CmoCh15G007680 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G007680
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 3
Location	Cmo_Chr15 : 3770496 .. 3772468 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAAGATTACTATGTCCTGGAGTGTCAGTTTTCTTTGCACTCATTGGGAGCCTTTGTCAATCTGGGAAATTGGAGGAAGCAGAGAAATATTTGAAGATCATGAAAGATAGTTCTACCAATATATCAAACATTAACCTTGTTCAACTTGAAGAAGGGTAATCGAGCAAAAGCTCTCGAACTGTATAATGAGATGATGTTCAATGGATGGAAGAGTTTCTGTTTTCCAAACATGTGCAGGTTTTGACATGGAACTGACCCGTTGATCTGCACTTCCTCGGACAGAGTAATTAACATATAAAGAAGCTACACGTTTGAAAGGTAATTTTTGTTGGCTTTTATATATTTATTCATTTATGTTTACTTTGCAAGAACTCAGAGCTATTCTAAATTCAATAGTTAAAAATCAATTATTGACTGTTTGTTTGGCCTAGCCTTTATATAATAAGAGAAGGGTCAATTCAAGTGGAGCTTTATCTTCAAGAAAACATTGGCTGTGCTTTCTGTTGGCTGTTTGTGCTAATTCTTGAGGCTACTTATCTGCATTTTTAGTCTGTATATGAACGGATCAAGAAGGCTTAGACAGTTGTTAGATTCAATGACATGTTGCTTCTCTCTTTTGTCAATAAGGAACTTTTTGGCTGGCCTCTCTGGTTAGTTTCGAGTTACTTTTCTTTAAGTTTTGAGCTCCACTTATAACAGCCCAAGCTCACCGCCAGCAGATATTGTCCACTTTAGCCCGTTATATATCGTTGTCAGCCTCACAGTTTTAAATCACGTCTGCTAGGAAGAGATTTCTACATCTTAATAAAGAATATTTTGTTCCCCTCTCCAACCGAGGTGAGATCTCACAATCCACCCCCTTGGGGACTAGTGTTCTCACTGACACACTGCCTAGTGCCTGGCTCTGATACCATTTATAATAGCTTAAGGTCACCGCTAGTAAATATTGTCTGCTTTGGCCCGTTATATGTCGTCGTCAGTCTCATGGTTTTAAAATGCGTCTGCTAGGGAGAGATTTGCATACCCTTATGAAGATGCTTCGTTCCCCTCTCCCACCGATGTGAAATCTTACAACACTTCTAATGGGCTCGTGGAGTCGCAAGGTAAATAGCACATTTGGGGTATAGCAAAACTTTTAGGATTGAAGTTGATGAGAAGATAGGGAGGAAGAAGAGCTCCACTTTGGAGGAAAGCAAGGTGATAGAAATGTTATTTGGATCAAATTAGGAACACTATTATAGTATTACTCAAAGCCAAGGTTTCAAGTACCTAGAATACTCTTCCTCCTTCATATTTCAGTGTATTGTGTAGTTCTATTCTGGTTGAATCTGGTTGAATGCAGGAAATTCCTTCTAATTTTCTCCCTCAACAGTCAAAACTTTTACTCAAACTTTGGTGGTGATAACTACGTGGGTTTGCTTGTTGTTGCCCCTGCATTACTAAATAATGTCATTGGGATGACCTGACAATGTGACTTTGTGGGCAGCACACTTTGTGAGCTGTTTCTAGAACTTATTTATGGCTAGTTTTGATGATTGATTGGCCATTTACATGCACATATTCGTTTCCTTGGTAGAAATCGAGCCATTGGAGCAAAACAAATGATTTGAAGGAATGATTCAATTGGCCAAAAAATGGGTGAACAGATATCCAATCAAGGAAGTCCGAAGACCGAAAGGAGCAGCGTGAATTGTTGCCCAAACCGAAGCCAAAAAGCAGTCAAGGCAGCAATGAGACGCCACTGAAGAGAGTTGCAATGGTGTTTGTAAAAGCCTAAACTCCTAGTAGGAGACATTGTCCTCTTTGTGCTTCCTTTATGAACTTCCTCAAGGTTTTGAAACGTGTATGCTATGGAGAGATTTCCATACACTTATATGGAGAATGTTTCGTCACTTCTCCAACCGATGTGGAATTTCACCATTCATCCCTTTGGGGATCCATCATCCTCGGTTCATGCCATCCCATAC

mRNA sequence

ATGGAAGCAAGATTACTATGTCCTGGAGTGTCAGTTTTCTTTGCACTCATTGGGAGCCTTTGTCAATCTGGGAAATTGGAGGAAGCAGAGAAATATTTGAAGATCATGAAAGATAGTTCTACCAATATATCAAACATTAACCTTGTTCAACTTGAAGAAGGCTACACGTTTGAAAGAAATCGAGCCATTGGAGCAAAACAAATGATTTGAAGGAATGATTCAATTGGCCAAAAAATGGGTGAACAGATATCCAATCAAGGAAGTCCGAAGACCGAAAGGAGCAGCGTGAATTGTTGCCCAAACCGAAGCCAAAAAGCAGTCAAGGCAGCAATGAGACGCCACTGAAGAGAGTTGCAATGGTGTTTGTAAAAGCCTAAACTCCTAGTAGGAGACATTGTCCTCTTTGTGCTTCCTTTATGAACTTCCTCAAGGTTTTGAAACGTGTATGCTATGGAGAGATTTCCATACACTTATATGGAGAATGTTTCGTCACTTCTCCAACCGATGTGGAATTTCACCATTCATCCCTTTGGGGATCCATCATCCTCGGTTCATGCCATCCCATAC

