


Query: 127 GFVVAITGIENIGKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAG 186
           G+++  T +ENIG+G I + TG + FPV +  + F+ FKGEI+  +V  V+K G F ++G
Sbjct: 46  GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 105

Query: 187 PVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGT--RVDATEIFCIG 246
           P +I   +H+     EF  G+ P +     S +IQ  + VR  ++ T  R    +   + 
Sbjct: 106 PYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQIGARVRFVVLDTEWREAEKDFMALA 165

Query: 247 TIKDDFLG 253
           +I  D LG
Sbjct: 166 SIDGDNLG 172

[Close]

BLAST of CmoCh15G008100 vs. TAIR10
Match: AT4G14660.1 (AT4G14660.1 RNA polymerase Rpb7-like, N-terminal domain)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-13
Identity = 41/132 (31.06%), Postives = 74/132 (56.06%), Query Frame = 1


Query: 127 GFVVAITGIENIGKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAG 186
           G+ VA+T ++ IG+G I + TG V FPV +  + F+ FKGEI+  +V  V K G F   G
Sbjct: 47  GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCG 106

Query: 187 PVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR--VDATEIFCIG 246
           P++    ++    D ++  G+ P +     S +IQ ++ VR+ +IG +      E   + 
Sbjct: 107 PIENVYLSYTKMPDYKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIKWMEVEREFQALA 166

Query: 247 TIKDDFLGVIND 257
           +++ D+LG +++
Sbjct: 167 SLEGDYLGPLSE 177

[Close]

BLAST of CmoCh15G008100 vs. NCBI nr
Match: gi|449466050|ref|XP_004150740.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Cucumis sativus])

HSP 1 Score: 354.8 bits (909), Expect = 1.3e-94
Identity = 172/176 (97.73%), Postives = 175/176 (99.43%), Query Frame = 1


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 261
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]

BLAST of CmoCh15G008100 vs. NCBI nr
Match: gi|1009114763|ref|XP_015873863.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Ziziphus jujuba])

HSP 1 Score: 354.4 bits (908), Expect = 1.7e-94
Identity = 171/176 (97.16%), Postives = 174/176 (98.86%), Query Frame = 1


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIV+ERNMQLHPRHFGRNLREN+VSKLMKDVEGTCSGRHGFVVAITGIENIGKGLI 
Sbjct: 1   MFFHIVMERNMQLHPRHFGRNLRENIVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 261
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA A
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 176

[Close]

BLAST of CmoCh15G008100 vs. NCBI nr
Match: gi|590588833|ref|XP_007016297.1| (DNA-directed RNA polymerase II isoform 1 [Theobroma cacao])

HSP 1 Score: 353.6 bits (906), Expect = 2.9e-94
Identity = 170/176 (96.59%), Postives = 173/176 (98.30%), Query Frame = 1


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN+GKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGE+LEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEVLEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 261
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP  A
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPTTA 176

[Close]

BLAST of CmoCh15G008100 vs. NCBI nr
Match: gi|645241591|ref|XP_008227149.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Prunus mume])

HSP 1 Score: 353.2 bits (905), Expect = 3.8e-94
Identity = 171/176 (97.16%), Postives = 174/176 (98.86%), Query Frame = 1


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSG+HGFVVAITGIENIGKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVAKLMKDVEGTCSGQHGFVVAITGIENIGKGLIR 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 261
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA A
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 176

[Close]

BLAST of CmoCh15G008100 vs. NCBI nr
Match: gi|1021494952|ref|XP_016190482.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Arachis ipaensis])

HSP 1 Score: 352.1 bits (902), Expect = 8.6e-94
Identity = 172/188 (91.49%), Postives = 178/188 (94.68%), Query Frame = 1


Query: 73  AAAASLPVQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAI 132
           A  AS   +   MFFHIVLERNMQLHPR+FGRNLR+NLVSKLMKDVEGTCSGRHGFVVA+
Sbjct: 2   AKGASTSTRKRKMFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAV 61

Query: 133 TGIENIGKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFV 192
           TGIENIGKGLI DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQIFV
Sbjct: 62  TGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFV 121

Query: 193 SNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLG 252
           SNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKI+GTRVDATEIFCIGTIKDDFLG
Sbjct: 122 SNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIMGTRVDATEIFCIGTIKDDFLG 181

Query: 253 VINDPAAA 261
           VINDPA A
Sbjct: 182 VINDPATA 189

The following BLAST results are available for this feature:

BLAST of CmoCh15G008100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPB7_SOYBN	2.0e-95	97.13	DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1	[more]
NRPB7_ARATH	6.1e-92	92.61	DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana GN=NRPB7 PE=1 S...	[more]
RPB7_RAT	7.3e-53	54.07	DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus GN=Polr2g PE=2 ...	[more]
RPB7_BOVIN	7.3e-53	54.07	DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G PE=1 SV=1	[more]
RPB7_DANRE	7.3e-53	54.65	DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio GN=polr2g PE=2 SV=1	[more]

BLAST of CmoCh15G008100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPS4_CUCSA	9.2e-95	97.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G312340 PE=4 SV=1	[more]
A0A061GWQ3_THECC	2.1e-94	96.59	DNA-directed RNA polymerase II isoform 1 OS=Theobroma cacao GN=TCM_041752 PE=4 S...	[more]
A0A0G2T566_9ROSI	7.8e-94	96.59	DNA-directed RNA polymerase II non-catalytic subunit OS=Hypseocharis bilobata GN...	[more]
A0A0G2T3N2_9ROSI	7.8e-94	96.59	DNA-directed RNA polymerase II non-catalytic subunit OS=Erodium gruinum GN=nprb7...	[more]
A0A0G2T351_9ROSI	7.8e-94	96.59	DNA-directed RNA polymerase II non-catalytic subunit OS=Erodium chrysanthum GN=n...	[more]

BLAST of CmoCh15G008100 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59180.1	3.5e-93	92.61	DNA-directed RNA polymerase II	[more]
AT3G22900.1	5.5e-14	33.59	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT4G14660.1	1.2e-13	31.06	RNA polymerase Rpb7-like, N-terminal domain	[more]

BLAST of CmoCh15G008100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449466050\|ref\|XP_004150740.1\|	1.3e-94	97.73	PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Cucumis sativus]	[more]
gi\|1009114763\|ref\|XP_015873863.1\|	1.7e-94	97.16	PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Ziziphus jujuba]	[more]
gi\|590588833\|ref\|XP_007016297.1\|	2.9e-94	96.59	DNA-directed RNA polymerase II isoform 1 [Theobroma cacao]	[more]
gi\|645241591\|ref\|XP_008227149.1\|	3.8e-94	97.16	PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Prunus mume]	[more]
gi\|1021494952\|ref\|XP_016190482.1\|	8.6e-94	91.49	PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Arachis ipaen...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003029	S1_domain
IPR005576	RNA_pol_Rpb7_N
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003899	DNA-directed RNA polymerase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006366	transcription from RNA polymerase II promoter
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G008100.1	CmoCh15G008100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 162..240 score: 4.2
IPR005576	RNA polymerase Rpb7, N-terminal	GENE3D	G3DSA:3.30.1490.120		coord: 85..166 score: 2.6
IPR005576	RNA polymerase Rpb7, N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 93..161 score: 5.9
IPR005576	RNA polymerase Rpb7, N-terminal	unknown	SSF88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 85..162 score: 5.62
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 167..254 score: 3.1
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 163..253 score: 1.54
None	No IPR available	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 86..260 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G008100	CmaCh15G007810	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G008100	CmaCh04G022510	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G008100	Cla009087	Watermelon (97103) v1	cmowmB266
CmoCh15G008100	Csa5G312340	Cucumber (Chinese Long) v2	cmocuB292
CmoCh15G008100	ClCG01G008130	Watermelon (Charleston Gray)	cmowcgB246
CmoCh15G008100	CSPI05G13550	Wild cucumber (PI 183967)	cmocpiB290
CmoCh15G008100	Lsi09G008700	Bottle gourd (USVL1VR-Ls)	cmolsiB256
CmoCh15G008100	Cp4.1LG01g19610	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G008100	Cp4.1LG13g05630	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G008100	CsaV3_5G020160	Cucumber (Chinese Long) v3	cmocucB0353
CmoCh15G008100	Cla97C01G008470	Watermelon (97103) v2	cmowmbB269
CmoCh15G008100	Bhi12G001023	Wax gourd	cmowgoB0367
CmoCh15G008100	Carg18307	Silver-seed gourd	carcmoB0714
CmoCh15G008100	Carg01422	Silver-seed gourd	carcmoB1118

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G008100	CmoCh04G023540	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G008100	Cucumber (Gy14) v2	cgybcmoB577
CmoCh15G008100	Cucumber (Gy14) v2	cgybcmoB589
CmoCh15G008100	Melon (DHL92) v3.6.1	cmomedB272
CmoCh15G008100	Cucumber (Chinese Long) v3	cmocucB0340
CmoCh15G008100	Watermelon (97103) v2	cmowmbB271
CmoCh15G008100	Cucumber (Gy14) v1	cgycmoB0605
CmoCh15G008100	Wild cucumber (PI 183967)	cmocpiB301
CmoCh15G008100	Cucumber (Chinese Long) v2	cmocuB285
CmoCh15G008100	Melon (DHL92) v3.5.1	cmomeB240
CmoCh15G008100	Watermelon (Charleston Gray)	cmowcgB248
CmoCh15G008100	Watermelon (97103) v1	cmowmB269