Coding sequence (CDS)

ATGGAAGCAAGATTACTATGTCCTGGAGTGTCAGTTTTCTTTGCACTCATTGGGAGCCTTTGTCAATCTGGGAAATTGGAGGAAGCAGAGAAATATTTGAAGATCATGAAAGATAGTTCTACCAATATATCAAACATTAACCTTGTTCAACTTGAAGAAGGCTACACGTTTGAAAGAAATCGAGCCATTGGAGCAAAACAAATGATTTGA

Homology

[Close]

BLAST of CmoCh15G007680 vs. TrEMBL
Match: A0A0A0KRP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G423870 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-10
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1


Query: 1   MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSS 41
           M ARLL PGVSVFFALIGSLCQSG+LEEAEKYLKI+KDSS
Sbjct: 465 MGARLLSPGVSVFFALIGSLCQSGRLEEAEKYLKIVKDSS 504

[Close]

BLAST of CmoCh15G007680 vs. TrEMBL
Match: A5AQQ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012747 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-06
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1


Query: 1   MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEGYTFERN 60
           ME R L PG+ VF ++I SLCQ  KLE+AEKYL+IMKD S  IS      L  GY FE+ 
Sbjct: 462 MEYRSLSPGLLVFESIIRSLCQCRKLEKAEKYLRIMKDRSIAISTCVYETLISGY-FEKG 521

Query: 61  RAIGAKQM 69
             + A Q+
Sbjct: 522 DELRASQL 528

[Close]

BLAST of CmoCh15G007680 vs. TrEMBL
Match: F6HIZ1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0047g01040 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-06
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 1


Query: 1   MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEGYTFERN 60
           ME R L PG+ VF +LI SLCQ  KLE+ EKYL+IMKD S  IS      L  GY FE+ 
Sbjct: 78  MEYRSLSPGLLVFESLIRSLCQCRKLEKTEKYLRIMKDRSIAISTCVYETLISGY-FEKG 137

Query: 61  RAIGAKQM 69
             + A Q+
Sbjct: 138 DELRASQL 144

[Close]

BLAST of CmoCh15G007680 vs. NCBI nr
Match: gi|659121166|ref|XP_008460527.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 7.0e-11
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 1


Query: 1   MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSS 41
           MEARLL PG+SVFFALIGSLCQSG+LEEAEKYLKI+KDSS
Sbjct: 466 MEARLLSPGISVFFALIGSLCQSGRLEEAEKYLKIVKDSS 505

[Close]

BLAST of CmoCh15G007680 vs. NCBI nr
Match: gi|778702614|ref|XP_004140361.2| (PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-10
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1


Query: 1   MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSS 41
           M ARLL PGVSVFFALIGSLCQSG+LEEAEKYLKI+KDSS
Sbjct: 465 MGARLLSPGVSVFFALIGSLCQSGRLEEAEKYLKIVKDSS 504

[Close]

BLAST of CmoCh15G007680 vs. NCBI nr
Match: gi|147856554|emb|CAN82481.1| (hypothetical protein VITISV_012747 [Vitis vinifera])

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-06
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1


Query: 1   MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEGYTFERN 60
           ME R L PG+ VF ++I SLCQ  KLE+AEKYL+IMKD S  IS      L  GY FE+ 
Sbjct: 462 MEYRSLSPGLLVFESIIRSLCQCRKLEKAEKYLRIMKDRSIAISTCVYETLISGY-FEKG 521

Query: 61  RAIGAKQM 69
             + A Q+
Sbjct: 522 DELRASQL 528

The following BLAST results are available for this feature:

BLAST of CmoCh15G007680 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G007680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRP7_CUCSA	2.4e-10	90.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G423870 PE=4 SV=1	[more]
A5AQQ7_VITVI	2.1e-06	51.47	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012747 PE=4 SV=1	[more]
F6HIZ1_VITVI	3.6e-06	51.47	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0047g01040 PE=4 SV=...	[more]

BLAST of CmoCh15G007680 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh15G007680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121166\|ref\|XP_008460527.1\|	7.0e-11	90.00	PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial ...	[more]
gi\|778702614\|ref\|XP_004140361.2\|	3.5e-10	90.00	PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial ...	[more]
gi\|147856554\|emb\|CAN82481.1\|	3.0e-06	51.47	hypothetical protein VITISV_012747 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G007680.1	CmoCh15G007680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 15..39 score: 2.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 15..39 score: 1.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 9..43 score: 8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G007680	Lsi09G009280	Bottle gourd (USVL1VR-Ls)	cmolsiB256
CmoCh15G007680	Cp4.1LG01g19790	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G007680	CsaV3_5G024140	Cucumber (Chinese Long) v3	cmocucB0337
CmoCh15G007680	Cla97C01G009070	Watermelon (97103) v2	cmowmbB271
CmoCh15G007680	Bhi12G001065	Wax gourd	cmowgoB0367
CmoCh15G007680	Carg01463	Silver-seed gourd	carcmoB1118
CmoCh15G007680	Carg18271	Silver-seed gourd	carcmoB0714

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G007680	CmoCh04G023960	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G007680	Cucumber (Gy14) v1	cgycmoB0115
CmoCh15G007680	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G007680	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G007680	Wild cucumber (PI 183967)	cmocpiB289
CmoCh15G007680	Cucumber (Chinese Long) v2	cmocuB280
CmoCh15G007680	Melon (DHL92) v3.5.1	cmomeB240
CmoCh15G007680	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G007680	Cucumber (Gy14) v2	cgybcmoB574
CmoCh15G007680	Melon (DHL92) v3.6.1	cmomedB273